Rorug03G0150800

Late embryogenesis abundant protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
12423409 .. 12425116
1708 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0150800.1

Sequence Viewer

Length: 1074 bp
ATGCCTCCTCCGGGTCGAGCAGCCGTCGCTGCAATCCTCGTATTCTGTCTCCTCCTCCTCAACAATGTTTCCGCCACCGAGCACACCTACATTGCCTCGCAGCAGGTGACAGCGCAGGACTTCCTCCAGGCCCACAACGAAGTCAGGGCCATGTTCAACGAGCCGATGCTAACGTGGGACGATAAGCTAGCTGACTACGCCCACCAGTGGGCTGAGAAGACCAGCGCCCTAGGGAAATGCGAGGAGCGGTACCACTCCAACGGCCCCTACGGCGAGAACCTCTTTTGGGGGTGGTCGTGGAACGACTACTTTAGCCCTAGAGACGCAGTCATGATGTGGACCGAGGAGAAAAACGACTTCGACGTCAAGTCGTTGACGTGCACGCCGGGGAAAATGTGCGGCCACTTCACGCAGGTCATGTGGAGGAACTCCAAGAGAGTAGGGTGCAGCCGCATCAAGTGCGCCCAAGGCGGAGTGTTGATGATTTGTAATTATGATCCTCCTGGGAATTGGATTGATTCGAAACTTGGAGGTCTCATGAATCCCTTCGGCGAGGATAAGACGACAGTGCCTCCTGTTTCGGCTGAAGAAGTGACGCAAGCAATACCGCATGTTGTTCAGCCGAAAGTGCCGCAACCAATGCCGGTTGATGGTCATCCGACAGTGCCGCACCCGGTGCCGGCTGATGGTCATCCGAAAGTGCCGCAACCAGTGCCGGCTGACGGTCATCCGAAAGTGCCGCAACCAGTGCCGGCTGACGGTCATCCGACAGTTCCGCACCACCCGGTGCCGGCTGACGGTCATCCGAAAGTGCCGCACCCGGTGCCGGCTGACGGTCATCCCACAGTGCCGCACCCGGTGCCGGCTGAACATCAGCCTGCATTCTCCCAACCGCCGCCGTCTGGCGGAGAGTTGCCAAAGAAAGGAAGAAGGGGTCAAGGGAGAGGAGGTCATCATCGTGGTCGTGCTAAACCTAACCAGAACCGTAATCATCGTAACCGTAACCACCTTAGCCCCCGCCAACTCTATCTTAATCGCATCCGTCGTCGTCAACGTGATAATCGTAAACTGTAG

Protein Analysis

357

Amino Acids

39.71

Weight (kDa)

9.13

Isoelectric Point (pI)

50.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CAP PF00188 42 - 165 1.3e-19 Cysteine-rich secretory protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 94
AasI GACNNNNNNGTC 1 cut(s) 362
AatII GACGTC 1 cut(s) 366
Acc36I ACCTGC 2 cut(s) 94, 403
Acc65I GGTACC 1 cut(s) 249
AccB1I GGYRCC 5 cut(s) 249, 676, 787, 823, 859
AccBSI CCGCTC 1 cut(s) 247
AclWI GGATC 1 cut(s) 491
AcoI YGGCCR 1 cut(s) 400
AcuI CTGAAG 1 cut(s) 606
AcyI GRCGYC 1 cut(s) 363
AdeI CACNNNGTG 4 cut(s) 676, 787, 823, 859
AfaI GTAC 1 cut(s) 251
AgsI TTSAA 1 cut(s) 157
AhdI GACNNNNNGTC 1 cut(s) 367
AjiI CACGTC 1 cut(s) 378
AjnI CCWGG 2 cut(s) 126, 502
AluBI AGCT 2 cut(s) 187, 191
AluI AGCT 2 cut(s) 187, 191
Alw21I GWGCWC 2 cut(s) 84, 383
Alw26I GTCTC 3 cut(s) 53, 315, 539
Alw44I GTGCAC 1 cut(s) 379
AlwI GGATC 1 cut(s) 491
AoxI GGCC 4 cut(s) 129, 147, 262, 400
ApaLI GTGCAC 1 cut(s) 379
ApeKI GCWGC 4 cut(s) 20, 29, 100, 447
Asp700I GAANNNNTTC 1 cut(s) 545
Asp718I GGTACC 1 cut(s) 249
AspA2I CCTAGG 1 cut(s) 229
AspLEI GCGC 3 cut(s) 115, 227, 464
AspS9I GGNCC 4 cut(s) 130, 147, 263, 339
AsuC2I CCSGG 6 cut(s) 12, 387, 674, 785, 821, 857
AsuHPI GGTGA 1 cut(s) 118
AsuII TTCGAA 1 cut(s) 521
AsuNHI GCTAGC 1 cut(s) 187
AvaII GGWCC 1 cut(s) 339
AvrII CCTAGG 1 cut(s) 229
BaeGI GKGCMC 1 cut(s) 383
BanI GGYRCC 5 cut(s) 249, 676, 787, 823, 859
BbsI GAAGAC 1 cut(s) 224
Bbv12I GWGCWC 2 cut(s) 84, 383
BbvI GCAGC 4 cut(s) 16, 32, 112, 459
BccI CCATC 2 cut(s) 644, 680
BceAI ACGGC 4 cut(s) 8, 277, 286, 883
BciT130I CCWGG 2 cut(s) 128, 504
BcnI CCSGG 6 cut(s) 12, 387, 674, 785, 821, 857
BcoDI GTCTC 3 cut(s) 53, 315, 539
BfaI CTAG 3 cut(s) 188, 230, 318
BfmI CTRYAG 1 cut(s) 1070
BfoI RGCGCY 1 cut(s) 228
BfuAI ACCTGC 2 cut(s) 94, 403
BglI GCCNNNNNGGC 1 cut(s) 270
BlnI CCTAGG 1 cut(s) 229
Bme1390I CCNGG 8 cut(s) 12, 128, 387, 504, 674, 785, 821, 857
Bme18I GGWCC 1 cut(s) 339
BmeRI GACNNNNNGTC 1 cut(s) 367
BmgBI CACGTC 1 cut(s) 378
BmgT120I GGNCC 4 cut(s) 130, 147, 263, 339
BmiI GGNNCC 6 cut(s) 251, 265, 678, 789, 825, 861
BmrFI CCNGG 8 cut(s) 12, 128, 387, 504, 674, 785, 821, 857
BmsI GCATC 3 cut(s) 156, 462, 1047
BmtI GCTAGC 1 cut(s) 191
BpiI GAAGAC 1 cut(s) 224
BpmI CTGGAG 1 cut(s) 110
Bpu10I CCTNAGC 1 cut(s) 1010
Bpu14I TTCGAA 1 cut(s) 521
BpuMI CCSGG 6 cut(s) 12, 387, 674, 785, 821, 857
BsaBI GATNNNNATC 2 cut(s) 654, 690
BsaHI GRCGYC 1 cut(s) 363
BsaI GGTCTC 1 cut(s) 539
BsaJI CCNNGG 5 cut(s) 229, 342, 386, 466, 503
BsaXI ACNNNNNCTCC 4 cut(s) 556, 586, 934, 964
Bse118I RCCGGY 7 cut(s) 643, 679, 715, 751, 790, 826, 862
Bse1I ACTGG 3 cut(s) 205, 710, 746
Bse3DI GCAATG 1 cut(s) 90
Bse8I GATNNNNATC 2 cut(s) 654, 690
BseBI CCWGG 2 cut(s) 128, 504
BseDI CCNNGG 5 cut(s) 229, 342, 386, 466, 503
BseGI GGATG 7 cut(s) 655, 691, 727, 763, 802, 838, 1038
BseJI GATNNNNATC 2 cut(s) 654, 690
BseMI GCAATG 1 cut(s) 90
BseMII CTCAG 1 cut(s) 204
BseNI ACTGG 3 cut(s) 205, 710, 746
BseRI GAGGAG 6 cut(s) 41, 44, 47, 257, 359, 960
BseSI GKGCMC 1 cut(s) 383
BseXI GCAGC 4 cut(s) 16, 32, 112, 459
BsgI GTGCAG 1 cut(s) 466
BshFI GGCC 4 cut(s) 131, 149, 264, 402
BshNI GGYRCC 5 cut(s) 249, 676, 787, 823, 859
BsiHKAI GWGCWC 2 cut(s) 84, 383
BslFI GGGAC 1 cut(s) 191
BsmAI GTCTC 3 cut(s) 53, 315, 539
BsmBI CGTCTC 1 cut(s) 315
BsmFI GGGAC 1 cut(s) 191
BsmI GAATGC 1 cut(s) 881
BsnI GGCC 4 cut(s) 131, 149, 264, 402
Bso31I GGTCTC 1 cut(s) 539
Bsp119I TTCGAA 1 cut(s) 521
Bsp1286I GDGCHC 2 cut(s) 84, 383
Bsp143I GATC 1 cut(s) 496
BspANI GGCC 4 cut(s) 131, 149, 264, 402
BspCNI CTCAG 1 cut(s) 205
BspHI TCATGA 2 cut(s) 330, 537
BspLI GGNNCC 6 cut(s) 251, 265, 678, 789, 825, 861
BspMI ACCTGC 2 cut(s) 94, 403
BspOI GCTAGC 1 cut(s) 191
BspPI GGATC 1 cut(s) 491
BspT104I TTCGAA 1 cut(s) 521
BspT107I GGYRCC 5 cut(s) 249, 676, 787, 823, 859
BspTNI GGTCTC 1 cut(s) 539
BsrBI CCGCTC 1 cut(s) 247
BsrDI GCAATG 1 cut(s) 90
BsrFI RCCGGY 7 cut(s) 643, 679, 715, 751, 790, 826, 862
BsrI ACTGG 3 cut(s) 205, 710, 746
BssAI RCCGGY 7 cut(s) 643, 679, 715, 751, 790, 826, 862
BssECI CCNNGG 5 cut(s) 229, 342, 386, 466, 503
BssMI GATC 1 cut(s) 496
BssNI GRCGYC 1 cut(s) 363
BssT1I CCWWGG 2 cut(s) 229, 466
Bst2UI CCWGG 2 cut(s) 128, 504
BstACI GRCGYC 1 cut(s) 363
BstAPI GCANNNNNTGC 7 cut(s) 459, 640, 676, 712, 748, 823, 859
BstBI TTCGAA 1 cut(s) 521
BstDEI CTNAG 2 cut(s) 213, 1010
BstF5I GGATG 7 cut(s) 655, 691, 727, 763, 802, 838, 1038
BstH2I RGCGCY 1 cut(s) 228
BstHHI GCGC 3 cut(s) 115, 227, 464
BstKTI GATC 1 cut(s) 499
BstMAI GTCTC 3 cut(s) 53, 315, 539
BstMBI GATC 1 cut(s) 496
BstNI CCWGG 2 cut(s) 128, 504
BstNSI RCATGY 1 cut(s) 614
BstSCI CCNGG 8 cut(s) 10, 126, 385, 502, 672, 783, 819, 855
BstSFI CTRYAG 1 cut(s) 1070
BstSLI GKGCMC 1 cut(s) 383
BstV1I GCAGC 4 cut(s) 16, 32, 112, 459
BstV2I GAAGAC 1 cut(s) 224
BsuRI GGCC 4 cut(s) 131, 149, 264, 402
BtrI CACGTC 1 cut(s) 378
BtsCI GGATG 7 cut(s) 655, 691, 727, 763, 802, 838, 1038
BtsIMutI CAGTG 6 cut(s) 212, 573, 669, 717, 753, 852
BveI ACCTGC 2 cut(s) 94, 403
CciI TCATGA 2 cut(s) 330, 537
CfoI GCGC 3 cut(s) 115, 227, 464
Cfr10I RCCGGY 7 cut(s) 643, 679, 715, 751, 790, 826, 862
Cfr13I GGNCC 4 cut(s) 130, 147, 263, 339
CseI GACGC 2 cut(s) 332, 604
Csp6I GTAC 1 cut(s) 250
CviAII CATG 5 cut(s) 151, 331, 418, 538, 611
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 2 cut(s) 213, 1010
DpnI GATC 1 cut(s) 498
DpnII GATC 1 cut(s) 496
DraIII CACNNNGTG 4 cut(s) 676, 787, 823, 859
DrdI GACNNNNNNGTC 1 cut(s) 362
DriI GACNNNNNGTC 1 cut(s) 367
DseDI GACNNNNNNGTC 1 cut(s) 362
EaeI YGGCCR 1 cut(s) 400
Eam1105I GACNNNNNGTC 1 cut(s) 367
EciI GGCGGA 3 cut(s) 61, 486, 921
Eco130I CCWWGG 2 cut(s) 229, 466
Eco31I GGTCTC 1 cut(s) 539
Eco47I GGWCC 1 cut(s) 339
Eco57I CTGAAG 1 cut(s) 606
EcoRII CCWGG 2 cut(s) 126, 502
EcoT14I CCWWGG 2 cut(s) 229, 466
ErhI CCWWGG 2 cut(s) 229, 466
Esp3I CGTCTC 1 cut(s) 315
FaeI CATG 5 cut(s) 154, 334, 421, 541, 614
FaiI YATR 6 cut(s) 152, 332, 419, 495, 539, 612
FaqI GGGAC 1 cut(s) 191
FatI CATG 5 cut(s) 150, 330, 417, 537, 610
FauI CCCGC 1 cut(s) 1025
FokI GGATG 7 cut(s) 642, 678, 714, 750, 789, 825, 1025
FspBI CTAG 3 cut(s) 188, 230, 318
GlaI GCGC 3 cut(s) 114, 226, 463
GsuI CTGGAG 1 cut(s) 110
HaeII RGCGCY 1 cut(s) 228
HaeIII GGCC 4 cut(s) 131, 149, 264, 402
HgaI GACGC 2 cut(s) 332, 604
HhaI GCGC 3 cut(s) 115, 227, 464
Hin1I GRCGYC 1 cut(s) 363
Hin1II CATG 5 cut(s) 154, 334, 421, 541, 614
Hin6I GCGC 3 cut(s) 113, 225, 462
HinP1I GCGC 3 cut(s) 113, 225, 462
HincII GTYRAC 2 cut(s) 375, 1052
HindII GTYRAC 2 cut(s) 375, 1052
HinfI GANTC 2 cut(s) 518, 541
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 5 cut(s) 339, 375, 381, 1052, 1067
Hpy188I TCNGA 5 cut(s) 660, 696, 732, 768, 807
Hpy188III TCNNGA 2 cut(s) 331, 538
Hpy8I GTNNAC 5 cut(s) 339, 375, 381, 1052, 1067
Hpy99I CGWCG 4 cut(s) 29, 365, 1047, 1050
HpyAV CCTTC 2 cut(s) 556, 924
HpyCH4IV ACGT 4 cut(s) 173, 363, 377, 1054
HpyCH4V TGCA 4 cut(s) 32, 381, 447, 881
HpyF3I CTNAG 2 cut(s) 213, 1010
HpySE526I ACGT 4 cut(s) 173, 363, 377, 1054
Hsp92I GRCGYC 1 cut(s) 363
Hsp92II CATG 5 cut(s) 154, 334, 421, 541, 614
HspAI GCGC 3 cut(s) 113, 225, 462
KpnI GGTACC 1 cut(s) 253
KroI GCCGGC 6 cut(s) 679, 715, 751, 790, 826, 862
KroNI GCCGGC 6 cut(s) 681, 717, 753, 792, 828, 864
Kzo9I GATC 1 cut(s) 496
LmnI GCTCC 1 cut(s) 244
Lsp1109I GCAGC 4 cut(s) 16, 32, 112, 459
LweI GCATC 3 cut(s) 156, 462, 1047
MaeI CTAG 3 cut(s) 188, 230, 318
MaeII ACGT 4 cut(s) 173, 363, 377, 1054
MaeIII GTNAC 4 cut(s) 106, 592, 995, 1001
MalI GATC 1 cut(s) 498
MbiI CCGCTC 1 cut(s) 247
MboI GATC 1 cut(s) 496
MboII GAAGA 3 cut(s) 229, 599, 939
MhlI GDGCHC 2 cut(s) 84, 383
MluCI AATT 2 cut(s) 490, 508
MmeI TCCRAC 3 cut(s) 282, 683, 791
MroNI GCCGGC 6 cut(s) 679, 715, 751, 790, 826, 862
MroXI GAANNNNTTC 1 cut(s) 545
MseI TTAA 1 cut(s) 1032
MslI CAYNNNNRTG 1 cut(s) 957
MspR9I CCNGG 8 cut(s) 12, 128, 387, 504, 674, 785, 821, 857
Mva1269I GAATGC 1 cut(s) 881
MvaI CCWGG 2 cut(s) 128, 504
NaeI GCCGGC 6 cut(s) 681, 717, 753, 792, 828, 864
NciI CCSGG 6 cut(s) 12, 387, 674, 785, 821, 857
NdeII GATC 1 cut(s) 496
NgoMIV GCCGGC 6 cut(s) 679, 715, 751, 790, 826, 862
NheI GCTAGC 1 cut(s) 187
NlaIII CATG 5 cut(s) 154, 334, 421, 541, 614
NlaIV GGNNCC 6 cut(s) 251, 265, 678, 789, 825, 861
NmuCI GTSAC 2 cut(s) 106, 592
NspI RCATGY 1 cut(s) 614
NspV TTCGAA 1 cut(s) 521
PagI TCATGA 2 cut(s) 330, 537
PaqCI CACCTGC 1 cut(s) 94
PcsI WCGNNNNNNNCGW 4 cut(s) 360, 1042, 1051, 1060
PctI GAATGC 1 cut(s) 881
PdiI GCCGGC 6 cut(s) 681, 717, 753, 792, 828, 864
PdmI GAANNNNTTC 1 cut(s) 545
PfeI GAWTC 2 cut(s) 518, 541
PflFI GACNNNGTC 1 cut(s) 326
Psp6I CCWGG 2 cut(s) 126, 502
PspGI CCWGG 2 cut(s) 126, 502
PspN4I GGNNCC 6 cut(s) 251, 265, 678, 789, 825, 861
PspPI GGNCC 4 cut(s) 130, 147, 263, 339
PsyI GACNNNGTC 1 cut(s) 326
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
RseI CAYNNNNRTG 1 cut(s) 957
SaqAI TTAA 1 cut(s) 1032
Sau3AI GATC 1 cut(s) 496
Sau96I GGNCC 4 cut(s) 130, 147, 263, 339
ScrFI CCNGG 8 cut(s) 12, 128, 387, 504, 674, 785, 821, 857
SduI GDGCHC 2 cut(s) 84, 383
SfaNI GCATC 3 cut(s) 156, 462, 1047
SfcI CTRYAG 1 cut(s) 1070
SfuI TTCGAA 1 cut(s) 521
SinI GGWCC 1 cut(s) 339
SmiMI CAYNNNNRTG 1 cut(s) 957
Sse9I AATT 2 cut(s) 490, 508
SspMI CTAG 3 cut(s) 188, 230, 318
StyD4I CCNGG 8 cut(s) 10, 126, 385, 502, 672, 783, 819, 855
StyI CCWWGG 2 cut(s) 229, 466
TaiI ACGT 4 cut(s) 176, 366, 380, 1057
TaqI TCGA 3 cut(s) 16, 360, 521
TaqII GACCGA 1 cut(s) 356
TasI AATT 2 cut(s) 490, 508
TauI GCSGC 9 cut(s) 402, 453, 634, 670, 706, 742, 817, 853, 898
TfiI GAWTC 2 cut(s) 518, 541
Tru1I TTAA 1 cut(s) 1032
Tru9I TTAA 1 cut(s) 1032
TscAI CASTG 6 cut(s) 212, 573, 669, 717, 753, 852
TseFI GTSAC 2 cut(s) 106, 592
TseI GCWGC 4 cut(s) 20, 29, 100, 447
Tsp45I GTSAC 2 cut(s) 106, 592
TspDTI ATGAA 1 cut(s) 554
TspGWI ACGGA 1 cut(s) 1031
TspRI CASTG 6 cut(s) 212, 573, 669, 717, 753, 852
Tth111I GACNNNGTC 1 cut(s) 326
VneI GTGCAC 1 cut(s) 379
VpaK11BI GGWCC 1 cut(s) 339
XceI RCATGY 1 cut(s) 614
XmaJI CCTAGG 1 cut(s) 229
XmnI GAANNNNTTC 1 cut(s) 545
XspI CTAG 3 cut(s) 188, 230, 318
ZraI GACGTC 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.