Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0001177

Physical Location & Seq

Genomic Coordinates Forward (+)

28535691 .. 28536374

Gene Structure 684 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00406110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGTCGGAGAAACAAGGCTTGAATGGAGCGTACTACGGCCCATCCCTCCCTCCCAAGAGGGAGTCCTACCAAAGCGTCGGCCACGGCGGAGGTCCCCTCGGCTGCTGCTGCAGCTGTATCTTCGGCCTCGTCTTCAAGCTCATCTTCACCGTCATCGTCTTCATGGGTCTCGCCATCTTTGTCTTCTGGATCATAGTCAAACCTCACCGTATCAAGTTCCACGTCACTGACGCCAACCTCACCCAGTTCAACTTCTCCTCAGGCAGCAACCTCCACTACAACCTCGCCATCAACCTCACCATCCGAAACCCTAACAAGAAGTTCGGCATCTACTACGACCGCATCGAAGCCAGAGCTAACTACGAGGGCCAGAGGTTCAGCACGATCACTCTCACCCCGTTTTACCAAGGACACAAAACCACCAACGCTTTGAACCCCGTGTTTAATGGACAGCAGTTGCTTGTTGGGTCCAATCTGCAGTTGGAGTATCAAAAGCAGACGAGTGCTGGGGTTTACGAAATTGAGATGAAGCTTTACATGAGGATTCGGTTCAAGTTCGGTCGAATCAAGACCGGAAAGTTCAAGCTCAGAGTTGAATGTGACTTGAAGGTTCCTTTGAGTACGAATGGGAATTCCGCAACTACTTTTGAGACCAAGAGTTGTGAAGTTGATTACTTTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

227

Amino Acids

25.75

Weight (kDa)

9.48

Isoelectric Point (pI)

33.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	99 - 200	1.8e-10	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35460 AT2G35980 AT3G11650 AT5G06320
fragaria_vesca	FvH4_6g20130 FvH4_6g20140
malus_domestica	MD12G1038600.v1.1 MD14G1037300.v1.1
prunus_persica	Prupe.6G357300_v2.0.a1 Prupe.7G097200_v2.0.a1
pyrus_communis	pycom14g03260
rosa_chinensis	RchiOBHm_Chr3g0475591 RchiOBHm_Chr3g0475631 RchiOBHm_Chr3g0475641 RchiOBHm_Chr3g0475651 RchiOBHm_Chr3g0475661
rosa_laevigata	RLG00000023825 RLG00000023826 RLG00000023827 RLG00000023828 RLG00000023830
rosa_multiflora	Rmu_co8195028.1_g000001 Rmu_sc0000539.1_g000033 Rmu_sc0000539.1_g000043 Rmu_sc0000539.1_g000048 Rmu_sc0000539.1_g000055
rosa_roxburghii	Rroxscaffold_6G00406030 Rroxscaffold_6G00406040 Rroxscaffold_6G00406070 Rroxscaffold_6G00406080 Rroxscaffold_6G00406100 Rroxscaffold_6G00406110
rosa_rugosa	Rorug03G0150500 Rorug03G0150500 Rorug03G0150600 Rorug03G0150700 Rorug03G0150800 Rorug03G0150800
rosa_samantha	Rh3AG200100 Rh3AG200200 Rh3AG200300 Rh3BG230500 Rh3BG230600 Rh3BG230700 Rh3CG224800 Rh3CG225000 Rh3CG225100 Rh3CG225200 Rh3CG225300 Rh3DG225600 Rh3DG225700 Rh3DG225800
rosa_wichuraiana	Rw3G018150 Rw3G018170 Rw3G018180 Rw3G018190 Rw3G018200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	87, 340, 636
AclWI	GGATC	1 cut(s)	197
AcoI	YGGCCR	1 cut(s)	79
AcsI	RAATTY	1 cut(s)	631
AcyI	GRCGYC	1 cut(s)	231
AfaI	GTAC	2 cut(s)	32, 622
AgsI	TTSAA	8 cut(s)	22, 136, 250, 433, 553, 583, 596, 607
AjiI	CACGTC	1 cut(s)	223
AluBI	AGCT	5 cut(s)	114, 139, 356, 532, 586
AluI	AGCT	5 cut(s)	114, 139, 356, 532, 586
Alw26I	GTCTC	2 cut(s)	173, 644
AlwI	GGATC	1 cut(s)	197
AoxI	GGCC	4 cut(s)	37, 79, 124, 367
ApeKI	GCWGC	5 cut(s)	102, 105, 108, 111, 264
ApoI	RAATTY	1 cut(s)	631
AspS9I	GGNCC	4 cut(s)	38, 92, 367, 468
AsuHPI	GGTGA	5 cut(s)	139, 197, 232, 289, 385
AvaII	GGWCC	2 cut(s)	92, 468
AxyI	CCTNAGG	1 cut(s)	259
BbsI	GAAGAC	3 cut(s)	124, 151, 175
BbvI	GCAGC	5 cut(s)	89, 92, 95, 123, 276
BccI	CCATC	4 cut(s)	49, 182, 296, 308
BceAI	ACGGC	2 cut(s)	52, 100
BcoDI	GTCTC	2 cut(s)	173, 644
BfmI	CTRYAG	2 cut(s)	109, 476
BisI	GCNGC	5 cut(s)	103, 106, 109, 112, 265
BlsI	GCNGC	5 cut(s)	104, 107, 110, 113, 266
Bme18I	GGWCC	2 cut(s)	92, 468
BmgBI	CACGTC	1 cut(s)	223
BmgT120I	GGNCC	4 cut(s)	38, 92, 367, 468
BmiI	GGNNCC	3 cut(s)	94, 469, 612
BmrI	ACTGGG	1 cut(s)	238
BmsI	GCATC	2 cut(s)	336, 351
BmuI	ACTGGG	1 cut(s)	238
BpiI	GAAGAC	3 cut(s)	124, 151, 175
BplI	GAGNNNNNCTC	2 cut(s)	81, 113
BsaHI	GRCGYC	1 cut(s)	231
BsaI	GGTCTC	2 cut(s)	173, 644
BsaJI	CCNNGG	3 cut(s)	82, 97, 406
BsaWI	WCCGGW	1 cut(s)	572
Bse1I	ACTGG	1 cut(s)	244
Bse21I	CCTNAGG	1 cut(s)	259
BseDI	CCNNGG	3 cut(s)	82, 97, 406
BseGI	GGATG	2 cut(s)	41, 300
BseMII	CTCAG	2 cut(s)	273, 601
BseNI	ACTGG	1 cut(s)	244
BseRI	GAGGAG	1 cut(s)	247
BseXI	GCAGC	5 cut(s)	89, 92, 95, 123, 276
BseYI	CCCAGC	1 cut(s)	506
Bsh1285I	CGRYCG	2 cut(s)	340, 562
BshFI	GGCC	4 cut(s)	39, 81, 126, 369
BsiEI	CGRYCG	2 cut(s)	340, 562
BsiSI	CCGG	1 cut(s)	573
BslFI	GGGAC	1 cut(s)	78
BsmAI	GTCTC	2 cut(s)	173, 644
BsmFI	GGGAC	1 cut(s)	78
BsnI	GGCC	4 cut(s)	39, 81, 126, 369
Bso31I	GGTCTC	2 cut(s)	173, 644
Bsp143I	GATC	2 cut(s)	189, 384
BspACI	CCGC	3 cut(s)	87, 340, 636
BspANI	GGCC	4 cut(s)	39, 81, 126, 369
BspCNI	CTCAG	2 cut(s)	272, 600
BspLI	GGNNCC	3 cut(s)	94, 469, 612
BspMAI	CTGCAG	2 cut(s)	113, 480
BspPI	GGATC	1 cut(s)	197
BspTNI	GGTCTC	2 cut(s)	173, 644
BsrI	ACTGG	1 cut(s)	244
BssECI	CCNNGG	3 cut(s)	82, 97, 406
BssMI	GATC	2 cut(s)	189, 384
BssNI	GRCGYC	1 cut(s)	231
BssT1I	CCWWGG	1 cut(s)	406
Bst4CI	ACNGT	2 cut(s)	151, 209
BstACI	GRCGYC	1 cut(s)	231
BstDEI	CTNAG	2 cut(s)	259, 587
BstDSI	CCRYGG	1 cut(s)	82
BstF5I	GGATG	2 cut(s)	41, 300
BstKTI	GATC	2 cut(s)	192, 387
BstMAI	GTCTC	2 cut(s)	173, 644
BstMBI	GATC	2 cut(s)	189, 384
BstMCI	CGRYCG	2 cut(s)	340, 562
BstMWI	GCNNNNNNNGC	2 cut(s)	108, 111
BstSFI	CTRYAG	2 cut(s)	109, 476
BstV1I	GCAGC	5 cut(s)	89, 92, 95, 123, 276
BstV2I	GAAGAC	3 cut(s)	124, 151, 175
Bsu36I	CCTNAGG	1 cut(s)	259
BsuRI	GGCC	4 cut(s)	39, 81, 126, 369
BtgI	CCRYGG	1 cut(s)	82
BtrI	CACGTC	1 cut(s)	223
BtsCI	GGATG	2 cut(s)	41, 300
BtsIMutI	CAGTG	1 cut(s)	225
Cfr13I	GGNCC	4 cut(s)	38, 92, 367, 468
CseI	GACGC	2 cut(s)	64, 239
Csp6I	GTAC	2 cut(s)	31, 621
CviAII	CATG	2 cut(s)	163, 538
CviQI	GTAC	2 cut(s)	31, 621
DdeI	CTNAG	2 cut(s)	259, 587
DpnI	GATC	2 cut(s)	191, 386
DpnII	GATC	2 cut(s)	189, 384
EaeI	YGGCCR	1 cut(s)	79
EciI	GGCGGA	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	406
Eco31I	GGTCTC	2 cut(s)	173, 644
Eco47I	GGWCC	2 cut(s)	92, 468
Eco81I	CCTNAGG	1 cut(s)	259
EcoO109I	RGGNCCY	1 cut(s)	92
EcoRI	GAATTC	1 cut(s)	631
EcoT14I	CCWWGG	1 cut(s)	406
ErhI	CCWWGG	1 cut(s)	406
FaeI	CATG	2 cut(s)	166, 541
FaiI	YATR	3 cut(s)	164, 194, 539
FalI	AAGNNNNNCTT	2 cut(s)	128, 160
FaqI	GGGAC	1 cut(s)	78
FatI	CATG	2 cut(s)	162, 537
Fnu4HI	GCNGC	5 cut(s)	103, 106, 109, 112, 265
FokI	GGATG	2 cut(s)	28, 287
Fsp4HI	GCNGC	5 cut(s)	103, 106, 109, 112, 265
GluI	GCNGC	5 cut(s)	103, 106, 109, 112, 265
GsaI	CCCAGC	1 cut(s)	510
HaeIII	GGCC	4 cut(s)	39, 81, 126, 369
HapII	CCGG	1 cut(s)	573
HgaI	GACGC	2 cut(s)	64, 239
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	2 cut(s)	166, 541
HindIII	AAGCTT	1 cut(s)	530
HinfI	GANTC	3 cut(s)	62, 544, 564
HpaII	CCGG	1 cut(s)	573
HphI	GGTGA	5 cut(s)	139, 197, 232, 289, 385
Hpy166II	GTNNAC	1 cut(s)	514
Hpy188I	TCNGA	3 cut(s)	7, 305, 590
Hpy188III	TCNNGA	2 cut(s)	187, 568
Hpy8I	GTNNAC	1 cut(s)	514
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	1 cut(s)	601
HpyCH4III	ACNGT	2 cut(s)	151, 209
HpyCH4IV	ACGT	1 cut(s)	222
HpyCH4V	TGCA	2 cut(s)	111, 478
HpyF10VI	GCNNNNNNNGC	2 cut(s)	108, 111
HpyF3I	CTNAG	2 cut(s)	259, 587
HpySE526I	ACGT	1 cut(s)	222
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	2 cut(s)	166, 541
Kzo9I	GATC	2 cut(s)	189, 384
LmnI	GCTCC	1 cut(s)	26
LpnPI	CCDG	7 cut(s)	172, 246, 257, 364, 383, 492, 586
Lsp1109I	GCAGC	5 cut(s)	89, 92, 95, 123, 276
LweI	GCATC	2 cut(s)	336, 351
MaeII	ACGT	1 cut(s)	222
MaeIII	GTNAC	2 cut(s)	223, 599
MalI	GATC	2 cut(s)	191, 386
MboI	GATC	2 cut(s)	189, 384
MboII	GAAGA	5 cut(s)	112, 124, 136, 151, 175
MluCI	AATT	3 cut(s)	519, 631, 679
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	1 cut(s)	462
MseI	TTAA	2 cut(s)	444, 678
MspA1I	CMGCKG	1 cut(s)	114
MspI	CCGG	1 cut(s)	573
MwoI	GCNNNNNNNGC	2 cut(s)	108, 111
NdeII	GATC	2 cut(s)	189, 384
NlaIII	CATG	2 cut(s)	166, 541
NlaIV	GGNNCC	3 cut(s)	94, 469, 612
NmeAIII	GCCGAG	1 cut(s)	78
NmuCI	GTSAC	2 cut(s)	223, 599
PcsI	WCGNNNNNNNCGW	1 cut(s)	342
PfeI	GAWTC	2 cut(s)	544, 564
PkrI	GCNGC	5 cut(s)	104, 107, 110, 113, 266
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
PpuMI	RGGWCCY	1 cut(s)	92
Psp5II	RGGWCCY	1 cut(s)	92
PspFI	CCCAGC	1 cut(s)	506
PspN4I	GGNNCC	3 cut(s)	94, 469, 612
PspPI	GGNCC	4 cut(s)	38, 92, 367, 468
PspPPI	RGGWCCY	1 cut(s)	92
PstI	CTGCAG	2 cut(s)	113, 480
PvuII	CAGCTG	1 cut(s)	114
RsaI	GTAC	2 cut(s)	32, 622
RsaNI	GTAC	2 cut(s)	31, 621
SaqAI	TTAA	2 cut(s)	444, 678
SatI	GCNGC	5 cut(s)	103, 106, 109, 112, 265
Sau3AI	GATC	2 cut(s)	189, 384
Sau96I	GGNCC	4 cut(s)	38, 92, 367, 468
SchI	GAGTC	1 cut(s)	71
SfaNI	GCATC	2 cut(s)	336, 351
SfcI	CTRYAG	2 cut(s)	109, 476
SinI	GGWCC	2 cut(s)	92, 468
Sse9I	AATT	3 cut(s)	519, 631, 679
SsiI	CCGC	3 cut(s)	87, 340, 636
StyI	CCWWGG	1 cut(s)	406
TaaI	ACNGT	2 cut(s)	151, 209
TaiI	ACGT	1 cut(s)	225
TaqI	TCGA	2 cut(s)	345, 562
TaqII	GACCGA	1 cut(s)	548
TasI	AATT	3 cut(s)	519, 631, 679
TfiI	GAWTC	2 cut(s)	544, 564
Tru1I	TTAA	2 cut(s)	444, 678
Tru9I	TTAA	2 cut(s)	444, 678
TscAI	CASTG	1 cut(s)	232
TseFI	GTSAC	2 cut(s)	223, 599
TseI	GCWGC	5 cut(s)	102, 105, 108, 111, 264
Tsp45I	GTSAC	2 cut(s)	223, 599
TspDTI	ATGAA	2 cut(s)	151, 542
TspRI	CASTG	1 cut(s)	232
VpaK11BI	GGWCC	2 cut(s)	92, 468
XapI	RAATTY	1 cut(s)	631
XcmI	CCANNNNNNNNNTGG	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.