Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0001177

Physical Location & Seq

Genomic Coordinates Forward (+)

12865779 .. 12867908

Gene Structure 2130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G097200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 699 bp

ATGTCAGAGAAACAATCTCATTTGAACGGGGCCTACTACGGCCCCTCAATCCCACCCAAATCCCAAGCCTACCACCGCCATGGCCGTGGCAGCGACCCCCTCGGCTGCTGCTGCGGCTGCATCTTCAGCCTTATTTTCAAGCTCATTATGACCGCCGTCGTCATAGTGGGCCTGGCCTTTTTCATCTTCTGGCTCATAGTCCGCCCCAACCACATCAAGTTCCACGTCACCGAAGCCCACCTCACCCAATTCAACTTCTCCAATGACAGCACCCTCCACTACAACCTCGCCCTCAACCTCACCATCCGCAACCCCAACAAGAAGATCGGGGTCTACTACGACCGCATCGAGGCCAGGGCCATCTACGAGGACCAGAGGTTCAGCACGTACACCTCGACGACGCCCTTTTACCAAGGGCACAAGACAACGAACGTGGTGAACCCGGTGTTCCAGGGCCAGCAGGTGATCCCAGACACGAAAGTGCTCTCCGAGTACAATGAGCAGAAGAATAGTGGGGTTTACGAGATCGACGTCAAGCTTTACCTTCGGGTTCGATTCAAATTCGGCTTGATCAAGACCGGCAAGTTCAAGCCCAGGATTAAATGTGGGTTGAAGGTTCCTTTGACTCAGAATGGGAGCTCATCAGTTAGCACTTTCGAGACTACCAAGTGTGACGTTGATTACTTCAAATCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

233

Amino Acids

26.47

Weight (kDa)

9.43

Isoelectric Point (pI)

25.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35460 AT2G35980 AT3G11650 AT5G06320
fragaria_vesca	FvH4_6g20130 FvH4_6g20140
malus_domestica	MD12G1038600.v1.1 MD14G1037300.v1.1
prunus_persica	Prupe.6G357300_v2.0.a1 Prupe.7G097200_v2.0.a1
pyrus_communis	pycom14g03260
rosa_chinensis	RchiOBHm_Chr3g0475591 RchiOBHm_Chr3g0475631 RchiOBHm_Chr3g0475641 RchiOBHm_Chr3g0475651 RchiOBHm_Chr3g0475661
rosa_laevigata	RLG00000023825 RLG00000023826 RLG00000023827 RLG00000023828 RLG00000023830
rosa_multiflora	Rmu_co8195028.1_g000001 Rmu_sc0000539.1_g000033 Rmu_sc0000539.1_g000043 Rmu_sc0000539.1_g000048 Rmu_sc0000539.1_g000055
rosa_roxburghii	Rroxscaffold_6G00406030 Rroxscaffold_6G00406040 Rroxscaffold_6G00406070 Rroxscaffold_6G00406080 Rroxscaffold_6G00406100 Rroxscaffold_6G00406110
rosa_rugosa	Rorug03G0150500 Rorug03G0150500 Rorug03G0150600 Rorug03G0150700 Rorug03G0150800 Rorug03G0150800
rosa_samantha	Rh3AG200100 Rh3AG200200 Rh3AG200300 Rh3BG230500 Rh3BG230600 Rh3BG230700 Rh3CG224800 Rh3CG225000 Rh3CG225100 Rh3CG225200 Rh3CG225300 Rh3DG225600 Rh3DG225700 Rh3DG225800
rosa_wichuraiana	Rw3G018150 Rw3G018170 Rw3G018180 Rw3G018190 Rw3G018200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	451
AatII	GACGTC	1 cut(s)	534
Acc36I	ACCTGC	1 cut(s)	451
AccI	GTMKAC	1 cut(s)	333
AciI	CCGC	6 cut(s)	76, 114, 153, 202, 307, 343
AclWI	GGATC	1 cut(s)	460
AcoI	YGGCCR	1 cut(s)	82
AcsI	RAATTY	1 cut(s)	560
AcuI	CTGAAG	1 cut(s)	109
AcyI	GRCGYC	2 cut(s)	401, 531
AfaI	GTAC	2 cut(s)	389, 494
AfiI	CCNNNNNNNGG	1 cut(s)	349
AgsI	TTSAA	7 cut(s)	25, 139, 253, 559, 589, 613, 688
AjiI	CACGTC	1 cut(s)	226
AjnI	CCWGG	4 cut(s)	171, 353, 450, 593
AleI	CACNNNNGTG	1 cut(s)	479
AloI	GAACNNNNNNTCC	2 cut(s)	362, 394
AluBI	AGCT	3 cut(s)	142, 538, 639
AluI	AGCT	3 cut(s)	142, 538, 639
Alw21I	GWGCWC	2 cut(s)	486, 641
Alw26I	GTCTC	1 cut(s)	653
AlwI	GGATC	1 cut(s)	460
AoxI	GGCC	8 cut(s)	30, 40, 82, 169, 174, 351, 357, 454
ApeKI	GCWGC	5 cut(s)	90, 105, 108, 111, 117
ApoI	RAATTY	1 cut(s)	560
AspS9I	GGNCC	6 cut(s)	30, 41, 169, 357, 370, 454
AsuC2I	CCSGG	1 cut(s)	443
AsuHPI	GGTGA	5 cut(s)	220, 235, 292, 448, 475
AvaII	GGWCC	1 cut(s)	370
BaeGI	GKGCMC	1 cut(s)	420
BanII	GRGCYC	1 cut(s)	641
Bbv12I	GWGCWC	2 cut(s)	486, 641
BbvI	GCAGC	5 cut(s)	92, 95, 98, 102, 104
BccI	CCATC	2 cut(s)	311, 368
BceAI	ACGGC	3 cut(s)	55, 69, 140
BciT130I	CCWGG	4 cut(s)	173, 355, 452, 595
BclI	TGATCA	1 cut(s)	570
BcnI	CCSGG	1 cut(s)	443
BcoDI	GTCTC	1 cut(s)	653
BfuAI	ACCTGC	1 cut(s)	451
BisI	GCNGC	6 cut(s)	91, 106, 109, 112, 115, 118
BlsI	GCNGC	6 cut(s)	92, 107, 110, 113, 116, 119
Bme1390I	CCNGG	5 cut(s)	173, 355, 443, 452, 595
Bme18I	GGWCC	1 cut(s)	370
BmgBI	CACGTC	1 cut(s)	226
BmgT120I	GGNCC	6 cut(s)	30, 41, 169, 357, 370, 454
BmiI	GGNNCC	3 cut(s)	31, 43, 618
BmrFI	CCNGG	5 cut(s)	173, 355, 443, 452, 595
BmsI	GCATC	2 cut(s)	129, 354
BoxI	GACNNNNGTC	1 cut(s)	155
BpuMI	CCSGG	1 cut(s)	443
BsaAI	YACGTR	1 cut(s)	387
BsaHI	GRCGYC	2 cut(s)	401, 531
BsaJI	CCNNGG	7 cut(s)	79, 85, 100, 354, 412, 451, 593
Bsc4I	CCNNNNNNNGG	1 cut(s)	349
Bse118I	RCCGGY	1 cut(s)	578
BseBI	CCWGG	4 cut(s)	173, 355, 452, 595
BseDI	CCNNGG	7 cut(s)	79, 85, 100, 354, 412, 451, 593
BseGI	GGATG	1 cut(s)	303
BseLI	CCNNNNNNNGG	1 cut(s)	349
BseMII	CTCAG	1 cut(s)	641
BseSI	GKGCMC	1 cut(s)	420
BseXI	GCAGC	5 cut(s)	92, 95, 98, 102, 104
Bsh1285I	CGRYCG	1 cut(s)	343
BshFI	GGCC	8 cut(s)	32, 42, 84, 171, 176, 353, 359, 456
BsiEI	CGRYCG	1 cut(s)	343
BsiHKAI	GWGCWC	2 cut(s)	486, 641
BsiSI	CCGG	2 cut(s)	443, 579
BslI	CCNNNNNNNGG	1 cut(s)	349
BsmAI	GTCTC	1 cut(s)	653
BsnI	GGCC	8 cut(s)	32, 42, 84, 171, 176, 353, 359, 456
Bsp1286I	GDGCHC	3 cut(s)	420, 486, 641
Bsp143I	GATC	4 cut(s)	324, 465, 525, 570
Bsp19I	CCATGG	1 cut(s)	79
BspACI	CCGC	6 cut(s)	76, 114, 153, 202, 307, 343
BspANI	GGCC	8 cut(s)	32, 42, 84, 171, 176, 353, 359, 456
BspCNI	CTCAG	1 cut(s)	640
BspLI	GGNNCC	3 cut(s)	31, 43, 618
BspMI	ACCTGC	1 cut(s)	451
BspPI	GGATC	1 cut(s)	460
BsrFI	RCCGGY	1 cut(s)	578
BssAI	RCCGGY	1 cut(s)	578
BssECI	CCNNGG	7 cut(s)	79, 85, 100, 354, 412, 451, 593
BssMI	GATC	4 cut(s)	324, 465, 525, 570
BssNI	GRCGYC	2 cut(s)	401, 531
BssT1I	CCWWGG	2 cut(s)	79, 412
Bst2UI	CCWGG	4 cut(s)	173, 355, 452, 595
BstACI	GRCGYC	2 cut(s)	401, 531
BstBAI	YACGTR	1 cut(s)	387
BstC8I	GCNNGC	1 cut(s)	458
BstDEI	CTNAG	1 cut(s)	627
BstDSI	CCRYGG	2 cut(s)	79, 85
BstF5I	GGATG	1 cut(s)	303
BstKTI	GATC	4 cut(s)	327, 468, 528, 573
BstMAI	GTCTC	1 cut(s)	653
BstMBI	GATC	4 cut(s)	324, 465, 525, 570
BstMCI	CGRYCG	1 cut(s)	343
BstMWI	GCNNNNNNNGC	5 cut(s)	90, 111, 114, 117, 126
BstNI	CCWGG	4 cut(s)	173, 355, 452, 595
BstPAI	GACNNNNGTC	1 cut(s)	155
BstSCI	CCNGG	5 cut(s)	171, 353, 441, 450, 593
BstSLI	GKGCMC	1 cut(s)	420
BstV1I	GCAGC	5 cut(s)	92, 95, 98, 102, 104
BstXI	CCANNNNNNTGG	2 cut(s)	80, 86
BsuRI	GGCC	8 cut(s)	32, 42, 84, 171, 176, 353, 359, 456
BtgI	CCRYGG	2 cut(s)	79, 85
BtrI	CACGTC	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	303
BveI	ACCTGC	1 cut(s)	451
Cac8I	GCNNGC	1 cut(s)	458
Cfr10I	RCCGGY	1 cut(s)	578
Cfr13I	GGNCC	6 cut(s)	30, 41, 169, 357, 370, 454
CseI	GACGC	1 cut(s)	409
Csp6I	GTAC	2 cut(s)	388, 493
CspCI	CAANNNNNGTGG	2 cut(s)	414, 449
CviAII	CATG	1 cut(s)	80
CviQI	GTAC	2 cut(s)	388, 493
DdeI	CTNAG	1 cut(s)	627
DpnI	GATC	4 cut(s)	326, 467, 527, 572
DpnII	GATC	4 cut(s)	324, 465, 525, 570
EaeI	YGGCCR	1 cut(s)	82
EciI	GGCGGA	1 cut(s)	191
Ecl136II	GAGCTC	1 cut(s)	639
Eco130I	CCWWGG	2 cut(s)	79, 412
Eco24I	GRGCYC	1 cut(s)	641
Eco47I	GGWCC	1 cut(s)	370
Eco53kI	GAGCTC	1 cut(s)	639
Eco57I	CTGAAG	1 cut(s)	109
EcoICRI	GAGCTC	1 cut(s)	639
EcoO109I	RGGNCCY	1 cut(s)	30
EcoRII	CCWGG	4 cut(s)	171, 353, 450, 593
EcoT14I	CCWWGG	2 cut(s)	79, 412
EcoT38I	GRGCYC	1 cut(s)	641
ErhI	CCWWGG	2 cut(s)	79, 412
FaeI	CATG	1 cut(s)	83
FaiI	YATR	4 cut(s)	81, 149, 164, 197
FatI	CATG	1 cut(s)	79
FbaI	TGATCA	1 cut(s)	570
FblI	GTMKAC	1 cut(s)	333
Fnu4HI	GCNGC	6 cut(s)	91, 106, 109, 112, 115, 118
FokI	GGATG	1 cut(s)	290
FriOI	GRGCYC	1 cut(s)	641
Fsp4HI	GCNGC	6 cut(s)	91, 106, 109, 112, 115, 118
GluI	GCNGC	6 cut(s)	91, 106, 109, 112, 115, 118
HaeIII	GGCC	8 cut(s)	32, 42, 84, 171, 176, 353, 359, 456
HapII	CCGG	2 cut(s)	443, 579
HgaI	GACGC	1 cut(s)	409
Hin1I	GRCGYC	2 cut(s)	401, 531
Hin1II	CATG	1 cut(s)	83
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	2 cut(s)	555, 625
HpaII	CCGG	2 cut(s)	443, 579
HphI	GGTGA	5 cut(s)	220, 235, 292, 448, 475
Hpy166II	GTNNAC	4 cut(s)	334, 390, 439, 520
Hpy188I	TCNGA	3 cut(s)	7, 490, 630
Hpy188III	TCNNGA	2 cut(s)	574, 658
Hpy8I	GTNNAC	4 cut(s)	334, 390, 439, 520
Hpy99I	CGWCG	4 cut(s)	161, 400, 403, 533
HpyAV	CCTTC	2 cut(s)	554, 607
HpyCH4IV	ACGT	5 cut(s)	225, 386, 432, 531, 675
HpyCH4V	TGCA	1 cut(s)	120
HpyF10VI	GCNNNNNNNGC	5 cut(s)	90, 111, 114, 117, 126
HpyF3I	CTNAG	1 cut(s)	627
HpySE526I	ACGT	5 cut(s)	225, 386, 432, 531, 675
Hsp92I	GRCGYC	2 cut(s)	401, 531
Hsp92II	CATG	1 cut(s)	83
Ksp22I	TGATCA	1 cut(s)	570
Kzo9I	GATC	4 cut(s)	324, 465, 525, 570
LmnI	GCTCC	1 cut(s)	636
Lsp1109I	GCAGC	5 cut(s)	92, 95, 98, 102, 104
LweI	GCATC	2 cut(s)	129, 354
MaeII	ACGT	5 cut(s)	225, 386, 432, 531, 675
MaeIII	GTNAC	2 cut(s)	226, 671
MalI	GATC	4 cut(s)	326, 467, 527, 572
MboI	GATC	4 cut(s)	324, 465, 525, 570
MboII	GAAGA	4 cut(s)	115, 178, 334, 517
MhlI	GDGCHC	3 cut(s)	420, 486, 641
MluCI	AATT	2 cut(s)	248, 560
MlyI	GAGTC	1 cut(s)	619
MseI	TTAA	1 cut(s)	600
MslI	CAYNNNNRTG	3 cut(s)	78, 84, 479
MspI	CCGG	2 cut(s)	443, 579
MspR9I	CCNGG	5 cut(s)	173, 355, 443, 452, 595
MvaI	CCWGG	4 cut(s)	173, 355, 452, 595
MwoI	GCNNNNNNNGC	5 cut(s)	90, 111, 114, 117, 126
NciI	CCSGG	1 cut(s)	443
NcoI	CCATGG	1 cut(s)	79
NdeII	GATC	4 cut(s)	324, 465, 525, 570
NlaIII	CATG	1 cut(s)	83
NlaIV	GGNNCC	3 cut(s)	31, 43, 618
NmeAIII	GCCGAG	1 cut(s)	81
NmuCI	GTSAC	2 cut(s)	226, 671
OliI	CACNNNNGTG	1 cut(s)	479
PaqCI	CACCTGC	1 cut(s)	451
PcsI	WCGNNNNNNNCGW	3 cut(s)	345, 392, 528
PfeI	GAWTC	1 cut(s)	555
PkrI	GCNGC	6 cut(s)	92, 107, 110, 113, 116, 119
PleI	GAGTC	1 cut(s)	619
PpsI	GAGTC	1 cut(s)	619
Ppu21I	YACGTR	1 cut(s)	387
PshAI	GACNNNNGTC	1 cut(s)	155
Psp124BI	GAGCTC	1 cut(s)	641
Psp6I	CCWGG	4 cut(s)	171, 353, 450, 593
PspGI	CCWGG	4 cut(s)	171, 353, 450, 593
PspN4I	GGNNCC	3 cut(s)	31, 43, 618
PspPI	GGNCC	6 cut(s)	30, 41, 169, 357, 370, 454
PsrI	GAACNNNNNNTAC	2 cut(s)	17, 49
RsaI	GTAC	2 cut(s)	389, 494
RsaNI	GTAC	2 cut(s)	388, 493
RseI	CAYNNNNRTG	3 cut(s)	78, 84, 479
SacI	GAGCTC	1 cut(s)	641
SaqAI	TTAA	1 cut(s)	600
SatI	GCNGC	6 cut(s)	91, 106, 109, 112, 115, 118
Sau3AI	GATC	4 cut(s)	324, 465, 525, 570
Sau96I	GGNCC	6 cut(s)	30, 41, 169, 357, 370, 454
SchI	GAGTC	1 cut(s)	619
ScrFI	CCNGG	5 cut(s)	173, 355, 443, 452, 595
SduI	GDGCHC	3 cut(s)	420, 486, 641
SfaNI	GCATC	2 cut(s)	129, 354
SinI	GGWCC	1 cut(s)	370
SmiMI	CAYNNNNRTG	3 cut(s)	78, 84, 479
Sse9I	AATT	2 cut(s)	248, 560
SsiI	CCGC	6 cut(s)	76, 114, 153, 202, 307, 343
SstI	GAGCTC	1 cut(s)	641
StyD4I	CCNGG	5 cut(s)	171, 353, 441, 450, 593
StyI	CCWWGG	2 cut(s)	79, 412
TaiI	ACGT	5 cut(s)	228, 389, 435, 534, 678
TaqI	TCGA	5 cut(s)	348, 395, 528, 553, 657
TasI	AATT	2 cut(s)	248, 560
TatI	WGTACW	1 cut(s)	492
TauI	GCSGC	1 cut(s)	117
TfiI	GAWTC	1 cut(s)	555
Tru1I	TTAA	1 cut(s)	600
Tru9I	TTAA	1 cut(s)	600
TseFI	GTSAC	2 cut(s)	226, 671
TseI	GCWGC	5 cut(s)	90, 105, 108, 111, 117
Tsp45I	GTSAC	2 cut(s)	226, 671
TspDTI	ATGAA	1 cut(s)	172
VpaK11BI	GGWCC	1 cut(s)	370
XapI	RAATTY	1 cut(s)	560
XmiI	GTMKAC	1 cut(s)	333
ZraI	GACGTC	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.