Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001177

Physical Location & Seq

Genomic Coordinates Reverse (-)

3675953 .. 3677279

Gene Structure 1327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G11650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGGGTCCAAACAACCATACCTAAACGGCGCGTACTACGGACCATCAATTCCACCACCGCCTAAGGCTCACCGCAGCTATAACTCACCTGGATTCGGATGCTGTTGCTTCAGCTGCCTCGGAAGCTGTCTACGTTGCTGCGGTTGCTGCATCTTAAGCCTGATCTGCAACATCCTCATAGCTGTAGCCGTAATCCTCGGAGTCGCCGCTCTTATCCTCTGGCTCATCTTCCGTCCAAACGCCGTCAAATTCTACGTCGCCGACGCTAATCTGAACCGATTCAGCTTCGATCCAAACAACAACCTCCATTACAGTCTCGATCTCAATTTCACAATCCGTAACCCTAATCAACGAGTCGGAGTCTACTACGATGAGTTCTCGGTTAGTGGCTATTACGGAGATCAGAGATTCGGATCTGCGAACGTTTCGTCGTTTTATCAAGGGCATAAGAATACGACGGTGATTTTAACCAAAATTGAAGGACAGAATCTGGTGGTGCTCGGCGACGGAGCGAGAACAGATCTAAAAGATGATGAGAAATCTGGGATTTATCGGATTAATGCGAAATTGAGGCTAAGTGTTAGGTTTAAGTTTTGGTTTATAAAGTCGTGGAAGCTTAAACCAAAGATTAAGTGTGATGATCTTAAGATTCCTCTTGGTTCCTCTAATTCTACAGGAGGGTTTAAGTTTCAACCGGTGCAGTGTGACTTTGACTTATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0007568 GO:0008150 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0010033 GO:0010150 GO:0012505 GO:0014070 GO:0016020 GO:0030054 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0045087 GO:0046658 GO:0046677 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0090693 GO:0098542 GO:0098588 GO:0098805 GO:0099402 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

240

Amino Acids

26.76

Weight (kDa)

9.11

Isoelectric Point (pI)

36.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	110 - 212	1.9e-13	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35460 AT2G35980 AT3G11650 AT5G06320
fragaria_vesca	FvH4_6g20130 FvH4_6g20140
malus_domestica	MD12G1038600.v1.1 MD14G1037300.v1.1
prunus_persica	Prupe.6G357300_v2.0.a1 Prupe.7G097200_v2.0.a1
pyrus_communis	pycom14g03260
rosa_chinensis	RchiOBHm_Chr3g0475591 RchiOBHm_Chr3g0475631 RchiOBHm_Chr3g0475641 RchiOBHm_Chr3g0475651 RchiOBHm_Chr3g0475661
rosa_laevigata	RLG00000023825 RLG00000023826 RLG00000023827 RLG00000023828 RLG00000023830
rosa_multiflora	Rmu_co8195028.1_g000001 Rmu_sc0000539.1_g000033 Rmu_sc0000539.1_g000043 Rmu_sc0000539.1_g000048 Rmu_sc0000539.1_g000055
rosa_roxburghii	Rroxscaffold_6G00406030 Rroxscaffold_6G00406040 Rroxscaffold_6G00406070 Rroxscaffold_6G00406080 Rroxscaffold_6G00406100 Rroxscaffold_6G00406110
rosa_rugosa	Rorug03G0150500 Rorug03G0150500 Rorug03G0150600 Rorug03G0150700 Rorug03G0150800 Rorug03G0150800
rosa_samantha	Rh3AG200100 Rh3AG200200 Rh3AG200300 Rh3BG230500 Rh3BG230600 Rh3BG230700 Rh3CG224800 Rh3CG225000 Rh3CG225100 Rh3CG225200 Rh3CG225300 Rh3DG225600 Rh3DG225700 Rh3DG225800
rosa_wichuraiana	Rw3G018150 Rw3G018170 Rw3G018180 Rw3G018190 Rw3G018200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	602
AccBSI	CCGCTC	1 cut(s)	209
AccI	GTMKAC	2 cut(s)	130, 363
AccII	CGCG	1 cut(s)	32
AciI	CCGC	4 cut(s)	59, 73, 141, 207
AclI	AACGTT	1 cut(s)	423
AclWI	GGATC	2 cut(s)	284, 421
AcsI	RAATTY	1 cut(s)	248
AcuI	CTGAAG	1 cut(s)	94
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	1 cut(s)	95
AflII	CTTAAG	2 cut(s)	154, 644
AgeI	ACCGGT	1 cut(s)	694
AgsI	TTSAA	2 cut(s)	479, 692
AjnI	CCWGG	1 cut(s)	88
AluBI	AGCT	6 cut(s)	78, 114, 126, 182, 285, 616
AluI	AGCT	6 cut(s)	78, 114, 126, 182, 285, 616
Alw21I	GWGCWC	1 cut(s)	501
Alw26I	GTCTC	1 cut(s)	320
AlwI	GGATC	2 cut(s)	284, 421
AlwNI	CAGNNNCTG	1 cut(s)	490
ApeKI	GCWGC	4 cut(s)	75, 114, 138, 147
ApoI	RAATTY	1 cut(s)	248
ArsI	GACNNNNNNTTYG	4 cut(s)	240, 272, 413, 445
AseI	ATTAAT	1 cut(s)	558
AsiGI	ACCGGT	1 cut(s)	694
Asp700I	GAANNNNTTC	1 cut(s)	278
AspLEI	GCGC	1 cut(s)	32
AspS9I	GGNCC	2 cut(s)	6, 41
AsuHPI	GGTGA	3 cut(s)	62, 78, 472
AvaII	GGWCC	2 cut(s)	6, 41
AxyI	CCTNAGG	1 cut(s)	63
Bbv12I	GWGCWC	1 cut(s)	501
BbvI	GCAGC	4 cut(s)	87, 101, 125, 134
BccI	CCATC	1 cut(s)	52
BceAI	ACGGC	3 cut(s)	43, 173, 227
BciT130I	CCWGG	1 cut(s)	90
BcoDI	GTCTC	1 cut(s)	320
BfmI	CTRYAG	2 cut(s)	183, 672
BfrI	CTTAAG	2 cut(s)	154, 644
BglII	AGATCT	1 cut(s)	520
BisI	GCNGC	5 cut(s)	76, 115, 139, 148, 207
BlsI	GCNGC	5 cut(s)	77, 116, 140, 149, 208
Bme1390I	CCNGG	1 cut(s)	90
Bme18I	GGWCC	2 cut(s)	6, 41
BmgT120I	GGNCC	2 cut(s)	6, 41
BmiI	GGNNCC	2 cut(s)	7, 661
BmrFI	CCNGG	1 cut(s)	90
BmsI	GCATC	2 cut(s)	89, 159
BsaBI	GATNNNNATC	1 cut(s)	412
BsaJI	CCNNGG	2 cut(s)	118, 196
BsaWI	WCCGGW	1 cut(s)	694
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse118I	RCCGGY	1 cut(s)	694
Bse21I	CCTNAGG	1 cut(s)	63
Bse8I	GATNNNNATC	1 cut(s)	412
BseBI	CCWGG	1 cut(s)	90
BseDI	CCNNGG	2 cut(s)	118, 196
BseGI	GGATG	2 cut(s)	104, 171
BseJI	GATNNNNATC	1 cut(s)	412
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseXI	GCAGC	4 cut(s)	87, 101, 125, 134
BsgI	GTGCAG	1 cut(s)	719
Bsh1236I	CGCG	1 cut(s)	32
BshTI	ACCGGT	1 cut(s)	694
BsiHKAI	GWGCWC	1 cut(s)	501
BsiSI	CCGG	1 cut(s)	695
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	320
Bsp1286I	GDGCHC	1 cut(s)	501
Bsp143I	GATC	7 cut(s)	162, 289, 319, 400, 413, 520, 640
BspACI	CCGC	4 cut(s)	59, 73, 141, 207
BspFNI	CGCG	1 cut(s)	32
BspLI	GGNNCC	2 cut(s)	7, 661
BspPI	GGATC	2 cut(s)	284, 421
BspTI	CTTAAG	2 cut(s)	154, 644
BsrBI	CCGCTC	1 cut(s)	209
BsrFI	RCCGGY	1 cut(s)	694
BssAI	RCCGGY	1 cut(s)	694
BssECI	CCNNGG	2 cut(s)	118, 196
BssMI	GATC	7 cut(s)	162, 289, 319, 400, 413, 520, 640
Bst2UI	CCWGG	1 cut(s)	90
Bst4CI	ACNGT	2 cut(s)	314, 460
BstAFI	CTTAAG	2 cut(s)	154, 644
BstDEI	CTNAG	3 cut(s)	63, 575, 720
BstF5I	GGATG	2 cut(s)	104, 171
BstFNI	CGCG	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	7 cut(s)	165, 292, 322, 403, 416, 523, 643
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	7 cut(s)	162, 289, 319, 400, 413, 520, 640
BstMWI	GCNNNNNNNGC	6 cut(s)	114, 123, 144, 147, 156, 165
BstNI	CCWGG	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	88
BstSFI	CTRYAG	2 cut(s)	183, 672
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	4 cut(s)	87, 101, 125, 134
BstX2I	RGATCY	2 cut(s)	413, 520
BstYI	RGATCY	2 cut(s)	413, 520
Bsu36I	CCTNAGG	1 cut(s)	63
BtsCI	GGATG	2 cut(s)	104, 171
BtsI	GCAGTG	1 cut(s)	707
BtsIMutI	CAGTG	1 cut(s)	707
CaiI	CAGNNNCTG	1 cut(s)	490
CfoI	GCGC	1 cut(s)	32
Cfr10I	RCCGGY	1 cut(s)	694
Cfr13I	GGNCC	2 cut(s)	6, 41
CseI	GACGC	1 cut(s)	272
Csp6I	GTAC	1 cut(s)	34
CspAI	ACCGGT	1 cut(s)	694
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	3 cut(s)	63, 575, 720
DpnI	GATC	7 cut(s)	164, 291, 321, 402, 415, 522, 642
DpnII	GATC	7 cut(s)	162, 289, 319, 400, 413, 520, 640
Eco47I	GGWCC	2 cut(s)	6, 41
Eco57I	CTGAAG	1 cut(s)	94
Eco81I	CCTNAGG	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	88
FaiI	YATR	5 cut(s)	19, 81, 179, 447, 602
FblI	GTMKAC	2 cut(s)	130, 363
Fnu4HI	GCNGC	5 cut(s)	76, 115, 139, 148, 207
FokI	GGATG	2 cut(s)	111, 158
Fsp4HI	GCNGC	5 cut(s)	76, 115, 139, 148, 207
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	5 cut(s)	76, 115, 139, 148, 207
HapII	CCGG	1 cut(s)	695
HgaI	GACGC	1 cut(s)	272
HhaI	GCGC	1 cut(s)	32
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HindIII	AAGCTT	1 cut(s)	614
HinfI	GANTC	8 cut(s)	93, 201, 279, 354, 360, 408, 487, 649
HpaII	CCGG	1 cut(s)	695
HphI	GGTGA	3 cut(s)	62, 78, 472
Hpy166II	GTNNAC	2 cut(s)	131, 364
Hpy188I	TCNGA	8 cut(s)	98, 122, 200, 273, 359, 405, 413, 555
Hpy188III	TCNNGA	1 cut(s)	317
Hpy8I	GTNNAC	2 cut(s)	131, 364
Hpy99I	CGWCG	5 cut(s)	260, 266, 433, 460, 509
HpyAV	CCTTC	1 cut(s)	473
HpyCH4III	ACNGT	2 cut(s)	314, 460
HpyCH4IV	ACGT	3 cut(s)	133, 255, 423
HpyCH4V	TGCA	3 cut(s)	150, 168, 700
HpyF10VI	GCNNNNNNNGC	6 cut(s)	114, 123, 144, 147, 156, 165
HpyF3I	CTNAG	3 cut(s)	63, 575, 720
HpySE526I	ACGT	3 cut(s)	133, 255, 423
HspAI	GCGC	1 cut(s)	30
Kzo9I	GATC	7 cut(s)	162, 289, 319, 400, 413, 520, 640
LmnI	GCTCC	1 cut(s)	509
LpnPI	CCDG	8 cut(s)	75, 102, 173, 205, 476, 528, 660, 708
Lsp1109I	GCAGC	4 cut(s)	87, 101, 125, 134
LweI	GCATC	2 cut(s)	89, 159
MaeII	ACGT	3 cut(s)	133, 255, 423
MaeIII	GTNAC	2 cut(s)	338, 704
MalI	GATC	7 cut(s)	164, 291, 321, 402, 415, 522, 642
MbiI	CCGCTC	1 cut(s)	209
MboI	GATC	7 cut(s)	162, 289, 319, 400, 413, 520, 640
MboII	GAAGA	1 cut(s)	220
MflI	RGATCY	2 cut(s)	413, 520
MhlI	GDGCHC	1 cut(s)	501
MluCI	AATT	6 cut(s)	48, 248, 325, 474, 566, 667
MlyI	GAGTC	3 cut(s)	210, 363, 369
MmeI	TCCRAC	1 cut(s)	337
MnlI	CCTC	9 cut(s)	128, 185, 206, 227, 314, 564, 663, 671, 673
MroXI	GAANNNNTTC	1 cut(s)	278
MseI	TTAA	8 cut(s)	155, 467, 558, 588, 618, 630, 645, 684
MspA1I	CMGCKG	1 cut(s)	114
MspCI	CTTAAG	2 cut(s)	154, 644
MspI	CCGG	1 cut(s)	695
MspR9I	CCNGG	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	90
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	6 cut(s)	114, 123, 144, 147, 156, 165
NdeII	GATC	7 cut(s)	162, 289, 319, 400, 413, 520, 640
NlaIV	GGNNCC	2 cut(s)	7, 661
NmeAIII	GCCGAG	1 cut(s)	480
NmuCI	GTSAC	1 cut(s)	704
PdmI	GAANNNNTTC	1 cut(s)	278
PfeI	GAWTC	5 cut(s)	93, 279, 408, 487, 649
PinAI	ACCGGT	1 cut(s)	694
PkrI	GCNGC	5 cut(s)	77, 116, 140, 149, 208
PleI	GAGTC	3 cut(s)	209, 362, 368
PpsI	GAGTC	3 cut(s)	209, 362, 368
PshBI	ATTAAT	1 cut(s)	558
PsiI	TTATAA	1 cut(s)	602
Psp1406I	AACGTT	1 cut(s)	423
Psp6I	CCWGG	1 cut(s)	88
PspGI	CCWGG	1 cut(s)	88
PspN4I	GGNNCC	2 cut(s)	7, 661
PspPI	GGNCC	2 cut(s)	6, 41
PstNI	CAGNNNCTG	1 cut(s)	490
PsuI	RGATCY	2 cut(s)	413, 520
PvuII	CAGCTG	1 cut(s)	114
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SaqAI	TTAA	8 cut(s)	155, 467, 558, 588, 618, 630, 645, 684
SatI	GCNGC	5 cut(s)	76, 115, 139, 148, 207
Sau3AI	GATC	7 cut(s)	162, 289, 319, 400, 413, 520, 640
Sau96I	GGNCC	2 cut(s)	6, 41
SchI	GAGTC	3 cut(s)	210, 363, 369
ScrFI	CCNGG	1 cut(s)	90
SduI	GDGCHC	1 cut(s)	501
SfaNI	GCATC	2 cut(s)	89, 159
SfcI	CTRYAG	2 cut(s)	183, 672
SinI	GGWCC	2 cut(s)	6, 41
SmlI	CTYRAG	2 cut(s)	154, 644
SmoI	CTYRAG	2 cut(s)	154, 644
Sse9I	AATT	6 cut(s)	48, 248, 325, 474, 566, 667
SsiI	CCGC	4 cut(s)	59, 73, 141, 207
StyD4I	CCNGG	1 cut(s)	88
TaaI	ACNGT	2 cut(s)	314, 460
TaiI	ACGT	3 cut(s)	136, 258, 426
TaqI	TCGA	2 cut(s)	288, 318
TasI	AATT	6 cut(s)	48, 248, 325, 474, 566, 667
TauI	GCSGC	1 cut(s)	209
TfiI	GAWTC	5 cut(s)	93, 279, 408, 487, 649
Tru1I	TTAA	8 cut(s)	155, 467, 558, 588, 618, 630, 645, 684
Tru9I	TTAA	8 cut(s)	155, 467, 558, 588, 618, 630, 645, 684
TscAI	CASTG	1 cut(s)	707
TseFI	GTSAC	1 cut(s)	704
TseI	GCWGC	4 cut(s)	75, 114, 138, 147
Tsp45I	GTSAC	1 cut(s)	704
TspGWI	ACGGA	5 cut(s)	54, 221, 326, 411, 522
TspRI	CASTG	1 cut(s)	707
Vha464I	CTTAAG	2 cut(s)	154, 644
VpaK11BI	GGWCC	2 cut(s)	6, 41
VspI	ATTAAT	1 cut(s)	558
XapI	RAATTY	1 cut(s)	248
XmiI	GTMKAC	2 cut(s)	130, 363
XmnI	GAANNNNTTC	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.