Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001177

Physical Location & Seq

Genomic Coordinates Reverse (-)

13646316 .. 13648254

Gene Structure 1939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g20140.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGTCTGAGAAACAAGCCCACTTGAATGGAGCCTATTACGGCCCATCAATCCCCCCGACGAAACACTACAACCGCCCCGGCCGCGGCGGAGGTCCTCTCGGCTGCTGCTGCAGCTGCCTCTTCGGTCTCAACTTTAAGCTTATCTTCGCTGCAGTCGTCTTCATGGGATTAGCCTTCCTCGCCTTTTGGCTCATAGTCCGCCCCACCAGAGTCAAGTTCCACGTAACAGATGCCACGCTCACACAGTTCAACTTCTCCACCGATAACAACCTGCACTACAATCTCGCTCTCAAGCTCACCATCCGAAACCCCAACAAGAAGATCGGCGTCTACTATGATCGCATTGAAGCCCGTGCTCTTTACGAGGGCCAGAGGTTCAGTACGGTTACTCTGACCCCATTTTACCAAGGCTACAAAACCACAAACGTTTTGAACCCGGTGTTTCAGGGACAGCAATTGATTGTTGGATCTGACTTGCTTGAGGAGTTTAATGAACAGAAGAGTGCTGGGGTTTACGAGATTGAGATGAAGCTTTATCTGAGGATTCGGTTCAAGTTGGGTAGAATCAAGACCGGAAAGTTCAAGCCTAGAATTGAATGTGACTTGAAGGTTCCTTTGAAACAGAATGGGAATTCACTAGGTGCTTTTCAGACTGAGAAATGTTCAATTGATTATTTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

228

Amino Acids

25.83

Weight (kDa)

9.53

Isoelectric Point (pI)

30.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	98 - 195	1.6e-09	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35460 AT2G35980 AT3G11650 AT5G06320
fragaria_vesca	FvH4_6g20130 FvH4_6g20140
malus_domestica	MD12G1038600.v1.1 MD14G1037300.v1.1
prunus_persica	Prupe.6G357300_v2.0.a1 Prupe.7G097200_v2.0.a1
pyrus_communis	pycom14g03260
rosa_chinensis	RchiOBHm_Chr3g0475591 RchiOBHm_Chr3g0475631 RchiOBHm_Chr3g0475641 RchiOBHm_Chr3g0475651 RchiOBHm_Chr3g0475661
rosa_laevigata	RLG00000023825 RLG00000023826 RLG00000023827 RLG00000023828 RLG00000023830
rosa_multiflora	Rmu_co8195028.1_g000001 Rmu_sc0000539.1_g000033 Rmu_sc0000539.1_g000043 Rmu_sc0000539.1_g000048 Rmu_sc0000539.1_g000055
rosa_roxburghii	Rroxscaffold_6G00406030 Rroxscaffold_6G00406040 Rroxscaffold_6G00406070 Rroxscaffold_6G00406080 Rroxscaffold_6G00406100 Rroxscaffold_6G00406110
rosa_rugosa	Rorug03G0150500 Rorug03G0150500 Rorug03G0150600 Rorug03G0150700 Rorug03G0150800 Rorug03G0150800
rosa_samantha	Rh3AG200100 Rh3AG200200 Rh3AG200300 Rh3BG230500 Rh3BG230600 Rh3BG230700 Rh3CG224800 Rh3CG225000 Rh3CG225100 Rh3CG225200 Rh3CG225300 Rh3DG225600 Rh3DG225700 Rh3DG225800
rosa_wichuraiana	Rw3G018150 Rw3G018170 Rw3G018180 Rw3G018190 Rw3G018200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	279
AccI	GTMKAC	1 cut(s)	330
AccII	CGCG	1 cut(s)	84
AciI	CCGC	5 cut(s)	73, 82, 84, 87, 199
AclI	AACGTT	1 cut(s)	426
AclWI	GGATC	1 cut(s)	475
AcoI	YGGCCR	1 cut(s)	79
AcsI	RAATTY	1 cut(s)	631
AcyI	GRCGYC	1 cut(s)	327
AdeI	CACNNNGTG	1 cut(s)	641
AfaI	GTAC	1 cut(s)	382
AfiI	CCNNNNNNNGG	1 cut(s)	83
AluBI	AGCT	4 cut(s)	114, 139, 295, 532
AluI	AGCT	4 cut(s)	114, 139, 295, 532
Alw21I	GWGCWC	1 cut(s)	358
Alw26I	GTCTC	1 cut(s)	131
AlwI	GGATC	1 cut(s)	475
AoxI	GGCC	3 cut(s)	40, 79, 367
ApeKI	GCWGC	6 cut(s)	102, 105, 108, 111, 114, 149
ApoI	RAATTY	1 cut(s)	631
AspS9I	GGNCC	3 cut(s)	41, 92, 367
AsuC2I	CCSGG	2 cut(s)	78, 437
AsuHPI	GGTGA	1 cut(s)	289
AvaII	GGWCC	1 cut(s)	92
BbsI	GAAGAC	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	358
BbvI	GCAGC	6 cut(s)	89, 92, 95, 101, 123, 136
BccI	CCATC	2 cut(s)	52, 308
BceAI	ACGGC	1 cut(s)	55
BcnI	CCSGG	2 cut(s)	78, 437
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	2 cut(s)	588, 638
BfmI	CTRYAG	2 cut(s)	109, 150
BfuAI	ACCTGC	1 cut(s)	279
BisI	GCNGC	8 cut(s)	82, 85, 103, 106, 109, 112, 115, 150
BlsI	GCNGC	8 cut(s)	83, 86, 104, 107, 110, 113, 116, 151
Bme1390I	CCNGG	2 cut(s)	78, 437
Bme18I	GGWCC	1 cut(s)	92
BmgT120I	GGNCC	3 cut(s)	41, 92, 367
BmiI	GGNNCC	2 cut(s)	31, 612
BmrFI	CCNGG	2 cut(s)	78, 437
BmsI	GCATC	1 cut(s)	220
BpiI	GAAGAC	1 cut(s)	151
BplI	GAGNNNNNCTC	2 cut(s)	81, 113
BpuEI	CTTGAG	2 cut(s)	275, 500
BpuMI	CCSGG	2 cut(s)	78, 437
BsaAI	YACGTR	1 cut(s)	223
BsaHI	GRCGYC	1 cut(s)	327
BsaI	GGTCTC	1 cut(s)	131
BsaJI	CCNNGG	3 cut(s)	76, 82, 406
BsaWI	WCCGGW	1 cut(s)	572
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
BseDI	CCNNGG	3 cut(s)	76, 82, 406
BseGI	GGATG	1 cut(s)	300
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMII	CTCAG	2 cut(s)	530, 645
BseRI	GAGGAG	1 cut(s)	497
BseX3I	CGGCCG	1 cut(s)	79
BseXI	GCAGC	6 cut(s)	89, 92, 95, 101, 123, 136
BseYI	CCCAGC	1 cut(s)	506
BsgI	GTGCAG	1 cut(s)	257
Bsh1236I	CGCG	1 cut(s)	84
Bsh1285I	CGRYCG	1 cut(s)	82
BshFI	GGCC	3 cut(s)	42, 81, 369
BsiEI	CGRYCG	1 cut(s)	82
BsiHKAI	GWGCWC	1 cut(s)	358
BsiSI	CCGG	3 cut(s)	78, 437, 573
BslFI	GGGAC	1 cut(s)	462
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	462
BsnI	GGCC	3 cut(s)	42, 81, 369
Bso31I	GGTCTC	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp143I	GATC	3 cut(s)	321, 337, 467
BspACI	CCGC	5 cut(s)	73, 82, 84, 87, 199
BspANI	GGCC	3 cut(s)	42, 81, 369
BspCNI	CTCAG	2 cut(s)	531, 646
BspFNI	CGCG	1 cut(s)	84
BspLI	GGNNCC	2 cut(s)	31, 612
BspMAI	CTGCAG	2 cut(s)	113, 154
BspMI	ACCTGC	1 cut(s)	279
BspPI	GGATC	1 cut(s)	475
BspTNI	GGTCTC	1 cut(s)	131
BssECI	CCNNGG	3 cut(s)	76, 82, 406
BssMI	GATC	3 cut(s)	321, 337, 467
BssNI	GRCGYC	1 cut(s)	327
BssT1I	CCWWGG	1 cut(s)	406
Bst4CI	ACNGT	2 cut(s)	246, 385
Bst6I	CTCTTC	2 cut(s)	125, 494
BstACI	GRCGYC	1 cut(s)	327
BstBAI	YACGTR	1 cut(s)	223
BstDEI	CTNAG	3 cut(s)	6, 539, 654
BstDSI	CCRYGG	1 cut(s)	82
BstF5I	GGATG	1 cut(s)	300
BstFNI	CGCG	1 cut(s)	84
BstKTI	GATC	3 cut(s)	324, 340, 470
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	3 cut(s)	321, 337, 467
BstMCI	CGRYCG	1 cut(s)	82
BstMWI	GCNNNNNNNGC	5 cut(s)	81, 108, 111, 114, 179
BstSCI	CCNGG	2 cut(s)	76, 435
BstSFI	CTRYAG	2 cut(s)	109, 150
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	6 cut(s)	89, 92, 95, 101, 123, 136
BstV2I	GAAGAC	1 cut(s)	151
BstX2I	RGATCY	1 cut(s)	467
BstXI	CCANNNNNNTGG	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	467
BstZI	CGGCCG	1 cut(s)	79
BsuRI	GGCC	3 cut(s)	42, 81, 369
BtgI	CCRYGG	1 cut(s)	82
BtsCI	GGATG	1 cut(s)	300
BveI	ACCTGC	1 cut(s)	279
Cfr13I	GGNCC	3 cut(s)	41, 92, 367
Cfr42I	CCGCGG	1 cut(s)	85
CseI	GACGC	1 cut(s)	316
Csp6I	GTAC	1 cut(s)	381
CviAII	CATG	1 cut(s)	163
CviQI	GTAC	1 cut(s)	381
DdeI	CTNAG	3 cut(s)	6, 539, 654
DpnI	GATC	3 cut(s)	323, 339, 469
DpnII	GATC	3 cut(s)	321, 337, 467
DraIII	CACNNNGTG	1 cut(s)	641
EaeI	YGGCCR	1 cut(s)	79
EagI	CGGCCG	1 cut(s)	79
Eam1104I	CTCTTC	2 cut(s)	125, 494
EarI	CTCTTC	2 cut(s)	125, 494
EciI	GGCGGA	2 cut(s)	102, 188
EclXI	CGGCCG	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	406
Eco31I	GGTCTC	1 cut(s)	131
Eco47I	GGWCC	1 cut(s)	92
Eco52I	CGGCCG	1 cut(s)	79
EcoO109I	RGGNCCY	1 cut(s)	92
EcoRI	GAATTC	1 cut(s)	631
EcoT14I	CCWWGG	1 cut(s)	406
ErhI	CCWWGG	1 cut(s)	406
FaeI	CATG	1 cut(s)	166
FaiI	YATR	3 cut(s)	164, 194, 336
FalI	AAGNNNNNCTT	2 cut(s)	128, 160
FaqI	GGGAC	1 cut(s)	462
FatI	CATG	1 cut(s)	162
FblI	GTMKAC	1 cut(s)	330
Fnu4HI	GCNGC	8 cut(s)	82, 85, 103, 106, 109, 112, 115, 150
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	8 cut(s)	82, 85, 103, 106, 109, 112, 115, 150
FspBI	CTAG	2 cut(s)	588, 638
GluI	GCNGC	8 cut(s)	82, 85, 103, 106, 109, 112, 115, 150
GsaI	CCCAGC	1 cut(s)	510
HaeIII	GGCC	3 cut(s)	42, 81, 369
HapII	CCGG	3 cut(s)	78, 437, 573
HgaI	GACGC	1 cut(s)	316
Hin1I	GRCGYC	1 cut(s)	327
Hin1II	CATG	1 cut(s)	166
HindIII	AAGCTT	2 cut(s)	137, 530
HinfI	GANTC	3 cut(s)	210, 544, 564
HpaII	CCGG	3 cut(s)	78, 437, 573
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	2 cut(s)	331, 514
Hpy188I	TCNGA	6 cut(s)	7, 305, 393, 472, 540, 651
Hpy188III	TCNNGA	1 cut(s)	568
Hpy8I	GTNNAC	2 cut(s)	331, 514
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	2 cut(s)	184, 601
HpyCH4III	ACNGT	2 cut(s)	246, 385
HpyCH4IV	ACGT	2 cut(s)	222, 426
HpyCH4V	TGCA	3 cut(s)	111, 152, 274
HpyF10VI	GCNNNNNNNGC	5 cut(s)	81, 108, 111, 114, 179
HpyF3I	CTNAG	3 cut(s)	6, 539, 654
HpySE526I	ACGT	2 cut(s)	222, 426
Hsp92I	GRCGYC	1 cut(s)	327
Hsp92II	CATG	1 cut(s)	166
KspI	CCGCGG	1 cut(s)	85
Kzo9I	GATC	3 cut(s)	321, 337, 467
LmnI	GCTCC	1 cut(s)	29
LpnPI	CCDG	8 cut(s)	91, 220, 284, 383, 431, 450, 492, 586
Lsp1109I	GCAGC	6 cut(s)	89, 92, 95, 101, 123, 136
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	2 cut(s)	588, 638
MaeII	ACGT	2 cut(s)	222, 426
MaeIII	GTNAC	3 cut(s)	223, 385, 599
MalI	GATC	3 cut(s)	323, 339, 469
MboI	GATC	3 cut(s)	321, 337, 467
MboII	GAAGA	5 cut(s)	112, 136, 151, 331, 511
MfeI	CAATTG	2 cut(s)	455, 666
MflI	RGATCY	1 cut(s)	467
MhlI	GDGCHC	1 cut(s)	358
MluCI	AATT	5 cut(s)	455, 591, 631, 666, 679
MlyI	GAGTC	1 cut(s)	219
MmeI	TCCRAC	1 cut(s)	445
MnlI	CCTC	8 cut(s)	83, 105, 128, 188, 358, 366, 475, 534
MseI	TTAA	3 cut(s)	135, 489, 682
MslI	CAYNNNNRTG	1 cut(s)	24
MspA1I	CMGCKG	2 cut(s)	84, 114
MspI	CCGG	3 cut(s)	78, 437, 573
MspR9I	CCNGG	2 cut(s)	78, 437
MunI	CAATTG	2 cut(s)	455, 666
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	5 cut(s)	81, 108, 111, 114, 179
NciI	CCSGG	2 cut(s)	78, 437
NdeII	GATC	3 cut(s)	321, 337, 467
NlaIII	CATG	1 cut(s)	166
NlaIV	GGNNCC	2 cut(s)	31, 612
NmeAIII	GCCGAG	1 cut(s)	78
NmuCI	GTSAC	1 cut(s)	599
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PfeI	GAWTC	2 cut(s)	544, 564
PkrI	GCNGC	8 cut(s)	83, 86, 104, 107, 110, 113, 116, 151
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
Ppu21I	YACGTR	1 cut(s)	223
PpuMI	RGGWCCY	1 cut(s)	92
Psp1406I	AACGTT	1 cut(s)	426
Psp5II	RGGWCCY	1 cut(s)	92
PspFI	CCCAGC	1 cut(s)	506
PspN4I	GGNNCC	2 cut(s)	31, 612
PspPI	GGNCC	3 cut(s)	41, 92, 367
PspPPI	RGGWCCY	1 cut(s)	92
PstI	CTGCAG	2 cut(s)	113, 154
PsuI	RGATCY	1 cut(s)	467
PvuII	CAGCTG	1 cut(s)	114
RsaI	GTAC	1 cut(s)	382
RsaNI	GTAC	1 cut(s)	381
RseI	CAYNNNNRTG	1 cut(s)	24
SacII	CCGCGG	1 cut(s)	85
SaqAI	TTAA	3 cut(s)	135, 489, 682
SatI	GCNGC	8 cut(s)	82, 85, 103, 106, 109, 112, 115, 150
Sau3AI	GATC	3 cut(s)	321, 337, 467
Sau96I	GGNCC	3 cut(s)	41, 92, 367
SchI	GAGTC	1 cut(s)	219
ScrFI	CCNGG	2 cut(s)	78, 437
SduI	GDGCHC	1 cut(s)	358
SfaNI	GCATC	1 cut(s)	220
SfcI	CTRYAG	2 cut(s)	109, 150
Sfr303I	CCGCGG	1 cut(s)	85
SgrBI	CCGCGG	1 cut(s)	85
SinI	GGWCC	1 cut(s)	92
SmiMI	CAYNNNNRTG	1 cut(s)	24
SmlI	CTYRAG	2 cut(s)	290, 479
SmoI	CTYRAG	2 cut(s)	290, 479
Sse9I	AATT	5 cut(s)	455, 591, 631, 666, 679
SsiI	CCGC	5 cut(s)	73, 82, 84, 87, 199
SspMI	CTAG	2 cut(s)	588, 638
StyD4I	CCNGG	2 cut(s)	76, 435
StyI	CCWWGG	1 cut(s)	406
TaaI	ACNGT	2 cut(s)	246, 385
TaiI	ACGT	2 cut(s)	225, 429
TaqII	GACCGA	1 cut(s)	113
TasI	AATT	5 cut(s)	455, 591, 631, 666, 679
TauI	GCSGC	2 cut(s)	84, 87
TfiI	GAWTC	2 cut(s)	544, 564
Tru1I	TTAA	3 cut(s)	135, 489, 682
Tru9I	TTAA	3 cut(s)	135, 489, 682
TseFI	GTSAC	1 cut(s)	599
TseI	GCWGC	6 cut(s)	102, 105, 108, 111, 114, 149
Tsp45I	GTSAC	1 cut(s)	599
TspDTI	ATGAA	3 cut(s)	151, 507, 542
VpaK11BI	GGWCC	1 cut(s)	92
XapI	RAATTY	1 cut(s)	631
XmiI	GTMKAC	1 cut(s)	330
XspI	CTAG	2 cut(s)	588, 638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.