Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001177

Physical Location & Seq

Genomic Coordinates Forward (+)

14905788 .. 14906504

Gene Structure 717 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G35460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGCGAACGGATTAAACGGCGCCAGTTACGGTCCACCAATCAAGCCACCGGTGAAAACTTACTACAGTCATGGCCGACGCGGCTCCGACGTAGGTTGCGGTATCTGTGGTTGTTTCTCCAGCTGTCTCCTTTGTTGCGGAGGTTGTCTCGTAAACATCATCTGCAACATCCTCATCGGTGTACTCGTTTGCCTTGGAGTCGTTGCTTTAATCCTCTGGTTTATCCTCCGACCAAACGTCGTGAAATTCCAAGTTACGGAAGCTGATTTAACGCGATTTGAGTTCGATCCAAGAAGCCATAACCTTCATTACAATATCTCGTTGAACTTTTCGATACGTAATCCTAATCAACGTCTTGGGATACACTATGATCAGTTAGAGGTGAGAGGTTACTACGGTGATCAGCGTTTTTCTGCTGCGAATATGACGTCGTTTTATCAGGGACATAAGAACACGACGGTGGTTGGAACGGAGTTAAACGGACAGAAACTGGTTTTGCTCGGTGCCGGTGGACGGAGAGATTTTAGGGAGGATCGGAGGTCTGGGGTTTACAGGATCGACGTGAAGCTCAGATTTAAGTTAAGGTTTAAGTTTGGGTTTTTGAACTCATGGGCCGTTAGGCCCAAGATTAAGTGTCATCTCAAAGTCCCCTTGAGCACCTCTAGTTCAGATGAAAGATTTCAGTTTCATCCCACCAAGTGCCACGTTGACCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009615 GO:0010150 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0090693 GO:0098542 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

238

Amino Acids

26.82

Weight (kDa)

9.54

Isoelectric Point (pI)

43.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	110 - 212	7.1e-14	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35460 AT2G35980 AT3G11650 AT5G06320
fragaria_vesca	FvH4_6g20130 FvH4_6g20140
malus_domestica	MD12G1038600.v1.1 MD14G1037300.v1.1
prunus_persica	Prupe.6G357300_v2.0.a1 Prupe.7G097200_v2.0.a1
pyrus_communis	pycom14g03260
rosa_chinensis	RchiOBHm_Chr3g0475591 RchiOBHm_Chr3g0475631 RchiOBHm_Chr3g0475641 RchiOBHm_Chr3g0475651 RchiOBHm_Chr3g0475661
rosa_laevigata	RLG00000023825 RLG00000023826 RLG00000023827 RLG00000023828 RLG00000023830
rosa_multiflora	Rmu_co8195028.1_g000001 Rmu_sc0000539.1_g000033 Rmu_sc0000539.1_g000043 Rmu_sc0000539.1_g000048 Rmu_sc0000539.1_g000055
rosa_roxburghii	Rroxscaffold_6G00406030 Rroxscaffold_6G00406040 Rroxscaffold_6G00406070 Rroxscaffold_6G00406080 Rroxscaffold_6G00406100 Rroxscaffold_6G00406110
rosa_rugosa	Rorug03G0150500 Rorug03G0150500 Rorug03G0150600 Rorug03G0150700 Rorug03G0150800 Rorug03G0150800
rosa_samantha	Rh3AG200100 Rh3AG200200 Rh3AG200300 Rh3BG230500 Rh3BG230600 Rh3BG230700 Rh3CG224800 Rh3CG225000 Rh3CG225100 Rh3CG225200 Rh3CG225300 Rh3DG225600 Rh3DG225700 Rh3DG225800
rosa_wichuraiana	Rw3G018150 Rw3G018170 Rw3G018180 Rw3G018190 Rw3G018200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	431
AccB1I	GGYRCC	2 cut(s)	20, 503
AccII	CGCG	2 cut(s)	81, 274
AciI	CCGC	3 cut(s)	81, 99, 138
AclWI	GGATC	3 cut(s)	281, 540, 563
AcoI	YGGCCR	1 cut(s)	73
AcsI	RAATTY	1 cut(s)	245
AcyI	GRCGYC	2 cut(s)	21, 428
AdeI	CACNNNGTG	1 cut(s)	699
AfaI	GTAC	1 cut(s)	183
AfiI	CCNNNNNNNGG	2 cut(s)	256, 513
AgeI	ACCGGT	1 cut(s)	49
AgsI	TTSAA	2 cut(s)	325, 604
AhdI	GACNNNNNGTC	1 cut(s)	236
AjiI	CACGTC	1 cut(s)	562
AleI	CACNNNNGTG	1 cut(s)	458
AluBI	AGCT	3 cut(s)	123, 263, 568
AluI	AGCT	3 cut(s)	123, 263, 568
Alw21I	GWGCWC	1 cut(s)	659
Alw26I	GTCTC	2 cut(s)	131, 152
AlwI	GGATC	3 cut(s)	281, 540, 563
AlwNI	CAGNNNCTG	1 cut(s)	490
AoxI	GGCC	3 cut(s)	73, 612, 620
ApeKI	GCWGC	1 cut(s)	416
ApoI	RAATTY	1 cut(s)	245
ArsI	GACNNNNNNTTYG	2 cut(s)	413, 445
AsiGI	ACCGGT	1 cut(s)	49
Asp700I	GAANNNNTTC	1 cut(s)	678
AspLEI	GCGC	1 cut(s)	23
AspS9I	GGNCC	3 cut(s)	32, 612, 621
AsuHPI	GGTGA	3 cut(s)	64, 394, 410
AvaII	GGWCC	1 cut(s)	32
BanI	GGYRCC	2 cut(s)	20, 503
Bbv12I	GWGCWC	1 cut(s)	659
BbvI	GCAGC	1 cut(s)	403
BceAI	ACGGC	2 cut(s)	34, 599
BciVI	GTATCC	1 cut(s)	354
BclI	TGATCA	2 cut(s)	370, 400
BcoDI	GTCTC	2 cut(s)	131, 152
BfaI	CTAG	1 cut(s)	663
BfmI	CTRYAG	1 cut(s)	64
BfoI	RGCGCY	1 cut(s)	24
BfuI	GTATCC	1 cut(s)	354
BglI	GCCNNNNNGGC	1 cut(s)	81
BisI	GCNGC	2 cut(s)	82, 417
BlsI	GCNGC	2 cut(s)	83, 418
Bme18I	GGWCC	1 cut(s)	32
BmeRI	GACNNNNNGTC	1 cut(s)	236
BmgBI	CACGTC	1 cut(s)	562
BmgT120I	GGNCC	3 cut(s)	32, 612, 621
BmiI	GGNNCC	3 cut(s)	22, 85, 505
BplI	GAGNNNNNCTC	2 cut(s)	132, 164
BpmI	CTGGAG	1 cut(s)	103
BpuEI	CTTGAG	1 cut(s)	673
BsaAI	YACGTR	1 cut(s)	338
BsaHI	GRCGYC	2 cut(s)	21, 428
BsaJI	CCNNGG	1 cut(s)	193
BsaWI	WCCGGW	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	2 cut(s)	256, 513
Bse118I	RCCGGY	2 cut(s)	49, 506
Bse1I	ACTGG	2 cut(s)	24, 495
BseDI	CCNNGG	1 cut(s)	193
BseGI	GGATG	2 cut(s)	168, 688
BseLI	CCNNNNNNNGG	2 cut(s)	256, 513
BseMII	CTCAG	1 cut(s)	583
BseNI	ACTGG	2 cut(s)	24, 495
BseXI	GCAGC	1 cut(s)	403
Bsh1236I	CGCG	2 cut(s)	81, 274
BshFI	GGCC	3 cut(s)	75, 614, 622
BshNI	GGYRCC	2 cut(s)	20, 503
BshTI	ACCGGT	1 cut(s)	49
BsiHKAI	GWGCWC	1 cut(s)	659
BsiSI	CCGG	2 cut(s)	50, 507
BslFI	GGGAC	2 cut(s)	456, 632
BslI	CCNNNNNNNGG	2 cut(s)	256, 513
BsmAI	GTCTC	2 cut(s)	131, 152
BsmFI	GGGAC	2 cut(s)	456, 632
BsnI	GGCC	3 cut(s)	75, 614, 622
Bsp1286I	GDGCHC	1 cut(s)	659
Bsp143I	GATC	5 cut(s)	286, 370, 400, 532, 555
BspACI	CCGC	3 cut(s)	81, 99, 138
BspANI	GGCC	3 cut(s)	75, 614, 622
BspCNI	CTCAG	1 cut(s)	582
BspFNI	CGCG	2 cut(s)	81, 274
BspLI	GGNNCC	3 cut(s)	22, 85, 505
BspPI	GGATC	3 cut(s)	281, 540, 563
BspT107I	GGYRCC	2 cut(s)	20, 503
BsrFI	RCCGGY	2 cut(s)	49, 506
BsrI	ACTGG	2 cut(s)	24, 495
BssAI	RCCGGY	2 cut(s)	49, 506
BssECI	CCNNGG	1 cut(s)	193
BssMI	GATC	5 cut(s)	286, 370, 400, 532, 555
BssNI	GRCGYC	2 cut(s)	21, 428
BssT1I	CCWWGG	1 cut(s)	193
Bst4CI	ACNGT	4 cut(s)	32, 68, 398, 460
BstACI	GRCGYC	2 cut(s)	21, 428
BstBAI	YACGTR	1 cut(s)	338
BstDEI	CTNAG	1 cut(s)	569
BstF5I	GGATG	2 cut(s)	168, 688
BstFNI	CGCG	2 cut(s)	81, 274
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	1 cut(s)	23
BstKTI	GATC	5 cut(s)	289, 373, 403, 535, 558
BstMAI	GTCTC	2 cut(s)	131, 152
BstMBI	GATC	5 cut(s)	286, 370, 400, 532, 555
BstMWI	GCNNNNNNNGC	1 cut(s)	81
BstSFI	CTRYAG	1 cut(s)	64
BstSNI	TACGTA	1 cut(s)	338
BstUI	CGCG	2 cut(s)	81, 274
BstV1I	GCAGC	1 cut(s)	403
BsuI	GTATCC	1 cut(s)	354
BsuRI	GGCC	3 cut(s)	75, 614, 622
BtrI	CACGTC	1 cut(s)	562
BtsCI	GGATG	2 cut(s)	168, 688
CaiI	CAGNNNCTG	1 cut(s)	490
CfoI	GCGC	1 cut(s)	23
Cfr10I	RCCGGY	2 cut(s)	49, 506
Cfr13I	GGNCC	3 cut(s)	32, 612, 621
CseI	GACGC	1 cut(s)	87
Csp6I	GTAC	1 cut(s)	182
CspAI	ACCGGT	1 cut(s)	49
CviAII	CATG	2 cut(s)	71, 609
CviJI	RGCY	9 cut(s)	46, 75, 84, 123, 263, 297, 568, 614, 622
CviKI_1	RGCY	9 cut(s)	46, 75, 84, 123, 263, 297, 568, 614, 622
CviQI	GTAC	1 cut(s)	182
DdeI	CTNAG	1 cut(s)	569
DinI	GGCGCC	1 cut(s)	22
DpnI	GATC	5 cut(s)	288, 372, 402, 534, 557
DpnII	GATC	5 cut(s)	286, 370, 400, 532, 555
DraIII	CACNNNGTG	1 cut(s)	699
DriI	GACNNNNNGTC	1 cut(s)	236
EaeI	YGGCCR	1 cut(s)	73
Eam1105I	GACNNNNNGTC	1 cut(s)	236
Eco105I	TACGTA	1 cut(s)	338
Eco130I	CCWWGG	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	32
EcoT14I	CCWWGG	1 cut(s)	193
EgeI	GGCGCC	1 cut(s)	22
EheI	GGCGCC	1 cut(s)	22
ErhI	CCWWGG	1 cut(s)	193
FaeI	CATG	2 cut(s)	74, 612
FaiI	YATR	6 cut(s)	72, 300, 369, 425, 447, 610
FaqI	GGGAC	2 cut(s)	456, 632
FatI	CATG	2 cut(s)	70, 608
FbaI	TGATCA	2 cut(s)	370, 400
Fnu4HI	GCNGC	2 cut(s)	82, 417
FokI	GGATG	2 cut(s)	155, 675
Fsp4HI	GCNGC	2 cut(s)	82, 417
FspBI	CTAG	1 cut(s)	663
GlaI	GCGC	1 cut(s)	22
GluI	GCNGC	2 cut(s)	82, 417
GsuI	CTGGAG	1 cut(s)	103
HaeII	RGCGCY	1 cut(s)	24
HaeIII	GGCC	3 cut(s)	75, 614, 622
HapII	CCGG	2 cut(s)	50, 507
HgaI	GACGC	1 cut(s)	87
HhaI	GCGC	1 cut(s)	23
Hin1I	GRCGYC	2 cut(s)	21, 428
Hin1II	CATG	2 cut(s)	74, 612
Hin6I	GCGC	1 cut(s)	21
HinP1I	GCGC	1 cut(s)	21
HincII	GTYRAC	1 cut(s)	709
HindII	GTYRAC	1 cut(s)	709
HinfI	GANTC	1 cut(s)	198
HpaII	CCGG	2 cut(s)	50, 507
HphI	GGTGA	3 cut(s)	64, 394, 410
Hpy166II	GTNNAC	6 cut(s)	35, 154, 182, 512, 550, 709
Hpy188I	TCNGA	6 cut(s)	88, 230, 537, 572, 670, 716
Hpy188III	TCNNGA	1 cut(s)	241
Hpy8I	GTNNAC	6 cut(s)	35, 154, 182, 512, 550, 709
Hpy99I	CGWCG	6 cut(s)	81, 92, 242, 433, 460, 563
HpyAV	CCTTC	1 cut(s)	314
HpyCH4III	ACNGT	4 cut(s)	32, 68, 398, 460
HpyCH4IV	ACGT	7 cut(s)	90, 237, 337, 352, 428, 561, 705
HpyCH4V	TGCA	1 cut(s)	165
HpyF10VI	GCNNNNNNNGC	1 cut(s)	81
HpyF3I	CTNAG	1 cut(s)	569
HpySE526I	ACGT	7 cut(s)	90, 237, 337, 352, 428, 561, 705
Hsp92I	GRCGYC	2 cut(s)	21, 428
Hsp92II	CATG	2 cut(s)	74, 612
HspAI	GCGC	1 cut(s)	21
KasI	GGCGCC	1 cut(s)	20
Ksp22I	TGATCA	2 cut(s)	370, 400
Kzo9I	GATC	5 cut(s)	286, 370, 400, 532, 555
LmnI	GCTCC	1 cut(s)	89
LpnPI	CCDG	9 cut(s)	37, 63, 133, 202, 425, 476, 520, 528, 538
Lsp1109I	GCAGC	1 cut(s)	403
MaeI	CTAG	1 cut(s)	663
MaeII	ACGT	7 cut(s)	90, 237, 337, 352, 428, 561, 705
MaeIII	GTNAC	3 cut(s)	26, 253, 389
MalI	GATC	5 cut(s)	288, 372, 402, 534, 557
MboI	GATC	5 cut(s)	286, 370, 400, 532, 555
MhlI	GDGCHC	1 cut(s)	659
MluCI	AATT	1 cut(s)	245
Mly113I	GGCGCC	1 cut(s)	21
MlyI	GAGTC	1 cut(s)	207
MmeI	TCCRAC	3 cut(s)	111, 253, 445
MnlI	CCTC	9 cut(s)	134, 182, 224, 236, 373, 380, 523, 531, 670
MroXI	GAANNNNTTC	1 cut(s)	678
MseI	TTAA	8 cut(s)	14, 209, 269, 476, 576, 581, 588, 630
MslI	CAYNNNNRTG	1 cut(s)	458
MspA1I	CMGCKG	1 cut(s)	123
MspI	CCGG	2 cut(s)	50, 507
MvnI	CGCG	2 cut(s)	81, 274
MwoI	GCNNNNNNNGC	1 cut(s)	81
NarI	GGCGCC	1 cut(s)	21
NdeII	GATC	5 cut(s)	286, 370, 400, 532, 555
NlaIII	CATG	2 cut(s)	74, 612
NlaIV	GGNNCC	3 cut(s)	22, 85, 505
OliI	CACNNNNGTG	1 cut(s)	458
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PdmI	GAANNNNTTC	1 cut(s)	678
PinAI	ACCGGT	1 cut(s)	49
PkrI	GCNGC	2 cut(s)	83, 418
PleI	GAGTC	1 cut(s)	206
PluTI	GGCGCC	1 cut(s)	24
PpsI	GAGTC	1 cut(s)	206
Ppu21I	YACGTR	1 cut(s)	338
PspN4I	GGNNCC	3 cut(s)	22, 85, 505
PspPI	GGNCC	3 cut(s)	32, 612, 621
PstNI	CAGNNNCTG	1 cut(s)	490
PvuII	CAGCTG	1 cut(s)	123
RsaI	GTAC	1 cut(s)	183
RsaNI	GTAC	1 cut(s)	182
RseI	CAYNNNNRTG	1 cut(s)	458
SaqAI	TTAA	8 cut(s)	14, 209, 269, 476, 576, 581, 588, 630
SatI	GCNGC	2 cut(s)	82, 417
Sau3AI	GATC	5 cut(s)	286, 370, 400, 532, 555
Sau96I	GGNCC	3 cut(s)	32, 612, 621
SchI	GAGTC	1 cut(s)	207
SduI	GDGCHC	1 cut(s)	659
SfcI	CTRYAG	1 cut(s)	64
SfoI	GGCGCC	1 cut(s)	22
SgrAI	CRCCGGYG	1 cut(s)	49
SinI	GGWCC	1 cut(s)	32
SmiMI	CAYNNNNRTG	1 cut(s)	458
SmlI	CTYRAG	1 cut(s)	652
SmoI	CTYRAG	1 cut(s)	652
SnaBI	TACGTA	1 cut(s)	338
Sse9I	AATT	1 cut(s)	245
SsiI	CCGC	3 cut(s)	81, 99, 138
SspDI	GGCGCC	1 cut(s)	20
SspMI	CTAG	1 cut(s)	663
StyI	CCWWGG	1 cut(s)	193
TaaI	ACNGT	4 cut(s)	32, 68, 398, 460
TaiI	ACGT	7 cut(s)	93, 240, 340, 355, 431, 564, 708
TaqI	TCGA	3 cut(s)	285, 332, 558
TasI	AATT	1 cut(s)	245
TatI	WGTACW	1 cut(s)	181
TauI	GCSGC	1 cut(s)	84
Tru1I	TTAA	8 cut(s)	14, 209, 269, 476, 576, 581, 588, 630
Tru9I	TTAA	8 cut(s)	14, 209, 269, 476, 576, 581, 588, 630
TseI	GCWGC	1 cut(s)	416
TspDTI	ATGAA	3 cut(s)	296, 677, 687
TspGWI	ACGGA	5 cut(s)	24, 272, 485, 495, 529
VpaK11BI	GGWCC	1 cut(s)	32
XapI	RAATTY	1 cut(s)	245
XmnI	GAANNNNTTC	1 cut(s)	678
XspI	CTAG	1 cut(s)	663
ZraI	GACGTC	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.