Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001177

Physical Location & Seq

Genomic Coordinates Reverse (-)

13635156 .. 13636346

Gene Structure 1191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g20130.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGCAGAGAGAGAAGAAGCCCACTTAAACGGGGCCTACTACGGCCCCTCAGTCCCGCCCAGCAAATCCTACCACCGCCCCAGCCGCGGCGGTGGCCCCCTCGGCTGCTGCTGCAGCTGCGTCTTCGGCCTCGTTTTCAAGCTCATCTTCGCTGCTGTTGTCTTCATGGGACTAGCCTTCCTCGTCTTCTGGCTCATAGTCCGCCCCACCAAAGTCAAGTTCCACGTCACCGACGCCACGCTCACCCAATTCAACTTCTCCACCGATAGCAACCTGCATTACAACCTCGCCCTCAACCTCACCATCAGAAACCCTAACAAGAAGATCGGCGTTTACTATGATCGCATTGAAGCCAGAGCTCTGTACGAGGGCCAGAGGTTCAGTACGGTTACTCTGACCCCATTTTACCAAGGCCACAAGACCACAAACATATTGAACCCTGTGTTTCAGGGACAGCAATTGATTGTTGGATCTGACTTGCTTGAGGAGTTTAATGAACAGAAGACTGCTGGGGTTTACAAGATTGAGATGAAGCTTTATCTGAGGATTCGGTTCAGGTTGGGTAAGATCAAAACCGGGAAGTTCAAGCCTAGAATTGAATGTGACTTGAAGGTTCCTGTGAGTCAGAATGGGACTTTAGTTGGAACTTTTCAGACTGAGAAGTGTTCAGTTGATTTCTTCAACTATCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

231

Amino Acids

26.15

Weight (kDa)

9.49

Isoelectric Point (pI)

33.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	100 - 200	3.2e-10	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35460 AT2G35980 AT3G11650 AT5G06320
fragaria_vesca	FvH4_6g20130 FvH4_6g20140
malus_domestica	MD12G1038600.v1.1 MD14G1037300.v1.1
prunus_persica	Prupe.6G357300_v2.0.a1 Prupe.7G097200_v2.0.a1
pyrus_communis	pycom14g03260
rosa_chinensis	RchiOBHm_Chr3g0475591 RchiOBHm_Chr3g0475631 RchiOBHm_Chr3g0475641 RchiOBHm_Chr3g0475651 RchiOBHm_Chr3g0475661
rosa_laevigata	RLG00000023825 RLG00000023826 RLG00000023827 RLG00000023828 RLG00000023830
rosa_multiflora	Rmu_co8195028.1_g000001 Rmu_sc0000539.1_g000033 Rmu_sc0000539.1_g000043 Rmu_sc0000539.1_g000048 Rmu_sc0000539.1_g000055
rosa_roxburghii	Rroxscaffold_6G00406030 Rroxscaffold_6G00406040 Rroxscaffold_6G00406070 Rroxscaffold_6G00406080 Rroxscaffold_6G00406100 Rroxscaffold_6G00406110
rosa_rugosa	Rorug03G0150500 Rorug03G0150500 Rorug03G0150600 Rorug03G0150700 Rorug03G0150800 Rorug03G0150800
rosa_samantha	Rh3AG200100 Rh3AG200200 Rh3AG200300 Rh3BG230500 Rh3BG230600 Rh3BG230700 Rh3CG224800 Rh3CG225000 Rh3CG225100 Rh3CG225200 Rh3CG225300 Rh3DG225600 Rh3DG225700 Rh3DG225800
rosa_wichuraiana	Rw3G018150 Rw3G018170 Rw3G018180 Rw3G018190 Rw3G018200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	282
AccII	CGCG	1 cut(s)	87
AciI	CCGC	6 cut(s)	56, 76, 85, 87, 90, 202
AclWI	GGATC	1 cut(s)	478
AcyI	GRCGYC	1 cut(s)	234
AfaI	GTAC	2 cut(s)	365, 385
AfiI	CCNNNNNNNGG	1 cut(s)	86
AgsI	TTSAA	8 cut(s)	139, 253, 350, 436, 586, 599, 610, 682
AjiI	CACGTC	1 cut(s)	226
AjuI	GAANNNNNNNTTGG	2 cut(s)	203, 235
AluBI	AGCT	4 cut(s)	117, 142, 359, 535
AluI	AGCT	4 cut(s)	117, 142, 359, 535
Alw21I	GWGCWC	1 cut(s)	361
AlwI	GGATC	1 cut(s)	478
AoxI	GGCC	6 cut(s)	33, 43, 94, 127, 370, 412
ApeKI	GCWGC	6 cut(s)	105, 108, 111, 114, 117, 152
AspS9I	GGNCC	4 cut(s)	33, 44, 95, 370
AsuC2I	CCSGG	1 cut(s)	577
AsuHPI	GGTGA	3 cut(s)	220, 235, 292
BanII	GRGCYC	1 cut(s)	361
BbsI	GAAGAC	4 cut(s)	115, 154, 178, 509
Bbv12I	GWGCWC	1 cut(s)	361
BbvI	GCAGC	6 cut(s)	92, 95, 98, 104, 126, 139
BccI	CCATC	1 cut(s)	311
BceAI	ACGGC	1 cut(s)	58
BcnI	CCSGG	1 cut(s)	577
BfaI	CTAG	2 cut(s)	173, 591
BfmI	CTRYAG	1 cut(s)	112
BfuAI	ACCTGC	1 cut(s)	282
BglI	GCCNNNNNGGC	1 cut(s)	102
BisI	GCNGC	8 cut(s)	85, 88, 106, 109, 112, 115, 118, 153
BlsI	GCNGC	8 cut(s)	86, 89, 107, 110, 113, 116, 119, 154
Bme1390I	CCNGG	1 cut(s)	577
BmgBI	CACGTC	1 cut(s)	226
BmgT120I	GGNCC	4 cut(s)	33, 44, 95, 370
BmiI	GGNNCC	4 cut(s)	34, 46, 97, 615
BmrFI	CCNGG	1 cut(s)	577
BpiI	GAAGAC	4 cut(s)	115, 154, 178, 509
BpuEI	CTTGAG	1 cut(s)	503
BpuMI	CCSGG	1 cut(s)	577
Bsa29I	ATCGAT	1 cut(s)	688
BsaHI	GRCGYC	1 cut(s)	234
BsaJI	CCNNGG	3 cut(s)	85, 100, 409
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
BseCI	ATCGAT	1 cut(s)	688
BseDI	CCNNGG	3 cut(s)	85, 100, 409
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseMII	CTCAG	3 cut(s)	63, 533, 648
BseRI	GAGGAG	1 cut(s)	500
BseXI	GCAGC	6 cut(s)	92, 95, 98, 104, 126, 139
BseYI	CCCAGC	3 cut(s)	59, 80, 509
Bsh1236I	CGCG	1 cut(s)	87
BshFI	GGCC	6 cut(s)	35, 45, 96, 129, 372, 414
BshVI	ATCGAT	1 cut(s)	688
BsiHKAI	GWGCWC	1 cut(s)	361
BsiSI	CCGG	1 cut(s)	576
BslFI	GGGAC	4 cut(s)	38, 183, 465, 646
BslI	CCNNNNNNNGG	1 cut(s)	86
BsmFI	GGGAC	4 cut(s)	38, 183, 465, 646
BsnI	GGCC	6 cut(s)	35, 45, 96, 129, 372, 414
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp143I	GATC	4 cut(s)	324, 340, 470, 567
BspACI	CCGC	6 cut(s)	56, 76, 85, 87, 90, 202
BspANI	GGCC	6 cut(s)	35, 45, 96, 129, 372, 414
BspCNI	CTCAG	3 cut(s)	62, 534, 649
BspDI	ATCGAT	1 cut(s)	688
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	4 cut(s)	34, 46, 97, 615
BspMAI	CTGCAG	1 cut(s)	116
BspMI	ACCTGC	1 cut(s)	282
BspPI	GGATC	1 cut(s)	478
BssECI	CCNNGG	3 cut(s)	85, 100, 409
BssMI	GATC	4 cut(s)	324, 340, 470, 567
BssNI	GRCGYC	1 cut(s)	234
BssT1I	CCWWGG	1 cut(s)	409
Bst4CI	ACNGT	1 cut(s)	388
BstACI	GRCGYC	1 cut(s)	234
BstDEI	CTNAG	3 cut(s)	49, 542, 657
BstDSI	CCRYGG	1 cut(s)	85
BstFNI	CGCG	1 cut(s)	87
BstKTI	GATC	4 cut(s)	327, 343, 473, 570
BstMBI	GATC	4 cut(s)	324, 340, 470, 567
BstMWI	GCNNNNNNNGC	7 cut(s)	84, 93, 102, 111, 114, 117, 126
BstSCI	CCNGG	1 cut(s)	575
BstSFI	CTRYAG	1 cut(s)	112
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	6 cut(s)	92, 95, 98, 104, 126, 139
BstV2I	GAAGAC	4 cut(s)	115, 154, 178, 509
BstX2I	RGATCY	1 cut(s)	470
BstYI	RGATCY	1 cut(s)	470
Bsu15I	ATCGAT	1 cut(s)	688
BsuRI	GGCC	6 cut(s)	35, 45, 96, 129, 372, 414
BsuTUI	ATCGAT	1 cut(s)	688
BtgI	CCRYGG	1 cut(s)	85
BtrI	CACGTC	1 cut(s)	226
BveI	ACCTGC	1 cut(s)	282
Cfr13I	GGNCC	4 cut(s)	33, 44, 95, 370
Cfr42I	CCGCGG	1 cut(s)	88
ClaI	ATCGAT	1 cut(s)	688
CseI	GACGC	2 cut(s)	109, 242
Csp6I	GTAC	2 cut(s)	364, 384
CviAII	CATG	1 cut(s)	166
CviQI	GTAC	2 cut(s)	364, 384
DdeI	CTNAG	3 cut(s)	49, 542, 657
DpnI	GATC	4 cut(s)	326, 342, 472, 569
DpnII	GATC	4 cut(s)	324, 340, 470, 567
EciI	GGCGGA	1 cut(s)	191
Ecl136II	GAGCTC	1 cut(s)	359
Eco130I	CCWWGG	1 cut(s)	409
Eco24I	GRGCYC	1 cut(s)	361
Eco53kI	GAGCTC	1 cut(s)	359
EcoICRI	GAGCTC	1 cut(s)	359
EcoO109I	RGGNCCY	1 cut(s)	33
EcoT14I	CCWWGG	1 cut(s)	409
EcoT38I	GRGCYC	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	409
FaeI	CATG	1 cut(s)	169
FaiI	YATR	4 cut(s)	167, 197, 339, 431
FalI	AAGNNNNNCTT	2 cut(s)	131, 163
FaqI	GGGAC	4 cut(s)	38, 183, 465, 646
FatI	CATG	1 cut(s)	165
FauI	CCCGC	1 cut(s)	63
Fnu4HI	GCNGC	8 cut(s)	85, 88, 106, 109, 112, 115, 118, 153
FriOI	GRGCYC	1 cut(s)	361
Fsp4HI	GCNGC	8 cut(s)	85, 88, 106, 109, 112, 115, 118, 153
FspBI	CTAG	2 cut(s)	173, 591
GluI	GCNGC	8 cut(s)	85, 88, 106, 109, 112, 115, 118, 153
GsaI	CCCAGC	3 cut(s)	63, 84, 513
HaeIII	GGCC	6 cut(s)	35, 45, 96, 129, 372, 414
HapII	CCGG	1 cut(s)	576
HgaI	GACGC	2 cut(s)	109, 242
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	1 cut(s)	169
HindIII	AAGCTT	1 cut(s)	533
HinfI	GANTC	2 cut(s)	547, 622
HpaII	CCGG	1 cut(s)	576
HphI	GGTGA	3 cut(s)	220, 235, 292
Hpy166II	GTNNAC	2 cut(s)	334, 517
Hpy188I	TCNGA	6 cut(s)	308, 396, 475, 543, 627, 654
Hpy8I	GTNNAC	2 cut(s)	334, 517
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	2 cut(s)	187, 604
HpyCH4III	ACNGT	1 cut(s)	388
HpyCH4IV	ACGT	1 cut(s)	225
HpyCH4V	TGCA	2 cut(s)	114, 277
HpyF10VI	GCNNNNNNNGC	7 cut(s)	84, 93, 102, 111, 114, 117, 126
HpyF3I	CTNAG	3 cut(s)	49, 542, 657
HpySE526I	ACGT	1 cut(s)	225
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	1 cut(s)	169
KspI	CCGCGG	1 cut(s)	88
Kzo9I	GATC	4 cut(s)	324, 340, 470, 567
Lsp1109I	GCAGC	6 cut(s)	92, 95, 98, 104, 126, 139
MaeI	CTAG	2 cut(s)	173, 591
MaeII	ACGT	1 cut(s)	225
MaeIII	GTNAC	3 cut(s)	226, 388, 602
MalI	GATC	4 cut(s)	326, 342, 472, 569
MboI	GATC	4 cut(s)	324, 340, 470, 567
MboII	GAAGA	8 cut(s)	26, 115, 139, 154, 178, 334, 514, 670
MfeI	CAATTG	1 cut(s)	458
MflI	RGATCY	1 cut(s)	470
MhlI	GDGCHC	1 cut(s)	361
MluCI	AATT	3 cut(s)	248, 458, 594
MlyI	GAGTC	1 cut(s)	631
MmeI	TCCRAC	2 cut(s)	448, 622
MseI	TTAA	2 cut(s)	26, 492
MspA1I	CMGCKG	2 cut(s)	87, 117
MspI	CCGG	1 cut(s)	576
MspR9I	CCNGG	1 cut(s)	577
MunI	CAATTG	1 cut(s)	458
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	7 cut(s)	84, 93, 102, 111, 114, 117, 126
NciI	CCSGG	1 cut(s)	577
NdeII	GATC	4 cut(s)	324, 340, 470, 567
NlaIII	CATG	1 cut(s)	169
NlaIV	GGNNCC	4 cut(s)	34, 46, 97, 615
NmeAIII	GCCGAG	1 cut(s)	81
NmuCI	GTSAC	2 cut(s)	226, 602
PfeI	GAWTC	1 cut(s)	547
PkrI	GCNGC	8 cut(s)	86, 89, 107, 110, 113, 116, 119, 154
PleI	GAGTC	1 cut(s)	630
PpsI	GAGTC	1 cut(s)	630
Psp124BI	GAGCTC	1 cut(s)	361
PspFI	CCCAGC	3 cut(s)	59, 80, 509
PspN4I	GGNNCC	4 cut(s)	34, 46, 97, 615
PspPI	GGNCC	4 cut(s)	33, 44, 95, 370
PstI	CTGCAG	1 cut(s)	116
PsuI	RGATCY	1 cut(s)	470
PvuII	CAGCTG	1 cut(s)	117
RsaI	GTAC	2 cut(s)	365, 385
RsaNI	GTAC	2 cut(s)	364, 384
SacI	GAGCTC	1 cut(s)	361
SacII	CCGCGG	1 cut(s)	88
SaqAI	TTAA	2 cut(s)	26, 492
SatI	GCNGC	8 cut(s)	85, 88, 106, 109, 112, 115, 118, 153
Sau3AI	GATC	4 cut(s)	324, 340, 470, 567
Sau96I	GGNCC	4 cut(s)	33, 44, 95, 370
SchI	GAGTC	1 cut(s)	631
ScrFI	CCNGG	1 cut(s)	577
SduI	GDGCHC	1 cut(s)	361
SfcI	CTRYAG	1 cut(s)	112
Sfr303I	CCGCGG	1 cut(s)	88
SgrBI	CCGCGG	1 cut(s)	88
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
Sse9I	AATT	3 cut(s)	248, 458, 594
SsiI	CCGC	6 cut(s)	56, 76, 85, 87, 90, 202
SspMI	CTAG	2 cut(s)	173, 591
SstI	GAGCTC	1 cut(s)	361
StyD4I	CCNGG	1 cut(s)	575
StyI	CCWWGG	1 cut(s)	409
TaaI	ACNGT	1 cut(s)	388
TaiI	ACGT	1 cut(s)	228
TaqI	TCGA	1 cut(s)	688
TasI	AATT	3 cut(s)	248, 458, 594
TauI	GCSGC	2 cut(s)	87, 90
TfiI	GAWTC	1 cut(s)	547
Tru1I	TTAA	2 cut(s)	26, 492
Tru9I	TTAA	2 cut(s)	26, 492
TseFI	GTSAC	2 cut(s)	226, 602
TseI	GCWGC	6 cut(s)	105, 108, 111, 114, 117, 152
Tsp45I	GTSAC	2 cut(s)	226, 602
TspDTI	ATGAA	3 cut(s)	154, 510, 545
XspI	CTAG	2 cut(s)	173, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.