Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001177

Physical Location & Seq

Genomic Coordinates Forward (+)

15110492 .. 15111539

Gene Structure 1048 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G35980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGCTGCTGAACAACCTCTCAATGGCGCCTTCTACGGTCCATCAGTCCCACCACCAGCTCCCAAAGGCTACTACCGACGTGGGCACGGTCGTGGCTGTGGCTGCTGCCTCCTCAGCTTATTCGTCAAAGTAATCATATCCCTTATTGTCATCCTCGGCGTAGCCGCTCTCATCTTCTGGCTCATCGTCCGACCTCGTGCCATCAAGTTTCACGTGACCGATGCGTCCCTTACCCGCTTTGACCACACTTCCCCGGACAACATTTTAAGGTATAACCTAGCCCTCACTGTTCCTGTCCGTAACCCAAACAAGAGGATCGGACTCTACTACGATAGGATCGAAGCTCATGCCTACTACGAGGGAAAGCGGTTTAGTACCATCACGTTAACTCCTTTCTATCAAGGACACAAAAACACAACCGTTCTCACACCAACGTTCCAAGGCCAAAACCTTGTTATTTTTAACGCCGGACAGTCTAGGACTTTAAACGCGGAGAGGATATCCGGTGTATACAATATAGAGATCAAGTTCAGGCTTAGGGTTAGGTTTAAGCTTGGGGACTTGAAGTTTAGGAGGATTAAGCCTAAGGTTGATTGCGATGATCTAAGGCTTCCTTTAAGTACCTCAAACGGAACTACAACTACCTCCACTGTTTTCCCGATCAAGTGCGACTTCGACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0007275 GO:0007568 GO:0008150 GO:0009506 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009615 GO:0010150 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0046658 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0090693 GO:0098542 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

227

Amino Acids

25.66

Weight (kDa)

9.95

Isoelectric Point (pI)

45.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	96 - 199	6e-15	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35460 AT2G35980 AT3G11650 AT5G06320
fragaria_vesca	FvH4_6g20130 FvH4_6g20140
malus_domestica	MD12G1038600.v1.1 MD14G1037300.v1.1
prunus_persica	Prupe.6G357300_v2.0.a1 Prupe.7G097200_v2.0.a1
pyrus_communis	pycom14g03260
rosa_chinensis	RchiOBHm_Chr3g0475591 RchiOBHm_Chr3g0475631 RchiOBHm_Chr3g0475641 RchiOBHm_Chr3g0475651 RchiOBHm_Chr3g0475661
rosa_laevigata	RLG00000023825 RLG00000023826 RLG00000023827 RLG00000023828 RLG00000023830
rosa_multiflora	Rmu_co8195028.1_g000001 Rmu_sc0000539.1_g000033 Rmu_sc0000539.1_g000043 Rmu_sc0000539.1_g000048 Rmu_sc0000539.1_g000055
rosa_roxburghii	Rroxscaffold_6G00406030 Rroxscaffold_6G00406040 Rroxscaffold_6G00406070 Rroxscaffold_6G00406080 Rroxscaffold_6G00406100 Rroxscaffold_6G00406110
rosa_rugosa	Rorug03G0150500 Rorug03G0150500 Rorug03G0150600 Rorug03G0150700 Rorug03G0150800 Rorug03G0150800
rosa_samantha	Rh3AG200100 Rh3AG200200 Rh3AG200300 Rh3BG230500 Rh3BG230600 Rh3BG230700 Rh3CG224800 Rh3CG225000 Rh3CG225100 Rh3CG225200 Rh3CG225300 Rh3DG225600 Rh3DG225700 Rh3DG225800
rosa_wichuraiana	Rw3G018150 Rw3G018170 Rw3G018180 Rw3G018190 Rw3G018200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	223
AccB1I	GGYRCC	1 cut(s)	26
AccBSI	CCGCTC	1 cut(s)	167
AccI	GTMKAC	1 cut(s)	510
AccII	CGCG	1 cut(s)	491
AciI	CCGC	4 cut(s)	165, 235, 367, 491
AclI	AACGTT	1 cut(s)	434
AclWI	GGATC	2 cut(s)	323, 344
AcvI	CACGTG	1 cut(s)	214
AcyI	GRCGYC	1 cut(s)	27
AfaI	GTAC	2 cut(s)	376, 622
AfiI	CCNNNNNNNGG	1 cut(s)	23
AgsI	TTSAA	1 cut(s)	565
AjiI	CACGTC	1 cut(s)	80
AleI	CACNNNNGTG	1 cut(s)	90
AluBI	AGCT	4 cut(s)	59, 117, 344, 553
AluI	AGCT	4 cut(s)	59, 117, 344, 553
AlwI	GGATC	2 cut(s)	323, 344
AoxI	GGCC	1 cut(s)	442
ApeKI	GCWGC	3 cut(s)	5, 102, 105
AspLEI	GCGC	1 cut(s)	29
AspS9I	GGNCC	1 cut(s)	38
AsuC2I	CCSGG	1 cut(s)	254
AvaII	GGWCC	1 cut(s)	38
AxyI	CCTNAGG	1 cut(s)	585
BaeGI	GKGCMC	1 cut(s)	87
BanI	GGYRCC	1 cut(s)	26
BauI	CACGAG	1 cut(s)	195
BbrPI	CACGTG	1 cut(s)	214
BbvCI	CCTCAGC	1 cut(s)	113
BbvI	GCAGC	2 cut(s)	89, 92
BccI	CCATC	3 cut(s)	49, 209, 386
BcgI	CGANNNNNNTGC	2 cut(s)	329, 363
BcnI	CCSGG	1 cut(s)	254
BfaI	CTAG	2 cut(s)	278, 477
BfoI	RGCGCY	1 cut(s)	30
BisI	GCNGC	4 cut(s)	6, 103, 106, 165
BlsI	GCNGC	4 cut(s)	7, 104, 107, 166
Bme1390I	CCNGG	1 cut(s)	254
Bme18I	GGWCC	1 cut(s)	38
BmgBI	CACGTC	1 cut(s)	80
BmgT120I	GGNCC	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	28
BmrFI	CCNGG	1 cut(s)	254
BmsI	GCATC	1 cut(s)	211
Bpu10I	CCTNAGC	2 cut(s)	113, 536
BpuMI	CCSGG	1 cut(s)	254
BsaAI	YACGTR	1 cut(s)	214
BsaHI	GRCGYC	1 cut(s)	27
BsaJI	CCNNGG	3 cut(s)	154, 252, 439
BsaWI	WCCGGW	1 cut(s)	503
BsaXI	ACNNNNNCTCC	2 cut(s)	373, 403
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse21I	CCTNAGG	1 cut(s)	585
BseDI	CCNNGG	3 cut(s)	154, 252, 439
BseGI	GGATG	1 cut(s)	150
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseMII	CTCAG	1 cut(s)	127
BseRI	GAGGAG	1 cut(s)	101
BseSI	GKGCMC	1 cut(s)	87
BseXI	GCAGC	2 cut(s)	89, 92
Bsh1236I	CGCG	1 cut(s)	491
Bsh1285I	CGRYCG	1 cut(s)	91
BshFI	GGCC	1 cut(s)	444
BshNI	GGYRCC	1 cut(s)	26
BsiEI	CGRYCG	1 cut(s)	91
BsiSI	CCGG	3 cut(s)	254, 468, 504
BslFI	GGGAC	3 cut(s)	32, 211, 572
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmFI	GGGAC	3 cut(s)	32, 211, 572
BsnI	GGCC	1 cut(s)	444
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp143I	GATC	5 cut(s)	315, 336, 522, 601, 660
BspACI	CCGC	4 cut(s)	165, 235, 367, 491
BspANI	GGCC	1 cut(s)	444
BspCNI	CTCAG	1 cut(s)	126
BspFNI	CGCG	1 cut(s)	491
BspLI	GGNNCC	1 cut(s)	28
BspPI	GGATC	2 cut(s)	323, 344
BspT107I	GGYRCC	1 cut(s)	26
BsrBI	CCGCTC	1 cut(s)	167
BssECI	CCNNGG	3 cut(s)	154, 252, 439
BssMI	GATC	5 cut(s)	315, 336, 522, 601, 660
BssNAI	GTATAC	1 cut(s)	511
BssNI	GRCGYC	1 cut(s)	27
BssSI	CACGAG	1 cut(s)	195
BssT1I	CCWWGG	1 cut(s)	439
Bst1107I	GTATAC	1 cut(s)	511
Bst2BI	CACGAG	1 cut(s)	195
Bst4CI	ACNGT	6 cut(s)	38, 89, 289, 421, 474, 652
BstACI	GRCGYC	1 cut(s)	27
BstBAI	YACGTR	1 cut(s)	214
BstDEI	CTNAG	4 cut(s)	113, 536, 585, 605
BstF5I	GGATG	1 cut(s)	150
BstFNI	CGCG	1 cut(s)	491
BstH2I	RGCGCY	1 cut(s)	30
BstHHI	GCGC	1 cut(s)	29
BstKTI	GATC	5 cut(s)	318, 339, 525, 604, 663
BstMBI	GATC	5 cut(s)	315, 336, 522, 601, 660
BstMCI	CGRYCG	1 cut(s)	91
BstMWI	GCNNNNNNNGC	2 cut(s)	102, 114
BstSCI	CCNGG	1 cut(s)	252
BstSLI	GKGCMC	1 cut(s)	87
BstUI	CGCG	1 cut(s)	491
BstV1I	GCAGC	2 cut(s)	89, 92
BstZ17I	GTATAC	1 cut(s)	511
Bsu36I	CCTNAGG	1 cut(s)	585
BsuRI	GGCC	1 cut(s)	444
BtgZI	GCGATG	1 cut(s)	612
BtrI	CACGTC	1 cut(s)	80
BtsCI	GGATG	1 cut(s)	150
BtsIMutI	CAGTG	2 cut(s)	285, 648
CfoI	GCGC	1 cut(s)	29
Cfr13I	GGNCC	1 cut(s)	38
CseI	GACGC	1 cut(s)	213
Csp6I	GTAC	2 cut(s)	375, 621
CviAII	CATG	1 cut(s)	347
CviQI	GTAC	2 cut(s)	375, 621
DdeI	CTNAG	4 cut(s)	113, 536, 585, 605
DinI	GGCGCC	1 cut(s)	28
DpnI	GATC	5 cut(s)	317, 338, 524, 603, 662
DpnII	GATC	5 cut(s)	315, 336, 522, 601, 660
DraI	TTTAAA	1 cut(s)	486
DrdI	GACNNNNNNGTC	1 cut(s)	223
DseDI	GACNNNNNNGTC	1 cut(s)	223
Eco130I	CCWWGG	1 cut(s)	439
Eco32I	GATATC	1 cut(s)	501
Eco47I	GGWCC	1 cut(s)	38
Eco72I	CACGTG	1 cut(s)	214
Eco81I	CCTNAGG	1 cut(s)	585
EcoRV	GATATC	1 cut(s)	501
EcoT14I	CCWWGG	1 cut(s)	439
EgeI	GGCGCC	1 cut(s)	28
EheI	GGCGCC	1 cut(s)	28
ErhI	CCWWGG	1 cut(s)	439
FaeI	CATG	1 cut(s)	350
FaiI	YATR	5 cut(s)	137, 273, 348, 511, 518
FalI	AAGNNNNNCTT	3 cut(s)	598, 630, 656
FaqI	GGGAC	3 cut(s)	32, 211, 572
FatI	CATG	1 cut(s)	346
FauI	CCCGC	1 cut(s)	242
FblI	GTMKAC	1 cut(s)	510
Fnu4HI	GCNGC	4 cut(s)	6, 103, 106, 165
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	4 cut(s)	6, 103, 106, 165
FspBI	CTAG	2 cut(s)	278, 477
GlaI	GCGC	1 cut(s)	28
GluI	GCNGC	4 cut(s)	6, 103, 106, 165
HaeII	RGCGCY	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	444
HapII	CCGG	3 cut(s)	254, 468, 504
HgaI	GACGC	1 cut(s)	213
HhaI	GCGC	1 cut(s)	29
Hin1I	GRCGYC	1 cut(s)	27
Hin1II	CATG	1 cut(s)	350
Hin6I	GCGC	1 cut(s)	27
HinP1I	GCGC	1 cut(s)	27
HincII	GTYRAC	1 cut(s)	387
HindII	GTYRAC	1 cut(s)	387
HindIII	AAGCTT	1 cut(s)	551
HinfI	GANTC	1 cut(s)	321
HpaI	GTTAAC	1 cut(s)	387
HpaII	CCGG	3 cut(s)	254, 468, 504
Hpy166II	GTNNAC	2 cut(s)	387, 511
Hpy188I	TCNGA	3 cut(s)	191, 320, 683
Hpy188III	TCNNGA	1 cut(s)	658
Hpy8I	GTNNAC	2 cut(s)	387, 511
Hpy99I	CGWCG	1 cut(s)	81
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	6 cut(s)	38, 89, 289, 421, 474, 652
HpyCH4IV	ACGT	4 cut(s)	79, 213, 383, 434
HpyF10VI	GCNNNNNNNGC	2 cut(s)	102, 114
HpyF3I	CTNAG	4 cut(s)	113, 536, 585, 605
HpySE526I	ACGT	4 cut(s)	79, 213, 383, 434
Hsp92I	GRCGYC	1 cut(s)	27
Hsp92II	CATG	1 cut(s)	350
HspAI	GCGC	1 cut(s)	27
KasI	GGCGCC	1 cut(s)	26
KspAI	GTTAAC	1 cut(s)	387
Kzo9I	GATC	5 cut(s)	315, 336, 522, 601, 660
LmnI	GCTCC	1 cut(s)	64
LpnPI	CCDG	7 cut(s)	69, 163, 267, 306, 481, 517, 517
Lsp1109I	GCAGC	2 cut(s)	89, 92
LweI	GCATC	1 cut(s)	211
MaeI	CTAG	2 cut(s)	278, 477
MaeII	ACGT	4 cut(s)	79, 213, 383, 434
MaeIII	GTNAC	2 cut(s)	214, 299
MalI	GATC	5 cut(s)	317, 338, 524, 603, 662
MbiI	CCGCTC	1 cut(s)	167
MboI	GATC	5 cut(s)	315, 336, 522, 601, 660
MboII	GAAGA	1 cut(s)	166
MhlI	GDGCHC	1 cut(s)	87
Mly113I	GGCGCC	1 cut(s)	27
MlyI	GAGTC	1 cut(s)	315
MmeI	TCCRAC	1 cut(s)	214
MseI	TTAA	7 cut(s)	266, 386, 462, 485, 549, 579, 617
MslI	CAYNNNNRTG	1 cut(s)	90
MspI	CCGG	3 cut(s)	254, 468, 504
MspR9I	CCNGG	1 cut(s)	254
MvnI	CGCG	1 cut(s)	491
MwoI	GCNNNNNNNGC	2 cut(s)	102, 114
NarI	GGCGCC	1 cut(s)	27
NciI	CCSGG	1 cut(s)	254
NdeII	GATC	5 cut(s)	315, 336, 522, 601, 660
NlaIII	CATG	1 cut(s)	350
NlaIV	GGNNCC	1 cut(s)	28
NmeAIII	GCCGAG	1 cut(s)	135
NmuCI	GTSAC	1 cut(s)	214
OliI	CACNNNNGTG	1 cut(s)	90
PcsI	WCGNNNNNNNCGW	1 cut(s)	336
PkrI	GCNGC	4 cut(s)	7, 104, 107, 166
PleI	GAGTC	1 cut(s)	315
PluTI	GGCGCC	1 cut(s)	30
PmaCI	CACGTG	1 cut(s)	214
PmlI	CACGTG	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	315
Ppu21I	YACGTR	1 cut(s)	214
Psp1406I	AACGTT	1 cut(s)	434
PspCI	CACGTG	1 cut(s)	214
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	1 cut(s)	38
PsrI	GAACNNNNNNTAC	2 cut(s)	625, 657
RsaI	GTAC	2 cut(s)	376, 622
RsaNI	GTAC	2 cut(s)	375, 621
RseI	CAYNNNNRTG	1 cut(s)	90
SaqAI	TTAA	7 cut(s)	266, 386, 462, 485, 549, 579, 617
SatI	GCNGC	4 cut(s)	6, 103, 106, 165
Sau3AI	GATC	5 cut(s)	315, 336, 522, 601, 660
Sau96I	GGNCC	1 cut(s)	38
SchI	GAGTC	1 cut(s)	315
ScrFI	CCNGG	1 cut(s)	254
SduI	GDGCHC	1 cut(s)	87
SfaNI	GCATC	1 cut(s)	211
SfoI	GGCGCC	1 cut(s)	28
SinI	GGWCC	1 cut(s)	38
SmiMI	CAYNNNNRTG	1 cut(s)	90
SsiI	CCGC	4 cut(s)	165, 235, 367, 491
SspDI	GGCGCC	1 cut(s)	26
SspMI	CTAG	2 cut(s)	278, 477
StyD4I	CCNGG	1 cut(s)	252
StyI	CCWWGG	1 cut(s)	439
TaaI	ACNGT	6 cut(s)	38, 89, 289, 421, 474, 652
TaiI	ACGT	4 cut(s)	82, 216, 386, 437
TaqI	TCGA	2 cut(s)	339, 675
TaqII	GACCGA	1 cut(s)	233
TauI	GCSGC	1 cut(s)	167
Tru1I	TTAA	7 cut(s)	266, 386, 462, 485, 549, 579, 617
Tru9I	TTAA	7 cut(s)	266, 386, 462, 485, 549, 579, 617
TscAI	CASTG	2 cut(s)	292, 655
TseFI	GTSAC	1 cut(s)	214
TseI	GCWGC	3 cut(s)	5, 102, 105
Tsp45I	GTSAC	1 cut(s)	214
TspGWI	ACGGA	2 cut(s)	287, 645
TspRI	CASTG	2 cut(s)	292, 655
VpaK11BI	GGWCC	1 cut(s)	38
XmiI	GTMKAC	1 cut(s)	510
XspI	CTAG	2 cut(s)	278, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.