Rh3CG224800

YLS9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0001177
Physical Location & Seq
Reverse (-)
21049856 .. 21051259
1404 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG224800.1

Sequence Viewer

Length: 684 bp
ATGTCGGAGAAACAAGGCTTGAATGGAGCCTACTACGGCCCATCCATCCCGCCCAAGAGGGAGTCATACCAAAGCGTCGGCCGCGGCGGAGGTCCCCTCGGCTGCTGCTGCAGCTGTATCTTCGGCCTCGTCTTCAAGCTCATCTTCACCGCCATCGTCTTCATGGGCCTGGCCTTCTTCGTCTTCTGGCTCATAGTCAAACCCAACCGTGTCAAGTTCCACGTCACCGACGCCGCCCTCACCCAGTTCAACTACTCCTCCGACAACAACCTCCACTACAACCTCGCCCTCAACCTCACCATCCGAAACCCAAACAAAAAGCTCGGCATCTACTACGACCGCATCGAAGCCAGAGCTAACTACGAGGGCCAGAGGTTCAGCACGATCACTCTCACCCCGTTTTACCAAGGACACAAAACCACCAACGTTTTGAACCCCGTGTTCAATGGACAGCAGTTGCTTGTTGGGTCCAATTTGCAGTCGGAGTATCAAAAGCAGACGAGTGCAGGAATTTACGAGATTGAGATGAAGCTTTACTTGAGGATTCGGTTCAAGTTCGGTCGGATCAAGACCGGAAAGTTCAAGCCCAGAGTTGAATGTGACTTGAAGGTTCCTTTGAGTACGAATGGGAATTCCGCAACTACTTTTGAGACCAAGAGGTGCAAAATTGATTACTTCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

227

Amino Acids

25.83

Weight (kDa)

9.64

Isoelectric Point (pI)

34.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 99 - 199 2e-09 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 84
AciI CCGC 8 cut(s) 50, 82, 84, 87, 150, 234, 340, 636
AclI AACGTT 1 cut(s) 426
AclWI GGATC 1 cut(s) 572
AcoI YGGCCR 1 cut(s) 79
AcsI RAATTY 2 cut(s) 510, 631
AcyI GRCGYC 1 cut(s) 231
AfaI GTAC 1 cut(s) 622
AjiI CACGTC 1 cut(s) 223
AjnI CCWGG 1 cut(s) 168
AluBI AGCT 5 cut(s) 114, 139, 322, 356, 532
AluI AGCT 5 cut(s) 114, 139, 322, 356, 532
Alw26I GTCTC 1 cut(s) 644
AlwI GGATC 1 cut(s) 572
AoxI GGCC 6 cut(s) 37, 79, 124, 166, 171, 367
ApeKI GCWGC 4 cut(s) 102, 105, 108, 111
ApoI RAATTY 2 cut(s) 510, 631
AspS9I GGNCC 5 cut(s) 38, 92, 166, 367, 468
AsuHPI GGTGA 5 cut(s) 139, 217, 232, 289, 385
AvaII GGWCC 2 cut(s) 92, 468
BbsI GAAGAC 3 cut(s) 124, 151, 175
BbvI GCAGC 4 cut(s) 89, 92, 95, 123
BccI CCATC 4 cut(s) 49, 53, 161, 308
BceAI ACGGC 1 cut(s) 52
BciT130I CCWGG 1 cut(s) 170
BcoDI GTCTC 1 cut(s) 644
BfmI CTRYAG 1 cut(s) 109
BisI GCNGC 7 cut(s) 82, 85, 103, 106, 109, 112, 234
BlsI GCNGC 7 cut(s) 83, 86, 104, 107, 110, 113, 235
Bme1390I CCNGG 1 cut(s) 170
Bme18I GGWCC 2 cut(s) 92, 468
BmgBI CACGTC 1 cut(s) 223
BmgT120I GGNCC 5 cut(s) 38, 92, 166, 367, 468
BmiI GGNNCC 4 cut(s) 28, 94, 469, 612
BmrFI CCNGG 1 cut(s) 170
BmrI ACTGGG 1 cut(s) 238
BmsI GCATC 2 cut(s) 336, 351
BmuI ACTGGG 1 cut(s) 238
BpiI GAAGAC 3 cut(s) 124, 151, 175
BplI GAGNNNNNCTC 2 cut(s) 81, 113
BpuEI CTTGAG 1 cut(s) 559
BsaHI GRCGYC 1 cut(s) 231
BsaI GGTCTC 1 cut(s) 644
BsaJI CCNNGG 3 cut(s) 82, 97, 406
BsaWI WCCGGW 1 cut(s) 572
BsaXI ACNNNNNCTCC 2 cut(s) 242, 272
Bse1I ACTGG 1 cut(s) 244
BseBI CCWGG 1 cut(s) 170
BseDI CCNNGG 3 cut(s) 82, 97, 406
BseGI GGATG 3 cut(s) 41, 45, 300
BseNI ACTGG 1 cut(s) 244
BseRI GAGGAG 1 cut(s) 247
BseX3I CGGCCG 1 cut(s) 79
BseXI GCAGC 4 cut(s) 89, 92, 95, 123
BsgI GTGCAG 1 cut(s) 525
Bsh1236I CGCG 1 cut(s) 84
Bsh1285I CGRYCG 3 cut(s) 82, 340, 562
BshFI GGCC 6 cut(s) 39, 81, 126, 168, 173, 369
BsiEI CGRYCG 3 cut(s) 82, 340, 562
BsiSI CCGG 1 cut(s) 573
BslFI GGGAC 1 cut(s) 78
BsmAI GTCTC 1 cut(s) 644
BsmFI GGGAC 1 cut(s) 78
BsnI GGCC 6 cut(s) 39, 81, 126, 168, 173, 369
Bso31I GGTCTC 1 cut(s) 644
Bsp143I GATC 2 cut(s) 384, 564
BspACI CCGC 8 cut(s) 50, 82, 84, 87, 150, 234, 340, 636
BspANI GGCC 6 cut(s) 39, 81, 126, 168, 173, 369
BspFNI CGCG 1 cut(s) 84
BspLI GGNNCC 4 cut(s) 28, 94, 469, 612
BspMAI CTGCAG 1 cut(s) 113
BspPI GGATC 1 cut(s) 572
BspTNI GGTCTC 1 cut(s) 644
BsrI ACTGG 1 cut(s) 244
BssECI CCNNGG 3 cut(s) 82, 97, 406
BssMI GATC 2 cut(s) 384, 564
BssNI GRCGYC 1 cut(s) 231
BssT1I CCWWGG 1 cut(s) 406
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 1 cut(s) 209
BstACI GRCGYC 1 cut(s) 231
BstDSI CCRYGG 1 cut(s) 82
BstF5I GGATG 3 cut(s) 41, 45, 300
BstFNI CGCG 1 cut(s) 84
BstKTI GATC 2 cut(s) 387, 567
BstMAI GTCTC 1 cut(s) 644
BstMBI GATC 2 cut(s) 384, 564
BstMCI CGRYCG 3 cut(s) 82, 340, 562
BstMWI GCNNNNNNNGC 3 cut(s) 81, 108, 111
BstNI CCWGG 1 cut(s) 170
BstSCI CCNGG 1 cut(s) 168
BstSFI CTRYAG 1 cut(s) 109
BstUI CGCG 1 cut(s) 84
BstV1I GCAGC 4 cut(s) 89, 92, 95, 123
BstV2I GAAGAC 3 cut(s) 124, 151, 175
BstZI CGGCCG 1 cut(s) 79
BsuRI GGCC 6 cut(s) 39, 81, 126, 168, 173, 369
BtgI CCRYGG 1 cut(s) 82
BtrI CACGTC 1 cut(s) 223
BtsCI GGATG 3 cut(s) 41, 45, 300
Cfr13I GGNCC 5 cut(s) 38, 92, 166, 367, 468
Cfr42I CCGCGG 1 cut(s) 85
CseI GACGC 2 cut(s) 64, 239
Csp6I GTAC 1 cut(s) 621
CviAII CATG 1 cut(s) 163
CviQI GTAC 1 cut(s) 621
DpnI GATC 2 cut(s) 386, 566
DpnII GATC 2 cut(s) 384, 564
EaeI YGGCCR 1 cut(s) 79
EagI CGGCCG 1 cut(s) 79
EciI GGCGGA 1 cut(s) 102
EclXI CGGCCG 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 406
Eco31I GGTCTC 1 cut(s) 644
Eco47I GGWCC 2 cut(s) 92, 468
Eco52I CGGCCG 1 cut(s) 79
EcoO109I RGGNCCY 1 cut(s) 92
EcoRI GAATTC 1 cut(s) 631
EcoRII CCWGG 1 cut(s) 168
EcoT14I CCWWGG 1 cut(s) 406
ErhI CCWWGG 1 cut(s) 406
FaeI CATG 1 cut(s) 166
FaiI YATR 3 cut(s) 67, 164, 194
FalI AAGNNNNNCTT 4 cut(s) 128, 160, 521, 553
FaqI GGGAC 1 cut(s) 78
FatI CATG 1 cut(s) 162
FauI CCCGC 1 cut(s) 57
Fnu4HI GCNGC 7 cut(s) 82, 85, 103, 106, 109, 112, 234
FokI GGATG 3 cut(s) 28, 32, 287
Fsp4HI GCNGC 7 cut(s) 82, 85, 103, 106, 109, 112, 234
GluI GCNGC 7 cut(s) 82, 85, 103, 106, 109, 112, 234
HaeIII GGCC 6 cut(s) 39, 81, 126, 168, 173, 369
HapII CCGG 1 cut(s) 573
HgaI GACGC 2 cut(s) 64, 239
Hin1I GRCGYC 1 cut(s) 231
Hin1II CATG 1 cut(s) 166
HindIII AAGCTT 1 cut(s) 530
HinfI GANTC 2 cut(s) 62, 544
HpaII CCGG 1 cut(s) 573
HphI GGTGA 5 cut(s) 139, 217, 232, 289, 385
Hpy188I TCNGA 5 cut(s) 7, 262, 305, 484, 564
Hpy188III TCNNGA 1 cut(s) 568
Hpy99I CGWCG 2 cut(s) 80, 233
HpyAV CCTTC 2 cut(s) 184, 601
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4IV ACGT 2 cut(s) 222, 426
HpyCH4V TGCA 4 cut(s) 111, 478, 506, 663
HpyF10VI GCNNNNNNNGC 3 cut(s) 81, 108, 111
HpySE526I ACGT 2 cut(s) 222, 426
Hsp92I GRCGYC 1 cut(s) 231
Hsp92II CATG 1 cut(s) 166
KspI CCGCGG 1 cut(s) 85
Kzo9I GATC 2 cut(s) 384, 564
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 9 cut(s) 155, 172, 182, 257, 364, 383, 492, 586, 601
Lsp1109I GCAGC 4 cut(s) 89, 92, 95, 123
LweI GCATC 2 cut(s) 336, 351
MaeII ACGT 2 cut(s) 222, 426
MaeIII GTNAC 2 cut(s) 223, 599
MalI GATC 2 cut(s) 386, 566
MboI GATC 2 cut(s) 384, 564
MboII GAAGA 6 cut(s) 112, 124, 136, 151, 169, 175
MluCI AATT 5 cut(s) 472, 510, 631, 666, 679
MlyI GAGTC 1 cut(s) 71
MmeI TCCRAC 3 cut(s) 285, 462, 542
MspA1I CMGCKG 2 cut(s) 84, 114
MspI CCGG 1 cut(s) 573
MspR9I CCNGG 1 cut(s) 170
MvaI CCWGG 1 cut(s) 170
MvnI CGCG 1 cut(s) 84
MwoI GCNNNNNNNGC 3 cut(s) 81, 108, 111
NdeII GATC 2 cut(s) 384, 564
NlaIII CATG 1 cut(s) 166
NlaIV GGNNCC 4 cut(s) 28, 94, 469, 612
NmeAIII GCCGAG 2 cut(s) 78, 303
NmuCI GTSAC 2 cut(s) 223, 599
PcsI WCGNNNNNNNCGW 1 cut(s) 342
PfeI GAWTC 1 cut(s) 544
PkrI GCNGC 7 cut(s) 83, 86, 104, 107, 110, 113, 235
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
PpuMI RGGWCCY 1 cut(s) 92
Psp1406I AACGTT 1 cut(s) 426
Psp5II RGGWCCY 1 cut(s) 92
Psp6I CCWGG 1 cut(s) 168
PspGI CCWGG 1 cut(s) 168
PspN4I GGNNCC 4 cut(s) 28, 94, 469, 612
PspPI GGNCC 5 cut(s) 38, 92, 166, 367, 468
PspPPI RGGWCCY 1 cut(s) 92
PstI CTGCAG 1 cut(s) 113
PvuII CAGCTG 1 cut(s) 114
RsaI GTAC 1 cut(s) 622
RsaNI GTAC 1 cut(s) 621
SacII CCGCGG 1 cut(s) 85
SatI GCNGC 7 cut(s) 82, 85, 103, 106, 109, 112, 234
Sau3AI GATC 2 cut(s) 384, 564
Sau96I GGNCC 5 cut(s) 38, 92, 166, 367, 468
SchI GAGTC 1 cut(s) 71
ScrFI CCNGG 1 cut(s) 170
SfaNI GCATC 2 cut(s) 336, 351
SfcI CTRYAG 1 cut(s) 109
Sfr303I CCGCGG 1 cut(s) 85
SgrBI CCGCGG 1 cut(s) 85
SinI GGWCC 2 cut(s) 92, 468
SmlI CTYRAG 1 cut(s) 538
SmoI CTYRAG 1 cut(s) 538
Sse9I AATT 5 cut(s) 472, 510, 631, 666, 679
SsiI CCGC 8 cut(s) 50, 82, 84, 87, 150, 234, 340, 636
StyD4I CCNGG 1 cut(s) 168
StyI CCWWGG 1 cut(s) 406
TaaI ACNGT 1 cut(s) 209
TaiI ACGT 2 cut(s) 225, 429
TaqI TCGA 1 cut(s) 345
TaqII GACCGA 1 cut(s) 548
TasI AATT 5 cut(s) 472, 510, 631, 666, 679
TauI GCSGC 3 cut(s) 84, 87, 236
TfiI GAWTC 1 cut(s) 544
TseFI GTSAC 2 cut(s) 223, 599
TseI GCWGC 4 cut(s) 102, 105, 108, 111
Tsp45I GTSAC 2 cut(s) 223, 599
TspDTI ATGAA 2 cut(s) 151, 542
VpaK11BI GGWCC 2 cut(s) 92, 468
XapI RAATTY 2 cut(s) 510, 631
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.