Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0001177

Physical Location & Seq

Genomic Coordinates Forward (+)

28826383 .. 28828051

Gene Structure 1669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023828

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGGCAGAGAAAGAAGAAGCCCACTTAAACGGGGCATACTACGGCCCCTCAGTCCCGGCCAGCAAATCCTACCACCGTCCCAGCCGCGGCGGTGGCCCCCTCGGCTGCTGCTGCAGCTGCATCTTCGGCCTCGTCTTCAAAATCATCTTCGCAGCAGTCGTCTTCATGGGACTAGCCTTCCTCGTCTTCTGGCTCATAGTCCGCCCCACTAAAGTCAAGTTCCACGTCACCGACGCCACGCTCACCCAATTCAACTTCTCCACCGATAGCAACCTGCATTACAACCTAACCCTCAACCTCACCATTCGAAACCCCAACAAGAAGATCGGTGTCTACTACGACCGCATTGAAGCCAGAGCTCTTTACGAGGGCCAGAGGTTTAGTACGGTCACGCTCACGCCATTTTACCAAGGCCACAAAACCACAAACGTTTTGAACCCGGTGTTTCAGGGACAGCAATTGATTGTTGGATCCAACTTGCTTGAGGAGTTTAATCAACAGAAAAGTGCAGGGGTTTACGAGATTGAGATGAAACTTTATTTGAGGATTCGGTTCAAGTTGGGTGGAATCAAGACTGGAAAGTTCAAGCCTAGAATTGAATGTGACTTGAAGGTTCCTTTGAACCAGAATGGGAATTCAGTTAGTACTTTTCAGACGGAGAATTTTTGTCCTGTTCCACCGCCTCAAGCCTTTTCTTATCGTTTGGGTTTAGTTCTCACTAACATTGTGAGTTGGTTTCAGACTGAGAAAGCTTTTCTGAAGCAGCCCAAAGTGTTCTTGAGTTTTAGCTTGAAGAAAACACGGAAGGGTAAGAGCCCTGGAAAGGGAGGCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

279

Amino Acids

31.27

Weight (kDa)

9.78

Isoelectric Point (pI)

33.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	100 - 197	2e-10	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35460 AT2G35980 AT3G11650 AT5G06320
fragaria_vesca	FvH4_6g20130 FvH4_6g20140
malus_domestica	MD12G1038600.v1.1 MD14G1037300.v1.1
prunus_persica	Prupe.6G357300_v2.0.a1 Prupe.7G097200_v2.0.a1
pyrus_communis	pycom14g03260
rosa_chinensis	RchiOBHm_Chr3g0475591 RchiOBHm_Chr3g0475631 RchiOBHm_Chr3g0475641 RchiOBHm_Chr3g0475651 RchiOBHm_Chr3g0475661
rosa_laevigata	RLG00000023825 RLG00000023826 RLG00000023827 RLG00000023828 RLG00000023830
rosa_multiflora	Rmu_co8195028.1_g000001 Rmu_sc0000539.1_g000033 Rmu_sc0000539.1_g000043 Rmu_sc0000539.1_g000048 Rmu_sc0000539.1_g000055
rosa_roxburghii	Rroxscaffold_6G00406030 Rroxscaffold_6G00406040 Rroxscaffold_6G00406070 Rroxscaffold_6G00406080 Rroxscaffold_6G00406100 Rroxscaffold_6G00406110
rosa_rugosa	Rorug03G0150500 Rorug03G0150500 Rorug03G0150600 Rorug03G0150700 Rorug03G0150800 Rorug03G0150800
rosa_samantha	Rh3AG200100 Rh3AG200200 Rh3AG200300 Rh3BG230500 Rh3BG230600 Rh3BG230700 Rh3CG224800 Rh3CG225000 Rh3CG225100 Rh3CG225200 Rh3CG225300 Rh3DG225600 Rh3DG225700 Rh3DG225800
rosa_wichuraiana	Rw3G018150 Rw3G018170 Rw3G018180 Rw3G018190 Rw3G018200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	282
AccI	GTMKAC	1 cut(s)	333
AccII	CGCG	1 cut(s)	87
AciI	CCGC	6 cut(s)	85, 87, 90, 202, 343, 680
AclI	AACGTT	1 cut(s)	429
AclWI	GGATC	2 cut(s)	465, 478
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	2 cut(s)	634, 661
AcuI	CTGAAG	1 cut(s)	779
AcyI	GRCGYC	1 cut(s)	234
AfaI	GTAC	2 cut(s)	385, 646
AfiI	CCNNNNNNNGG	3 cut(s)	86, 823, 824
AjiI	CACGTC	1 cut(s)	226
AjnI	CCWGG	1 cut(s)	817
AluBI	AGCT	4 cut(s)	117, 359, 752, 789
AluI	AGCT	4 cut(s)	117, 359, 752, 789
Alw21I	GWGCWC	1 cut(s)	361
AlwI	GGATC	2 cut(s)	465, 478
AoxI	GGCC	6 cut(s)	43, 57, 94, 127, 370, 412
ApeKI	GCWGC	7 cut(s)	105, 108, 111, 114, 117, 152, 763
ApoI	RAATTY	2 cut(s)	634, 661
AspS9I	GGNCC	3 cut(s)	44, 95, 370
AsuC2I	CCSGG	2 cut(s)	56, 440
AsuHPI	GGTGA	3 cut(s)	220, 235, 292
AsuII	TTCGAA	1 cut(s)	307
BamHI	GGATCC	1 cut(s)	470
BanII	GRGCYC	2 cut(s)	361, 818
BbsI	GAAGAC	3 cut(s)	127, 154, 178
Bbv12I	GWGCWC	1 cut(s)	361
BbvI	GCAGC	7 cut(s)	92, 95, 98, 104, 126, 164, 775
BceAI	ACGGC	1 cut(s)	58
BciT130I	CCWGG	1 cut(s)	819
BcnI	CCSGG	2 cut(s)	56, 440
BfaI	CTAG	2 cut(s)	173, 591
BfmI	CTRYAG	1 cut(s)	112
BfuAI	ACCTGC	1 cut(s)	282
BglI	GCCNNNNNGGC	1 cut(s)	102
BisI	GCNGC	9 cut(s)	85, 88, 106, 109, 112, 115, 118, 153, 764
BlsI	GCNGC	9 cut(s)	86, 89, 107, 110, 113, 116, 119, 154, 765
BmcAI	AGTACT	1 cut(s)	646
Bme1390I	CCNGG	3 cut(s)	56, 440, 819
BmgBI	CACGTC	1 cut(s)	226
BmgT120I	GGNCC	3 cut(s)	44, 95, 370
BmiI	GGNNCC	4 cut(s)	46, 97, 472, 615
BmrFI	CCNGG	3 cut(s)	56, 440, 819
BmsI	GCATC	1 cut(s)	129
BpiI	GAAGAC	3 cut(s)	127, 154, 178
Bpu14I	TTCGAA	1 cut(s)	307
BpuEI	CTTGAG	3 cut(s)	503, 669, 799
BpuMI	CCSGG	2 cut(s)	56, 440
BsaHI	GRCGYC	1 cut(s)	234
BsaJI	CCNNGG	4 cut(s)	85, 100, 409, 817
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 823, 824
Bse1I	ACTGG	1 cut(s)	580
BseBI	CCWGG	1 cut(s)	819
BseDI	CCNNGG	4 cut(s)	85, 100, 409, 817
BseLI	CCNNNNNNNGG	3 cut(s)	86, 823, 824
BseMII	CTCAG	2 cut(s)	63, 735
BseNI	ACTGG	1 cut(s)	580
BseRI	GAGGAG	1 cut(s)	500
BseXI	GCAGC	7 cut(s)	92, 95, 98, 104, 126, 164, 775
BseYI	CCCAGC	1 cut(s)	80
BsgI	GTGCAG	1 cut(s)	528
Bsh1236I	CGCG	1 cut(s)	87
Bsh1285I	CGRYCG	1 cut(s)	343
BshFI	GGCC	6 cut(s)	45, 59, 96, 129, 372, 414
BsiEI	CGRYCG	1 cut(s)	343
BsiHKAI	GWGCWC	1 cut(s)	361
BsiSI	CCGG	2 cut(s)	56, 440
BslFI	GGGAC	4 cut(s)	38, 63, 183, 465
BslI	CCNNNNNNNGG	3 cut(s)	86, 823, 824
BsmFI	GGGAC	4 cut(s)	38, 63, 183, 465
BsnI	GGCC	6 cut(s)	45, 59, 96, 129, 372, 414
Bsp119I	TTCGAA	1 cut(s)	307
Bsp1286I	GDGCHC	2 cut(s)	361, 818
Bsp143I	GATC	2 cut(s)	324, 470
BspACI	CCGC	6 cut(s)	85, 87, 90, 202, 343, 680
BspANI	GGCC	6 cut(s)	45, 59, 96, 129, 372, 414
BspCNI	CTCAG	2 cut(s)	62, 736
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	4 cut(s)	46, 97, 472, 615
BspMAI	CTGCAG	1 cut(s)	116
BspMI	ACCTGC	1 cut(s)	282
BspPI	GGATC	2 cut(s)	465, 478
BspT104I	TTCGAA	1 cut(s)	307
BsrI	ACTGG	1 cut(s)	580
BssECI	CCNNGG	4 cut(s)	85, 100, 409, 817
BssMI	GATC	2 cut(s)	324, 470
BssNI	GRCGYC	1 cut(s)	234
BssT1I	CCWWGG	1 cut(s)	409
Bst2UI	CCWGG	1 cut(s)	819
Bst4CI	ACNGT	2 cut(s)	77, 388
BstACI	GRCGYC	1 cut(s)	234
BstBI	TTCGAA	1 cut(s)	307
BstC8I	GCNNGC	1 cut(s)	61
BstDEI	CTNAG	2 cut(s)	49, 744
BstDSI	CCRYGG	1 cut(s)	85
BstFNI	CGCG	1 cut(s)	87
BstKTI	GATC	2 cut(s)	327, 473
BstMBI	GATC	2 cut(s)	324, 470
BstMCI	CGRYCG	1 cut(s)	343
BstMWI	GCNNNNNNNGC	6 cut(s)	93, 102, 111, 114, 117, 126
BstNI	CCWGG	1 cut(s)	819
BstSCI	CCNGG	3 cut(s)	54, 438, 817
BstSFI	CTRYAG	1 cut(s)	112
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	7 cut(s)	92, 95, 98, 104, 126, 164, 775
BstV2I	GAAGAC	3 cut(s)	127, 154, 178
BstX2I	RGATCY	1 cut(s)	470
BstYI	RGATCY	1 cut(s)	470
BsuRI	GGCC	6 cut(s)	45, 59, 96, 129, 372, 414
BtgI	CCRYGG	1 cut(s)	85
BtrI	CACGTC	1 cut(s)	226
BveI	ACCTGC	1 cut(s)	282
Cac8I	GCNNGC	1 cut(s)	61
Cfr13I	GGNCC	3 cut(s)	44, 95, 370
Cfr42I	CCGCGG	1 cut(s)	88
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	2 cut(s)	384, 645
CspCI	CAANNNNNGTGG	2 cut(s)	544, 579
CviAII	CATG	1 cut(s)	166
CviQI	GTAC	2 cut(s)	384, 645
DdeI	CTNAG	2 cut(s)	49, 744
DpnI	GATC	2 cut(s)	326, 472
DpnII	GATC	2 cut(s)	324, 470
EaeI	YGGCCR	1 cut(s)	57
EciI	GGCGGA	1 cut(s)	191
Ecl136II	GAGCTC	1 cut(s)	359
Eco130I	CCWWGG	1 cut(s)	409
Eco24I	GRGCYC	2 cut(s)	361, 818
Eco53kI	GAGCTC	1 cut(s)	359
Eco57I	CTGAAG	1 cut(s)	779
EcoICRI	GAGCTC	1 cut(s)	359
EcoRI	GAATTC	1 cut(s)	634
EcoRII	CCWGG	1 cut(s)	817
EcoT14I	CCWWGG	1 cut(s)	409
EcoT38I	GRGCYC	2 cut(s)	361, 818
ErhI	CCWWGG	1 cut(s)	409
FaeI	CATG	1 cut(s)	169
FaiI	YATR	3 cut(s)	37, 167, 197
FaqI	GGGAC	4 cut(s)	38, 63, 183, 465
FatI	CATG	1 cut(s)	165
FblI	GTMKAC	1 cut(s)	333
Fnu4HI	GCNGC	9 cut(s)	85, 88, 106, 109, 112, 115, 118, 153, 764
FriOI	GRGCYC	2 cut(s)	361, 818
Fsp4HI	GCNGC	9 cut(s)	85, 88, 106, 109, 112, 115, 118, 153, 764
FspBI	CTAG	2 cut(s)	173, 591
GluI	GCNGC	9 cut(s)	85, 88, 106, 109, 112, 115, 118, 153, 764
GsaI	CCCAGC	1 cut(s)	84
HaeIII	GGCC	6 cut(s)	45, 59, 96, 129, 372, 414
HapII	CCGG	2 cut(s)	56, 440
HgaI	GACGC	1 cut(s)	242
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	1 cut(s)	169
HindIII	AAGCTT	1 cut(s)	750
HinfI	GANTC	2 cut(s)	547, 567
HpaII	CCGG	2 cut(s)	56, 440
HphI	GGTGA	3 cut(s)	220, 235, 292
Hpy166II	GTNNAC	2 cut(s)	334, 517
Hpy188I	TCNGA	3 cut(s)	654, 741, 759
Hpy188III	TCNNGA	2 cut(s)	571, 778
Hpy8I	GTNNAC	2 cut(s)	334, 517
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	3 cut(s)	187, 604, 799
HpyCH4III	ACNGT	2 cut(s)	77, 388
HpyCH4IV	ACGT	2 cut(s)	225, 429
HpyCH4V	TGCA	4 cut(s)	114, 120, 277, 509
HpyF10VI	GCNNNNNNNGC	6 cut(s)	93, 102, 111, 114, 117, 126
HpyF3I	CTNAG	2 cut(s)	49, 744
HpySE526I	ACGT	2 cut(s)	225, 429
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	1 cut(s)	169
KspI	CCGCGG	1 cut(s)	88
Kzo9I	GATC	2 cut(s)	324, 470
Lsp1109I	GCAGC	7 cut(s)	92, 95, 98, 104, 126, 164, 775
LweI	GCATC	1 cut(s)	129
MaeI	CTAG	2 cut(s)	173, 591
MaeII	ACGT	2 cut(s)	225, 429
MaeIII	GTNAC	3 cut(s)	226, 388, 602
MalI	GATC	2 cut(s)	326, 472
MboI	GATC	2 cut(s)	324, 470
MboII	GAAGA	8 cut(s)	26, 115, 127, 139, 154, 178, 334, 805
MfeI	CAATTG	1 cut(s)	458
MflI	RGATCY	1 cut(s)	470
MhlI	GDGCHC	2 cut(s)	361, 818
MluCI	AATT	5 cut(s)	248, 458, 594, 634, 661
MmeI	TCCRAC	2 cut(s)	448, 498
MseI	TTAA	2 cut(s)	26, 492
MspA1I	CMGCKG	2 cut(s)	87, 117
MspI	CCGG	2 cut(s)	56, 440
MspR9I	CCNGG	3 cut(s)	56, 440, 819
MunI	CAATTG	1 cut(s)	458
MvaI	CCWGG	1 cut(s)	819
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	6 cut(s)	93, 102, 111, 114, 117, 126
NciI	CCSGG	2 cut(s)	56, 440
NdeII	GATC	2 cut(s)	324, 470
NlaIII	CATG	1 cut(s)	169
NlaIV	GGNNCC	4 cut(s)	46, 97, 472, 615
NmeAIII	GCCGAG	1 cut(s)	81
NmuCI	GTSAC	3 cut(s)	226, 388, 602
NspV	TTCGAA	1 cut(s)	307
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PfeI	GAWTC	2 cut(s)	547, 567
PkrI	GCNGC	9 cut(s)	86, 89, 107, 110, 113, 116, 119, 154, 765
Psp124BI	GAGCTC	1 cut(s)	361
Psp1406I	AACGTT	1 cut(s)	429
Psp6I	CCWGG	1 cut(s)	817
PspFI	CCCAGC	1 cut(s)	80
PspGI	CCWGG	1 cut(s)	817
PspN4I	GGNNCC	4 cut(s)	46, 97, 472, 615
PspPI	GGNCC	3 cut(s)	44, 95, 370
PstI	CTGCAG	1 cut(s)	116
PsuI	RGATCY	1 cut(s)	470
PvuII	CAGCTG	1 cut(s)	117
RsaI	GTAC	2 cut(s)	385, 646
RsaNI	GTAC	2 cut(s)	384, 645
SacI	GAGCTC	1 cut(s)	361
SacII	CCGCGG	1 cut(s)	88
SaqAI	TTAA	2 cut(s)	26, 492
SatI	GCNGC	9 cut(s)	85, 88, 106, 109, 112, 115, 118, 153, 764
Sau3AI	GATC	2 cut(s)	324, 470
Sau96I	GGNCC	3 cut(s)	44, 95, 370
ScaI	AGTACT	1 cut(s)	646
ScrFI	CCNGG	3 cut(s)	56, 440, 819
SduI	GDGCHC	2 cut(s)	361, 818
SfaNI	GCATC	1 cut(s)	129
SfcI	CTRYAG	1 cut(s)	112
Sfr303I	CCGCGG	1 cut(s)	88
SfuI	TTCGAA	1 cut(s)	307
SgrBI	CCGCGG	1 cut(s)	88
SmlI	CTYRAG	3 cut(s)	482, 684, 778
SmoI	CTYRAG	3 cut(s)	482, 684, 778
Sse9I	AATT	5 cut(s)	248, 458, 594, 634, 661
SsiI	CCGC	6 cut(s)	85, 87, 90, 202, 343, 680
SspMI	CTAG	2 cut(s)	173, 591
SstI	GAGCTC	1 cut(s)	361
StyD4I	CCNGG	3 cut(s)	54, 438, 817
StyI	CCWWGG	1 cut(s)	409
TaaI	ACNGT	2 cut(s)	77, 388
TaiI	ACGT	2 cut(s)	228, 432
TaqI	TCGA	1 cut(s)	307
TasI	AATT	5 cut(s)	248, 458, 594, 634, 661
TatI	WGTACW	1 cut(s)	644
TauI	GCSGC	2 cut(s)	87, 90
TfiI	GAWTC	2 cut(s)	547, 567
Tru1I	TTAA	2 cut(s)	26, 492
Tru9I	TTAA	2 cut(s)	26, 492
TseFI	GTSAC	3 cut(s)	226, 388, 602
TseI	GCWGC	7 cut(s)	105, 108, 111, 114, 117, 152, 763
Tsp45I	GTSAC	3 cut(s)	226, 388, 602
TspDTI	ATGAA	2 cut(s)	154, 545
TspGWI	ACGGA	2 cut(s)	671, 817
XapI	RAATTY	2 cut(s)	634, 661
XmiI	GTMKAC	1 cut(s)	333
XspI	CTAG	2 cut(s)	173, 591
ZrmI	AGTACT	1 cut(s)	646

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.