Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0001177

Physical Location & Seq

Genomic Coordinates Reverse (-)

30283106 .. 30283678

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G357300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGAACCTATGGGCCACCATCACCCTTGTCACCTTTACTGCCTATGCATTGTGTATCGTTATTTCTTTATACAATCATCCCCTTATCCCCAACTCTGTTGTAACTCGTGCCTCGCTCACTGAGTTCAGCGTCACCAACAACACCACCCTCCACTATAATCTTGCTCTCAATATTTCCCTGCGAAACCCTAACAAATATTACCGCACCTATTACGATAATATTGAACTCACGGCTTCTTACAAGAACCAGGCATTCCGTACGGTGAATTTGAACTCCTTCTACCAAGGTGTTAAAAATACTACTGTTTTGACACTCTCGTTCAAAGGGCACCAACATGGCTTAGTGAATCTTTCCAATGTTACATTTACTGCCGGAACTCATTACCATATTGATGTCAAGCTCTATCTTCAAAACGTCTACTTGGTGTCACCTAGGACTACTTGGTTTATGGGTTCTCCGCAATCGCGGTCAGAGTTTACATGTCACTTGCAGGTTCCTTTGGTCAATTACATTGATGGTCAAGCCTCCAACATCACTACCAAGTGTGATTCCGATTTCAATTTTTTCTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

191

Amino Acids

21.7

Weight (kDa)

8.96

Isoelectric Point (pI)

46.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35460 AT2G35980 AT3G11650 AT5G06320
fragaria_vesca	FvH4_6g20130 FvH4_6g20140
malus_domestica	MD12G1038600.v1.1 MD14G1037300.v1.1
prunus_persica	Prupe.6G357300_v2.0.a1 Prupe.7G097200_v2.0.a1
pyrus_communis	pycom14g03260
rosa_chinensis	RchiOBHm_Chr3g0475591 RchiOBHm_Chr3g0475631 RchiOBHm_Chr3g0475641 RchiOBHm_Chr3g0475651 RchiOBHm_Chr3g0475661
rosa_laevigata	RLG00000023825 RLG00000023826 RLG00000023827 RLG00000023828 RLG00000023830
rosa_multiflora	Rmu_co8195028.1_g000001 Rmu_sc0000539.1_g000033 Rmu_sc0000539.1_g000043 Rmu_sc0000539.1_g000048 Rmu_sc0000539.1_g000055
rosa_roxburghii	Rroxscaffold_6G00406030 Rroxscaffold_6G00406040 Rroxscaffold_6G00406070 Rroxscaffold_6G00406080 Rroxscaffold_6G00406100 Rroxscaffold_6G00406110
rosa_rugosa	Rorug03G0150500 Rorug03G0150500 Rorug03G0150600 Rorug03G0150700 Rorug03G0150800 Rorug03G0150800
rosa_samantha	Rh3AG200100 Rh3AG200200 Rh3AG200300 Rh3BG230500 Rh3BG230600 Rh3BG230700 Rh3CG224800 Rh3CG225000 Rh3CG225100 Rh3CG225200 Rh3CG225300 Rh3DG225600 Rh3DG225700 Rh3DG225800
rosa_wichuraiana	Rw3G018150 Rw3G018170 Rw3G018180 Rw3G018190 Rw3G018200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	481
AccB1I	GGYRCC	1 cut(s)	327
AccI	GTMKAC	1 cut(s)	417
AccII	CGCG	1 cut(s)	466
AciI	CCGC	3 cut(s)	202, 458, 466
AcsI	RAATTY	1 cut(s)	265
AfaI	GTAC	1 cut(s)	259
AflIII	ACRYGT	1 cut(s)	479
AgsI	TTSAA	5 cut(s)	224, 271, 322, 410, 559
AjnI	CCWGG	1 cut(s)	246
AluBI	AGCT	1 cut(s)	400
AluI	AGCT	1 cut(s)	400
AoxI	GGCC	1 cut(s)	12
ApoI	RAATTY	1 cut(s)	265
Asp700I	GAANNNNTTC	1 cut(s)	275
AspA2I	CCTAGG	1 cut(s)	431
AspS9I	GGNCC	1 cut(s)	12
AsuHPI	GGTGA	5 cut(s)	13, 22, 124, 274, 420
AvrII	CCTAGG	1 cut(s)	431
BaeGI	GKGCMC	1 cut(s)	330
BanI	GGYRCC	1 cut(s)	327
BauI	CACGAG	1 cut(s)	105
BccI	CCATC	2 cut(s)	26, 509
BceAI	ACGGC	1 cut(s)	246
BciT130I	CCWGG	1 cut(s)	248
BfaI	CTAG	1 cut(s)	432
BfuAI	ACCTGC	1 cut(s)	481
BlnI	CCTAGG	1 cut(s)	431
Bme1390I	CCNGG	1 cut(s)	248
BmgT120I	GGNCC	1 cut(s)	12
BmiI	GGNNCC	2 cut(s)	329, 495
BmrFI	CCNGG	1 cut(s)	248
BsaJI	CCNNGG	2 cut(s)	283, 431
BseBI	CCWGG	1 cut(s)	248
BseDI	CCNNGG	2 cut(s)	283, 431
BseGI	GGATG	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	111
BseSI	GKGCMC	1 cut(s)	330
Bsh1236I	CGCG	1 cut(s)	466
BshFI	GGCC	1 cut(s)	14
BshNI	GGYRCC	1 cut(s)	327
BsiSI	CCGG	1 cut(s)	372
BsiWI	CGTACG	1 cut(s)	257
BsmI	GAATGC	1 cut(s)	251
BsnI	GGCC	1 cut(s)	14
Bsp1286I	GDGCHC	1 cut(s)	330
BspACI	CCGC	3 cut(s)	202, 458, 466
BspANI	GGCC	1 cut(s)	14
BspCNI	CTCAG	1 cut(s)	112
BspFNI	CGCG	1 cut(s)	466
BspLI	GGNNCC	2 cut(s)	329, 495
BspMI	ACCTGC	1 cut(s)	481
BspT107I	GGYRCC	1 cut(s)	327
BssECI	CCNNGG	2 cut(s)	283, 431
BssSI	CACGAG	1 cut(s)	105
BssT1I	CCWWGG	2 cut(s)	283, 431
Bst2BI	CACGAG	1 cut(s)	105
Bst2UI	CCWGG	1 cut(s)	248
Bst4CI	ACNGT	2 cut(s)	262, 304
BstDEI	CTNAG	2 cut(s)	120, 340
BstF5I	GGATG	1 cut(s)	76
BstFNI	CGCG	1 cut(s)	466
BstNI	CCWGG	1 cut(s)	248
BstNSI	RCATGY	1 cut(s)	483
BstSCI	CCNGG	1 cut(s)	246
BstSLI	GKGCMC	1 cut(s)	330
BstUI	CGCG	1 cut(s)	466
BsuRI	GGCC	1 cut(s)	14
BtsCI	GGATG	1 cut(s)	76
BtsIMutI	CAGTG	1 cut(s)	117
BveI	ACCTGC	1 cut(s)	481
Cfr13I	GGNCC	1 cut(s)	12
CseI	GACGC	1 cut(s)	118
Csp6I	GTAC	1 cut(s)	258
CviAII	CATG	2 cut(s)	335, 480
CviJI	RGCY	5 cut(s)	14, 233, 339, 400, 524
CviKI_1	RGCY	5 cut(s)	14, 233, 339, 400, 524
CviQI	GTAC	1 cut(s)	258
DdeI	CTNAG	2 cut(s)	120, 340
Eco130I	CCWWGG	2 cut(s)	283, 431
EcoRII	CCWGG	1 cut(s)	246
EcoT14I	CCWWGG	2 cut(s)	283, 431
EcoT22I	ATGCAT	1 cut(s)	49
ErhI	CCWWGG	2 cut(s)	283, 431
FaeI	CATG	2 cut(s)	338, 483
FaiI	YATR	9 cut(s)	10, 45, 70, 156, 336, 387, 449, 481, 571
FatI	CATG	2 cut(s)	334, 479
FblI	GTMKAC	1 cut(s)	417
FokI	GGATG	1 cut(s)	63
FspBI	CTAG	1 cut(s)	432
HaeIII	GGCC	1 cut(s)	14
HapII	CCGG	1 cut(s)	372
HgaI	GACGC	1 cut(s)	118
Hin1II	CATG	2 cut(s)	338, 483
HinfI	GANTC	2 cut(s)	346, 548
HpaII	CCGG	1 cut(s)	372
HphI	GGTGA	5 cut(s)	13, 22, 124, 274, 420
Hpy166II	GTNNAC	2 cut(s)	418, 477
Hpy188I	TCNGA	2 cut(s)	472, 553
Hpy8I	GTNNAC	2 cut(s)	418, 477
HpyAV	CCTTC	1 cut(s)	286
HpyCH4III	ACNGT	2 cut(s)	262, 304
HpyCH4IV	ACGT	1 cut(s)	414
HpyCH4V	TGCA	2 cut(s)	47, 490
HpyF3I	CTNAG	2 cut(s)	120, 340
HpySE526I	ACGT	1 cut(s)	414
Hsp92II	CATG	2 cut(s)	338, 483
LpnPI	CCDG	5 cut(s)	191, 233, 260, 385, 476
MaeI	CTAG	1 cut(s)	432
MaeII	ACGT	1 cut(s)	414
MaeIII	GTNAC	6 cut(s)	28, 100, 130, 358, 426, 482
MboII	GAAGA	1 cut(s)	398
MhlI	GDGCHC	1 cut(s)	330
MluCI	AATT	3 cut(s)	265, 505, 559
MmeI	TCCRAC	1 cut(s)	552
MnlI	CCTC	3 cut(s)	121, 158, 535
Mph1103I	ATGCAT	1 cut(s)	49
MroXI	GAANNNNTTC	1 cut(s)	275
MseI	TTAA	1 cut(s)	291
MslI	CAYNNNNRTG	2 cut(s)	333, 390
MspI	CCGG	1 cut(s)	372
MspR9I	CCNGG	1 cut(s)	248
Mva1269I	GAATGC	1 cut(s)	251
MvaI	CCWGG	1 cut(s)	248
MvnI	CGCG	1 cut(s)	466
NlaIII	CATG	2 cut(s)	338, 483
NlaIV	GGNNCC	2 cut(s)	329, 495
NmuCI	GTSAC	4 cut(s)	28, 130, 426, 482
NsiI	ATGCAT	1 cut(s)	49
NspI	RCATGY	1 cut(s)	483
PciI	ACATGT	1 cut(s)	479
PctI	GAATGC	1 cut(s)	251
PdmI	GAANNNNTTC	1 cut(s)	275
PfeI	GAWTC	2 cut(s)	346, 548
Pfl23II	CGTACG	1 cut(s)	257
PscI	ACATGT	1 cut(s)	479
Psp6I	CCWGG	1 cut(s)	246
PspGI	CCWGG	1 cut(s)	246
PspLI	CGTACG	1 cut(s)	257
PspN4I	GGNNCC	2 cut(s)	329, 495
PspPI	GGNCC	1 cut(s)	12
PsrI	GAACNNNNNNTAC	2 cut(s)	263, 295
RsaI	GTAC	1 cut(s)	259
RsaNI	GTAC	1 cut(s)	258
RseI	CAYNNNNRTG	2 cut(s)	333, 390
SaqAI	TTAA	1 cut(s)	291
Sau96I	GGNCC	1 cut(s)	12
ScrFI	CCNGG	1 cut(s)	248
SduI	GDGCHC	1 cut(s)	330
SetI	ASST	8 cut(s)	9, 35, 209, 289, 402, 417, 433, 495
SmiMI	CAYNNNNRTG	2 cut(s)	333, 390
Sse9I	AATT	3 cut(s)	265, 505, 559
SsiI	CCGC	3 cut(s)	202, 458, 466
SspI	AATATT	3 cut(s)	172, 197, 220
SspMI	CTAG	1 cut(s)	432
StyD4I	CCNGG	1 cut(s)	246
StyI	CCWWGG	2 cut(s)	283, 431
TaaI	ACNGT	2 cut(s)	262, 304
TaiI	ACGT	1 cut(s)	417
TasI	AATT	3 cut(s)	265, 505, 559
TfiI	GAWTC	2 cut(s)	346, 548
Tru1I	TTAA	1 cut(s)	291
Tru9I	TTAA	1 cut(s)	291
TscAI	CASTG	1 cut(s)	124
TseFI	GTSAC	4 cut(s)	28, 130, 426, 482
Tsp45I	GTSAC	4 cut(s)	28, 130, 426, 482
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	245
TspRI	CASTG	1 cut(s)	124
XapI	RAATTY	1 cut(s)	265
XceI	RCATGY	1 cut(s)	483
XmaJI	CCTAGG	1 cut(s)	431
XmiI	GTMKAC	1 cut(s)	417
XmnI	GAANNNNTTC	1 cut(s)	275
XspI	CTAG	1 cut(s)	432
Zsp2I	ATGCAT	1 cut(s)	49

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.