Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8195028.1

Orthogroup ID

OG0001177

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 534

Gene Structure 533 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8195028.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 533 bp

atgtcagagaaacaagcccacttgaatggagcctactacggcccatccgtcccgccacgagagacctaccaccgccccggccgcggtggaggtctcctcagctgctgctgcagctgcatcttcagtctcgtcttcaagctcatcttcgccgcagttgtcttcttgggcttagccttcctcgtcttctggctcatagtcaggccaaccggagtcaagttccacgtcacggatgccaccctcacccagttcaacttctcctccgacaacaacctccactacaatctcgctgccaacctcaccatccgaaaccccaacaagaagatcggcatctactacgatcgcatcgaagccagagccctgtacgaggggcaaaggttcagtacggttactctcacgccgttttaccaaggccataaaactacaaacgttctgaacccggtgtttcagggacaacaattgattgttggatccaacttgcttgaggagtttaatcaacagaagagtgcaggggtttacgagattgagatgaagct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

178

Amino Acids

20.03

Weight (kDa)

9.08

Isoelectric Point (pI)

36.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35460 AT2G35980 AT3G11650 AT5G06320
fragaria_vesca	FvH4_6g20130 FvH4_6g20140
malus_domestica	MD12G1038600.v1.1 MD14G1037300.v1.1
prunus_persica	Prupe.6G357300_v2.0.a1 Prupe.7G097200_v2.0.a1
pyrus_communis	pycom14g03260
rosa_chinensis	RchiOBHm_Chr3g0475591 RchiOBHm_Chr3g0475631 RchiOBHm_Chr3g0475641 RchiOBHm_Chr3g0475651 RchiOBHm_Chr3g0475661
rosa_laevigata	RLG00000023825 RLG00000023826 RLG00000023827 RLG00000023828 RLG00000023830
rosa_multiflora	Rmu_co8195028.1_g000001 Rmu_sc0000539.1_g000033 Rmu_sc0000539.1_g000043 Rmu_sc0000539.1_g000048 Rmu_sc0000539.1_g000055
rosa_roxburghii	Rroxscaffold_6G00406030 Rroxscaffold_6G00406040 Rroxscaffold_6G00406070 Rroxscaffold_6G00406080 Rroxscaffold_6G00406100 Rroxscaffold_6G00406110
rosa_rugosa	Rorug03G0150500 Rorug03G0150500 Rorug03G0150600 Rorug03G0150700 Rorug03G0150800 Rorug03G0150800
rosa_samantha	Rh3AG200100 Rh3AG200200 Rh3AG200300 Rh3BG230500 Rh3BG230600 Rh3BG230700 Rh3CG224800 Rh3CG225000 Rh3CG225100 Rh3CG225200 Rh3CG225300 Rh3DG225600 Rh3DG225700 Rh3DG225800
rosa_wichuraiana	Rw3G018150 Rw3G018170 Rw3G018180 Rw3G018190 Rw3G018200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	84
AciI	CCGC	5 cut(s)	53, 73, 82, 84, 150
AclI	AACGTT	1 cut(s)	426
AclWI	GGATC	2 cut(s)	462, 475
AcoI	YGGCCR	1 cut(s)	79
AcuI	CTGAAG	1 cut(s)	106
AfaI	GTAC	2 cut(s)	362, 382
AfiI	CCNNNNNNNGG	3 cut(s)	83, 226, 364
AgsI	TTSAA	3 cut(s)	25, 136, 250
AjiI	CACGTC	1 cut(s)	223
AluBI	AGCT	4 cut(s)	102, 114, 139, 532
AluI	AGCT	4 cut(s)	102, 114, 139, 532
Alw26I	GTCTC	3 cut(s)	56, 98, 131
AlwI	GGATC	2 cut(s)	462, 475
AlwNI	CAGNNNCTG	1 cut(s)	105
AoxI	GGCC	4 cut(s)	40, 79, 200, 409
ApeKI	GCWGC	6 cut(s)	102, 105, 108, 111, 114, 287
AspS9I	GGNCC	1 cut(s)	41
AsuC2I	CCSGG	2 cut(s)	78, 437
AsuHPI	GGTGA	2 cut(s)	232, 289
BamHI	GGATCC	1 cut(s)	467
BanII	GRGCYC	1 cut(s)	358
BauI	CACGAG	1 cut(s)	57
BbsI	GAAGAC	3 cut(s)	124, 151, 175
BbvCI	CCTCAGC	1 cut(s)	98
BbvI	GCAGC	6 cut(s)	89, 92, 95, 101, 123, 274
BccI	CCATC	2 cut(s)	52, 308
BceAI	ACGGC	2 cut(s)	55, 382
BcnI	CCSGG	2 cut(s)	78, 437
BcoDI	GTCTC	3 cut(s)	56, 98, 131
BfmI	CTRYAG	1 cut(s)	109
BisI	GCNGC	8 cut(s)	82, 103, 106, 109, 112, 115, 150, 288
BlpI	GCTNAGC	1 cut(s)	169
BlsI	GCNGC	8 cut(s)	83, 104, 107, 110, 113, 116, 151, 289
Bme1390I	CCNGG	2 cut(s)	78, 437
BmgBI	CACGTC	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	41
BmiI	GGNNCC	2 cut(s)	31, 469
BmrFI	CCNGG	2 cut(s)	78, 437
BmrI	ACTGGG	1 cut(s)	238
BmsI	GCATC	4 cut(s)	126, 220, 336, 351
BmuI	ACTGGG	1 cut(s)	238
BpiI	GAAGAC	3 cut(s)	124, 151, 175
BplI	GAGNNNNNCTC	2 cut(s)	81, 113
Bpu10I	CCTNAGC	1 cut(s)	98
Bpu1102I	GCTNAGC	1 cut(s)	169
BpuEI	CTTGAG	1 cut(s)	500
BpuMI	CCSGG	2 cut(s)	78, 437
BsaBI	GATNNNNATC	1 cut(s)	326
BsaI	GGTCTC	2 cut(s)	56, 98
BsaJI	CCNNGG	3 cut(s)	76, 82, 406
BsaWI	WCCGGW	1 cut(s)	206
BsaXI	ACNNNNNCTCC	2 cut(s)	242, 272
Bsc4I	CCNNNNNNNGG	3 cut(s)	83, 226, 364
Bse1I	ACTGG	1 cut(s)	244
Bse8I	GATNNNNATC	1 cut(s)	326
BseDI	CCNNGG	3 cut(s)	76, 82, 406
BseGI	GGATG	3 cut(s)	44, 235, 300
BseJI	GATNNNNATC	1 cut(s)	326
BseLI	CCNNNNNNNGG	3 cut(s)	83, 226, 364
BseMII	CTCAG	1 cut(s)	112
BseNI	ACTGG	1 cut(s)	244
BseRI	GAGGAG	3 cut(s)	86, 247, 497
BseX3I	CGGCCG	1 cut(s)	79
BseXI	GCAGC	6 cut(s)	89, 92, 95, 101, 123, 274
BsgI	GTGCAG	1 cut(s)	525
Bsh1236I	CGCG	1 cut(s)	84
Bsh1285I	CGRYCG	2 cut(s)	82, 340
BshFI	GGCC	4 cut(s)	42, 81, 202, 411
BsiEI	CGRYCG	2 cut(s)	82, 340
BsiSI	CCGG	3 cut(s)	78, 207, 437
BslFI	GGGAC	2 cut(s)	35, 462
BslI	CCNNNNNNNGG	3 cut(s)	83, 226, 364
BsmAI	GTCTC	3 cut(s)	56, 98, 131
BsmFI	GGGAC	2 cut(s)	35, 462
BsnI	GGCC	4 cut(s)	42, 81, 202, 411
Bso31I	GGTCTC	2 cut(s)	56, 98
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp143I	GATC	3 cut(s)	321, 337, 467
Bsp1720I	GCTNAGC	1 cut(s)	169
BspACI	CCGC	5 cut(s)	53, 73, 82, 84, 150
BspANI	GGCC	4 cut(s)	42, 81, 202, 411
BspCNI	CTCAG	1 cut(s)	111
BspFNI	CGCG	1 cut(s)	84
BspLI	GGNNCC	2 cut(s)	31, 469
BspMAI	CTGCAG	1 cut(s)	113
BspPI	GGATC	2 cut(s)	462, 475
BspTNI	GGTCTC	2 cut(s)	56, 98
BsrI	ACTGG	1 cut(s)	244
BssECI	CCNNGG	3 cut(s)	76, 82, 406
BssMI	GATC	3 cut(s)	321, 337, 467
BssSI	CACGAG	1 cut(s)	57
BssT1I	CCWWGG	1 cut(s)	406
Bst2BI	CACGAG	1 cut(s)	57
Bst4CI	ACNGT	1 cut(s)	385
Bst6I	CTCTTC	1 cut(s)	494
BstDEI	CTNAG	2 cut(s)	98, 169
BstDSI	CCRYGG	1 cut(s)	82
BstENI	CCTNNNNNAGG	1 cut(s)	362
BstF5I	GGATG	3 cut(s)	44, 235, 300
BstFNI	CGCG	1 cut(s)	84
BstKTI	GATC	3 cut(s)	324, 340, 470
BstMAI	GTCTC	3 cut(s)	56, 98, 131
BstMBI	GATC	3 cut(s)	321, 337, 467
BstMCI	CGRYCG	2 cut(s)	82, 340
BstMWI	GCNNNNNNNGC	4 cut(s)	81, 108, 111, 114
BstSCI	CCNGG	2 cut(s)	76, 435
BstSFI	CTRYAG	1 cut(s)	109
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	6 cut(s)	89, 92, 95, 101, 123, 274
BstV2I	GAAGAC	3 cut(s)	124, 151, 175
BstX2I	RGATCY	1 cut(s)	467
BstXI	CCANNNNNNTGG	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	467
BstZI	CGGCCG	1 cut(s)	79
BsuRI	GGCC	4 cut(s)	42, 81, 202, 411
BtgI	CCRYGG	1 cut(s)	82
BtrI	CACGTC	1 cut(s)	223
BtsCI	GGATG	3 cut(s)	44, 235, 300
CaiI	CAGNNNCTG	1 cut(s)	105
Cfr13I	GGNCC	1 cut(s)	41
Cfr42I	CCGCGG	1 cut(s)	85
Csp6I	GTAC	2 cut(s)	361, 381
CviQI	GTAC	2 cut(s)	361, 381
DdeI	CTNAG	2 cut(s)	98, 169
DpnI	GATC	3 cut(s)	323, 339, 469
DpnII	GATC	3 cut(s)	321, 337, 467
EaeI	YGGCCR	1 cut(s)	79
EagI	CGGCCG	1 cut(s)	79
Eam1104I	CTCTTC	1 cut(s)	494
EarI	CTCTTC	1 cut(s)	494
EclXI	CGGCCG	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	406
Eco24I	GRGCYC	1 cut(s)	358
Eco31I	GGTCTC	2 cut(s)	56, 98
Eco52I	CGGCCG	1 cut(s)	79
Eco57I	CTGAAG	1 cut(s)	106
EcoNI	CCTNNNNNAGG	1 cut(s)	362
EcoT14I	CCWWGG	1 cut(s)	406
EcoT38I	GRGCYC	1 cut(s)	358
ErhI	CCWWGG	1 cut(s)	406
FaiI	YATR	2 cut(s)	194, 414
FalI	AAGNNNNNCTT	2 cut(s)	128, 160
FaqI	GGGAC	2 cut(s)	35, 462
FauI	CCCGC	1 cut(s)	60
Fnu4HI	GCNGC	8 cut(s)	82, 103, 106, 109, 112, 115, 150, 288
FokI	GGATG	3 cut(s)	31, 242, 287
FriOI	GRGCYC	1 cut(s)	358
Fsp4HI	GCNGC	8 cut(s)	82, 103, 106, 109, 112, 115, 150, 288
GluI	GCNGC	8 cut(s)	82, 103, 106, 109, 112, 115, 150, 288
HaeIII	GGCC	4 cut(s)	42, 81, 202, 411
HapII	CCGG	3 cut(s)	78, 207, 437
HinfI	GANTC	1 cut(s)	210
HpaII	CCGG	3 cut(s)	78, 207, 437
HphI	GGTGA	2 cut(s)	232, 289
Hpy166II	GTNNAC	1 cut(s)	514
Hpy188I	TCNGA	4 cut(s)	7, 262, 305, 432
Hpy8I	GTNNAC	1 cut(s)	514
HpyAV	CCTTC	1 cut(s)	184
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4IV	ACGT	2 cut(s)	222, 426
HpyCH4V	TGCA	3 cut(s)	111, 117, 506
HpyF10VI	GCNNNNNNNGC	4 cut(s)	81, 108, 111, 114
HpyF3I	CTNAG	2 cut(s)	98, 169
HpySE526I	ACGT	2 cut(s)	222, 426
KspI	CCGCGG	1 cut(s)	85
Kzo9I	GATC	3 cut(s)	321, 337, 467
LmnI	GCTCC	1 cut(s)	29
Lsp1109I	GCAGC	6 cut(s)	89, 92, 95, 101, 123, 274
LweI	GCATC	4 cut(s)	126, 220, 336, 351
MaeII	ACGT	2 cut(s)	222, 426
MaeIII	GTNAC	2 cut(s)	223, 385
MalI	GATC	3 cut(s)	323, 339, 469
MboI	GATC	3 cut(s)	321, 337, 467
MboII	GAAGA	7 cut(s)	112, 124, 136, 151, 175, 331, 511
MfeI	CAATTG	1 cut(s)	455
MflI	RGATCY	1 cut(s)	467
MhlI	GDGCHC	1 cut(s)	358
MluCI	AATT	1 cut(s)	455
MlyI	GAGTC	1 cut(s)	219
MmeI	TCCRAC	3 cut(s)	285, 445, 495
MnlI	CCTC	9 cut(s)	83, 107, 188, 248, 268, 281, 305, 358, 475
MseI	TTAA	1 cut(s)	489
MslI	CAYNNNNRTG	1 cut(s)	24
MspA1I	CMGCKG	3 cut(s)	84, 102, 114
MspI	CCGG	3 cut(s)	78, 207, 437
MspR9I	CCNGG	2 cut(s)	78, 437
MunI	CAATTG	1 cut(s)	455
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	4 cut(s)	81, 108, 111, 114
NciI	CCSGG	2 cut(s)	78, 437
NdeII	GATC	3 cut(s)	321, 337, 467
NlaIV	GGNNCC	2 cut(s)	31, 469
NmuCI	GTSAC	1 cut(s)	223
PcsI	WCGNNNNNNNCGW	2 cut(s)	45, 342
PkrI	GCNGC	8 cut(s)	83, 104, 107, 110, 113, 116, 151, 289
Ple19I	CGATCG	1 cut(s)	340
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
Psp1406I	AACGTT	1 cut(s)	426
PspN4I	GGNNCC	2 cut(s)	31, 469
PspPI	GGNCC	1 cut(s)	41
PstI	CTGCAG	1 cut(s)	113
PstNI	CAGNNNCTG	1 cut(s)	105
PsuI	RGATCY	1 cut(s)	467
PvuI	CGATCG	1 cut(s)	340
PvuII	CAGCTG	2 cut(s)	102, 114
RsaI	GTAC	2 cut(s)	362, 382
RsaNI	GTAC	2 cut(s)	361, 381
RseI	CAYNNNNRTG	1 cut(s)	24
SacII	CCGCGG	1 cut(s)	85
SaqAI	TTAA	1 cut(s)	489
SatI	GCNGC	8 cut(s)	82, 103, 106, 109, 112, 115, 150, 288
Sau3AI	GATC	3 cut(s)	321, 337, 467
Sau96I	GGNCC	1 cut(s)	41
SchI	GAGTC	1 cut(s)	219
ScrFI	CCNGG	2 cut(s)	78, 437
SduI	GDGCHC	1 cut(s)	358
SfaNI	GCATC	4 cut(s)	126, 220, 336, 351
SfcI	CTRYAG	1 cut(s)	109
Sfr303I	CCGCGG	1 cut(s)	85
SgrBI	CCGCGG	1 cut(s)	85
SmiMI	CAYNNNNRTG	1 cut(s)	24
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
Sse9I	AATT	1 cut(s)	455
SsiI	CCGC	5 cut(s)	53, 73, 82, 84, 150
StyD4I	CCNGG	2 cut(s)	76, 435
StyI	CCWWGG	1 cut(s)	406
TaaI	ACNGT	1 cut(s)	385
TaiI	ACGT	2 cut(s)	225, 429
TaqI	TCGA	1 cut(s)	345
TasI	AATT	1 cut(s)	455
TauI	GCSGC	2 cut(s)	84, 152
Tru1I	TTAA	1 cut(s)	489
Tru9I	TTAA	1 cut(s)	489
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	6 cut(s)	102, 105, 108, 111, 114, 287
Tsp45I	GTSAC	1 cut(s)	223
TspGWI	ACGGA	2 cut(s)	37, 242
XagI	CCTNNNNNAGG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.