Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000539.1

Orthogroup ID

OG0001177

Physical Location & Seq

Genomic Coordinates Reverse (-)

226237 .. 226920

Gene Structure 684 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000539.1_g000048.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atgtcagagaaacaagcccacttgaatggagcctattatggcccatcaatcccgccgagagagaactaccaccggcccagccgcggcggaggtcccctcagctgctgctgtagctgcatcttcggtctcgtcttcaagctcatcttcgccgcaattgtctttatgggattagccttcctcgtcttctggctcatagtccgccccaccagagtcaagttccacgtaacagaagccactctcacacaattcaacttctccaccgatagcaacctgcactacaatctcgctctcaacctcaccatccgaaaccccaacaagaaaatcggcgtttactatgatcgcatcgaagccagagcactttacgaagaccagaggtttagtacggtcactctgaccccattttaccaaggccaccaaaccacaaacgttttgaacccggtgtttcagggacagcaattgattgttggatccaactttcttgaggagtttaatcaacagaagagtgctggggtttacgagatcgagatgaagctttatctgaggattcggttcaagttgggtagaatcaagaccggaaagttcaagcctagaattgaatgtgacttgaaggttcctttgagtcagaatggaaattcaattagtgcttttcagactgagaaatgctcaattgattacttcaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

227

Amino Acids

26.0

Weight (kDa)

9.39

Isoelectric Point (pI)

34.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35460 AT2G35980 AT3G11650 AT5G06320
fragaria_vesca	FvH4_6g20130 FvH4_6g20140
malus_domestica	MD12G1038600.v1.1 MD14G1037300.v1.1
prunus_persica	Prupe.6G357300_v2.0.a1 Prupe.7G097200_v2.0.a1
pyrus_communis	pycom14g03260
rosa_chinensis	RchiOBHm_Chr3g0475591 RchiOBHm_Chr3g0475631 RchiOBHm_Chr3g0475641 RchiOBHm_Chr3g0475651 RchiOBHm_Chr3g0475661
rosa_laevigata	RLG00000023825 RLG00000023826 RLG00000023827 RLG00000023828 RLG00000023830
rosa_multiflora	Rmu_co8195028.1_g000001 Rmu_sc0000539.1_g000033 Rmu_sc0000539.1_g000043 Rmu_sc0000539.1_g000048 Rmu_sc0000539.1_g000055
rosa_roxburghii	Rroxscaffold_6G00406030 Rroxscaffold_6G00406040 Rroxscaffold_6G00406070 Rroxscaffold_6G00406080 Rroxscaffold_6G00406100 Rroxscaffold_6G00406110
rosa_rugosa	Rorug03G0150500 Rorug03G0150500 Rorug03G0150600 Rorug03G0150700 Rorug03G0150800 Rorug03G0150800
rosa_samantha	Rh3AG200100 Rh3AG200200 Rh3AG200300 Rh3BG230500 Rh3BG230600 Rh3BG230700 Rh3CG224800 Rh3CG225000 Rh3CG225100 Rh3CG225200 Rh3CG225300 Rh3DG225600 Rh3DG225700 Rh3DG225800
rosa_wichuraiana	Rw3G018150 Rw3G018170 Rw3G018180 Rw3G018190 Rw3G018200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	279
AccII	CGCG	1 cut(s)	84
AciI	CCGC	6 cut(s)	53, 82, 84, 87, 150, 199
AclI	AACGTT	1 cut(s)	426
AclWI	GGATC	2 cut(s)	462, 475
AcsI	RAATTY	1 cut(s)	631
AfaI	GTAC	1 cut(s)	382
AfiI	CCNNNNNNNGG	1 cut(s)	83
AluBI	AGCT	4 cut(s)	102, 114, 139, 532
AluI	AGCT	4 cut(s)	102, 114, 139, 532
Alw21I	GWGCWC	1 cut(s)	358
Alw26I	GTCTC	1 cut(s)	131
AlwI	GGATC	2 cut(s)	462, 475
AlwNI	CAGNNNCTG	1 cut(s)	105
AoxI	GGCC	3 cut(s)	40, 74, 409
ApeKI	GCWGC	3 cut(s)	102, 105, 114
ApoI	RAATTY	1 cut(s)	631
AspS9I	GGNCC	3 cut(s)	41, 75, 92
AsuC2I	CCSGG	1 cut(s)	437
AsuHPI	GGTGA	1 cut(s)	289
AvaII	GGWCC	1 cut(s)	92
BamHI	GGATCC	1 cut(s)	467
BbsI	GAAGAC	3 cut(s)	124, 175, 372
Bbv12I	GWGCWC	1 cut(s)	358
BbvCI	CCTCAGC	1 cut(s)	98
BbvI	GCAGC	3 cut(s)	89, 92, 101
BccI	CCATC	2 cut(s)	52, 308
BcnI	CCSGG	1 cut(s)	437
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	1 cut(s)	588
BfmI	CTRYAG	1 cut(s)	109
BfuAI	ACCTGC	1 cut(s)	279
BisI	GCNGC	6 cut(s)	82, 85, 103, 106, 115, 150
BlsI	GCNGC	6 cut(s)	83, 86, 104, 107, 116, 151
Bme1390I	CCNGG	1 cut(s)	437
Bme18I	GGWCC	1 cut(s)	92
BmgT120I	GGNCC	3 cut(s)	41, 75, 92
BmiI	GGNNCC	4 cut(s)	31, 94, 469, 612
BmrFI	CCNGG	1 cut(s)	437
BmsI	GCATC	2 cut(s)	126, 351
BpiI	GAAGAC	3 cut(s)	124, 175, 372
BplI	GAGNNNNNCTC	4 cut(s)	81, 113, 647, 679
Bpu10I	CCTNAGC	1 cut(s)	98
BpuEI	CTTGAG	1 cut(s)	500
BpuMI	CCSGG	1 cut(s)	437
BsaAI	YACGTR	1 cut(s)	223
BsaI	GGTCTC	1 cut(s)	131
BsaJI	CCNNGG	2 cut(s)	82, 406
BsaWI	WCCGGW	1 cut(s)	572
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
Bse118I	RCCGGY	1 cut(s)	72
BseDI	CCNNGG	2 cut(s)	82, 406
BseGI	GGATG	1 cut(s)	300
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMII	CTCAG	3 cut(s)	112, 530, 645
BseRI	GAGGAG	1 cut(s)	497
BseXI	GCAGC	3 cut(s)	89, 92, 101
BseYI	CCCAGC	2 cut(s)	77, 506
BsgI	GTGCAG	1 cut(s)	257
Bsh1236I	CGCG	1 cut(s)	84
BshFI	GGCC	3 cut(s)	42, 76, 411
BsiHKAI	GWGCWC	1 cut(s)	358
BsiSI	CCGG	3 cut(s)	73, 437, 573
BslFI	GGGAC	2 cut(s)	78, 462
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	131
BsmFI	GGGAC	2 cut(s)	78, 462
BsnI	GGCC	3 cut(s)	42, 76, 411
Bso31I	GGTCTC	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp143I	GATC	3 cut(s)	337, 467, 519
BspACI	CCGC	6 cut(s)	53, 82, 84, 87, 150, 199
BspANI	GGCC	3 cut(s)	42, 76, 411
BspCNI	CTCAG	3 cut(s)	111, 531, 646
BspFNI	CGCG	1 cut(s)	84
BspLI	GGNNCC	4 cut(s)	31, 94, 469, 612
BspMI	ACCTGC	1 cut(s)	279
BspPI	GGATC	2 cut(s)	462, 475
BspTNI	GGTCTC	1 cut(s)	131
BsrFI	RCCGGY	1 cut(s)	72
BssAI	RCCGGY	1 cut(s)	72
BssECI	CCNNGG	2 cut(s)	82, 406
BssMI	GATC	3 cut(s)	337, 467, 519
BssT1I	CCWWGG	1 cut(s)	406
Bst4CI	ACNGT	1 cut(s)	385
Bst6I	CTCTTC	1 cut(s)	494
BstBAI	YACGTR	1 cut(s)	223
BstDEI	CTNAG	3 cut(s)	98, 539, 654
BstDSI	CCRYGG	1 cut(s)	82
BstF5I	GGATG	1 cut(s)	300
BstFNI	CGCG	1 cut(s)	84
BstKTI	GATC	3 cut(s)	340, 470, 522
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	3 cut(s)	337, 467, 519
BstMWI	GCNNNNNNNGC	2 cut(s)	111, 114
BstSCI	CCNGG	1 cut(s)	435
BstSFI	CTRYAG	1 cut(s)	109
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	3 cut(s)	89, 92, 101
BstV2I	GAAGAC	3 cut(s)	124, 175, 372
BstX2I	RGATCY	1 cut(s)	467
BstXI	CCANNNNNNTGG	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	467
BsuRI	GGCC	3 cut(s)	42, 76, 411
BtgI	CCRYGG	1 cut(s)	82
BtsCI	GGATG	1 cut(s)	300
BveI	ACCTGC	1 cut(s)	279
CaiI	CAGNNNCTG	1 cut(s)	105
Cfr10I	RCCGGY	1 cut(s)	72
Cfr13I	GGNCC	3 cut(s)	41, 75, 92
Cfr42I	CCGCGG	1 cut(s)	85
Csp6I	GTAC	1 cut(s)	381
CviQI	GTAC	1 cut(s)	381
DdeI	CTNAG	3 cut(s)	98, 539, 654
DpnI	GATC	3 cut(s)	339, 469, 521
DpnII	GATC	3 cut(s)	337, 467, 519
Eam1104I	CTCTTC	1 cut(s)	494
EarI	CTCTTC	1 cut(s)	494
EciI	GGCGGA	2 cut(s)	102, 188
Eco130I	CCWWGG	1 cut(s)	406
Eco31I	GGTCTC	1 cut(s)	131
Eco47I	GGWCC	1 cut(s)	92
EcoO109I	RGGNCCY	1 cut(s)	92
EcoT14I	CCWWGG	1 cut(s)	406
ErhI	CCWWGG	1 cut(s)	406
FaiI	YATR	4 cut(s)	39, 164, 194, 336
FalI	AAGNNNNNCTT	2 cut(s)	128, 160
FaqI	GGGAC	2 cut(s)	78, 462
FauI	CCCGC	1 cut(s)	60
Fnu4HI	GCNGC	6 cut(s)	82, 85, 103, 106, 115, 150
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	6 cut(s)	82, 85, 103, 106, 115, 150
FspBI	CTAG	1 cut(s)	588
GluI	GCNGC	6 cut(s)	82, 85, 103, 106, 115, 150
GsaI	CCCAGC	2 cut(s)	81, 510
HaeIII	GGCC	3 cut(s)	42, 76, 411
HapII	CCGG	3 cut(s)	73, 437, 573
HindIII	AAGCTT	1 cut(s)	530
HinfI	GANTC	4 cut(s)	210, 544, 564, 619
HpaII	CCGG	3 cut(s)	73, 437, 573
HphI	GGTGA	1 cut(s)	289
Hpy166II	GTNNAC	2 cut(s)	331, 514
Hpy188I	TCNGA	6 cut(s)	7, 305, 393, 540, 624, 651
Hpy188III	TCNNGA	3 cut(s)	479, 523, 568
Hpy8I	GTNNAC	2 cut(s)	331, 514
HpyAV	CCTTC	2 cut(s)	184, 601
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4IV	ACGT	2 cut(s)	222, 426
HpyCH4V	TGCA	2 cut(s)	117, 274
HpyF10VI	GCNNNNNNNGC	2 cut(s)	111, 114
HpyF3I	CTNAG	3 cut(s)	98, 539, 654
HpySE526I	ACGT	2 cut(s)	222, 426
KspI	CCGCGG	1 cut(s)	85
Kzo9I	GATC	3 cut(s)	337, 467, 519
LmnI	GCTCC	1 cut(s)	29
Lsp1109I	GCAGC	3 cut(s)	89, 92, 101
LweI	GCATC	2 cut(s)	126, 351
MaeI	CTAG	1 cut(s)	588
MaeII	ACGT	2 cut(s)	222, 426
MaeIII	GTNAC	3 cut(s)	223, 385, 599
MalI	GATC	3 cut(s)	339, 469, 521
MboI	GATC	3 cut(s)	337, 467, 519
MboII	GAAGA	6 cut(s)	112, 124, 136, 175, 377, 511
MfeI	CAATTG	4 cut(s)	153, 455, 666, 679
MflI	RGATCY	1 cut(s)	467
MhlI	GDGCHC	1 cut(s)	358
MluCI	AATT	8 cut(s)	153, 245, 455, 591, 631, 636, 666, 679
MlyI	GAGTC	2 cut(s)	219, 628
MmeI	TCCRAC	2 cut(s)	445, 495
MnlI	CCTC	7 cut(s)	83, 107, 188, 305, 366, 475, 534
MseI	TTAA	1 cut(s)	489
MslI	CAYNNNNRTG	1 cut(s)	24
MspA1I	CMGCKG	2 cut(s)	84, 102
MspI	CCGG	3 cut(s)	73, 437, 573
MspR9I	CCNGG	1 cut(s)	437
MunI	CAATTG	4 cut(s)	153, 455, 666, 679
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	2 cut(s)	111, 114
NciI	CCSGG	1 cut(s)	437
NdeII	GATC	3 cut(s)	337, 467, 519
NlaIV	GGNNCC	4 cut(s)	31, 94, 469, 612
NmeAIII	GCCGAG	1 cut(s)	81
NmuCI	GTSAC	2 cut(s)	385, 599
PfeI	GAWTC	2 cut(s)	544, 564
PkrI	GCNGC	6 cut(s)	83, 86, 104, 107, 116, 151
PleI	GAGTC	2 cut(s)	218, 627
PpsI	GAGTC	2 cut(s)	218, 627
Ppu21I	YACGTR	1 cut(s)	223
PpuMI	RGGWCCY	1 cut(s)	92
Psp1406I	AACGTT	1 cut(s)	426
Psp5II	RGGWCCY	1 cut(s)	92
PspFI	CCCAGC	2 cut(s)	77, 506
PspN4I	GGNNCC	4 cut(s)	31, 94, 469, 612
PspPI	GGNCC	3 cut(s)	41, 75, 92
PspPPI	RGGWCCY	1 cut(s)	92
PstNI	CAGNNNCTG	1 cut(s)	105
PsuI	RGATCY	1 cut(s)	467
PvuII	CAGCTG	1 cut(s)	102
RsaI	GTAC	1 cut(s)	382
RsaNI	GTAC	1 cut(s)	381
RseI	CAYNNNNRTG	1 cut(s)	24
SacII	CCGCGG	1 cut(s)	85
SaqAI	TTAA	1 cut(s)	489
SatI	GCNGC	6 cut(s)	82, 85, 103, 106, 115, 150
Sau3AI	GATC	3 cut(s)	337, 467, 519
Sau96I	GGNCC	3 cut(s)	41, 75, 92
SchI	GAGTC	2 cut(s)	219, 628
ScrFI	CCNGG	1 cut(s)	437
SduI	GDGCHC	1 cut(s)	358
SfaNI	GCATC	2 cut(s)	126, 351
SfcI	CTRYAG	1 cut(s)	109
Sfr303I	CCGCGG	1 cut(s)	85
SgrBI	CCGCGG	1 cut(s)	85
SinI	GGWCC	1 cut(s)	92
SmiMI	CAYNNNNRTG	1 cut(s)	24
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
Sse9I	AATT	8 cut(s)	153, 245, 455, 591, 631, 636, 666, 679
SsiI	CCGC	6 cut(s)	53, 82, 84, 87, 150, 199
SspMI	CTAG	1 cut(s)	588
StyD4I	CCNGG	1 cut(s)	435
StyI	CCWWGG	1 cut(s)	406
TaaI	ACNGT	1 cut(s)	385
TaiI	ACGT	2 cut(s)	225, 429
TaqI	TCGA	2 cut(s)	345, 522
TaqII	GACCGA	1 cut(s)	113
TasI	AATT	8 cut(s)	153, 245, 455, 591, 631, 636, 666, 679
TauI	GCSGC	3 cut(s)	84, 87, 152
TfiI	GAWTC	2 cut(s)	544, 564
Tru1I	TTAA	1 cut(s)	489
Tru9I	TTAA	1 cut(s)	489
TseFI	GTSAC	2 cut(s)	385, 599
TseI	GCWGC	3 cut(s)	102, 105, 114
Tsp45I	GTSAC	2 cut(s)	385, 599
TspDTI	ATGAA	1 cut(s)	542
VpaK11BI	GGWCC	1 cut(s)	92
XapI	RAATTY	1 cut(s)	631
XspI	CTAG	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.