Rw3G018200

YLS9-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0001177
Physical Location & Seq
Reverse (-)
20192995 .. 20194113
1119 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G018200.1

Sequence Viewer

Length: 684 bp
ATGTCAGAGAAACAAGCCCACTTGAATGGAGCCTACTACGGCCCATCCGTCCCGCCACGAGAGACCTACCACCGCCCCGGCCGCGGTGGAGGTCTCCTCAGCTGCTGCTGCAGCTGCATCTTCAGTCTCGTCTTCAAGCTCATCTTCGCCGCAGTTGTCTTCTTGGGCTTAGCCTTCCTCGTCTTCTGGCTCATAGTCAGGCCAACCGGAGTCAAGTTCCACGTCACGGATGCCACCCTCACCCAGTTCAACTTCTCCTCCGACAACAACCTCCACTACAATCTCGCTGCCAACCTGACCATCCGAAACCCCAACAAGAAGATCGGCATCTACTACGATCGCATCGAAGCCAGAGCCCTGTACGAGGGGCAAAGGTTCAGTACGGTTACTCTCACGCCGTTTTACCAAGGCCATAAAACTACAAACGTTCTGAACCCGGTGTTTCAGGGACAACAATTGATTGTTGGATCGAACTTGCTTGAGGAGTTTAATCAACAGAAGAGTGCAGGGGTTTACGAGATTGAGATGAAGCTTTATCTGAGGATTCGGTTCAAGTTGGGTAGAATCAAGACCGGAAAGTTCAAGCCTAGAATTGAGTGTGACTTGAAGGTTCCTTTGAACCAGAATGGGAATTCAGTTGGTACCTTTCAGACTGAGAAGTGCTCCATTGATTACTTCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_2

Protein Analysis

227

Amino Acids

25.75

Weight (kDa)

9.45

Isoelectric Point (pI)

32.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 99 - 195 1.1e-10 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 641
AccB1I GGYRCC 1 cut(s) 641
AccII CGCG 1 cut(s) 84
AciI CCGC 5 cut(s) 53, 73, 82, 84, 150
AclI AACGTT 1 cut(s) 426
AclWI GGATC 1 cut(s) 475
AcoI YGGCCR 1 cut(s) 79
AcsI RAATTY 1 cut(s) 631
AcuI CTGAAG 1 cut(s) 106
AfaI GTAC 3 cut(s) 362, 382, 643
AfiI CCNNNNNNNGG 3 cut(s) 83, 226, 364
AgsI TTSAA 8 cut(s) 25, 136, 250, 553, 583, 607, 619, 679
AjiI CACGTC 1 cut(s) 223
AluBI AGCT 4 cut(s) 102, 114, 139, 532
AluI AGCT 4 cut(s) 102, 114, 139, 532
Alw21I GWGCWC 1 cut(s) 665
Alw26I GTCTC 3 cut(s) 56, 98, 131
AlwI GGATC 1 cut(s) 475
AlwNI CAGNNNCTG 1 cut(s) 105
AoxI GGCC 4 cut(s) 40, 79, 200, 409
ApeKI GCWGC 6 cut(s) 102, 105, 108, 111, 114, 287
ApoI RAATTY 1 cut(s) 631
Asp718I GGTACC 1 cut(s) 641
AspS9I GGNCC 1 cut(s) 41
AsuC2I CCSGG 2 cut(s) 78, 437
AsuHPI GGTGA 1 cut(s) 232
BanI GGYRCC 1 cut(s) 641
BanII GRGCYC 1 cut(s) 358
BauI CACGAG 1 cut(s) 57
BbsI GAAGAC 3 cut(s) 124, 151, 175
Bbv12I GWGCWC 1 cut(s) 665
BbvCI CCTCAGC 1 cut(s) 98
BbvI GCAGC 6 cut(s) 89, 92, 95, 101, 123, 274
BccI CCATC 2 cut(s) 52, 308
BceAI ACGGC 2 cut(s) 55, 382
BcnI CCSGG 2 cut(s) 78, 437
BcoDI GTCTC 3 cut(s) 56, 98, 131
BfaI CTAG 1 cut(s) 588
BfmI CTRYAG 1 cut(s) 109
BisI GCNGC 8 cut(s) 82, 103, 106, 109, 112, 115, 150, 288
BlpI GCTNAGC 1 cut(s) 169
BlsI GCNGC 8 cut(s) 83, 104, 107, 110, 113, 116, 151, 289
Bme1390I CCNGG 2 cut(s) 78, 437
BmgBI CACGTC 1 cut(s) 223
BmgT120I GGNCC 1 cut(s) 41
BmiI GGNNCC 3 cut(s) 31, 612, 643
BmrFI CCNGG 2 cut(s) 78, 437
BmrI ACTGGG 1 cut(s) 238
BmsI GCATC 4 cut(s) 126, 220, 336, 351
BmuI ACTGGG 1 cut(s) 238
BpiI GAAGAC 3 cut(s) 124, 151, 175
BplI GAGNNNNNCTC 4 cut(s) 81, 113, 647, 679
Bpu10I CCTNAGC 1 cut(s) 98
Bpu1102I GCTNAGC 1 cut(s) 169
BpuEI CTTGAG 1 cut(s) 500
BpuMI CCSGG 2 cut(s) 78, 437
BsaBI GATNNNNATC 1 cut(s) 326
BsaI GGTCTC 2 cut(s) 56, 98
BsaJI CCNNGG 3 cut(s) 76, 82, 406
BsaWI WCCGGW 2 cut(s) 206, 572
BsaXI ACNNNNNCTCC 2 cut(s) 242, 272
Bsc4I CCNNNNNNNGG 3 cut(s) 83, 226, 364
Bse1I ACTGG 1 cut(s) 244
Bse8I GATNNNNATC 1 cut(s) 326
BseDI CCNNGG 3 cut(s) 76, 82, 406
BseGI GGATG 3 cut(s) 44, 235, 300
BseJI GATNNNNATC 1 cut(s) 326
BseLI CCNNNNNNNGG 3 cut(s) 83, 226, 364
BseMII CTCAG 3 cut(s) 112, 530, 645
BseNI ACTGG 1 cut(s) 244
BseRI GAGGAG 3 cut(s) 86, 247, 497
BseX3I CGGCCG 1 cut(s) 79
BseXI GCAGC 6 cut(s) 89, 92, 95, 101, 123, 274
BsgI GTGCAG 1 cut(s) 525
Bsh1236I CGCG 1 cut(s) 84
Bsh1285I CGRYCG 2 cut(s) 82, 340
BshFI GGCC 4 cut(s) 42, 81, 202, 411
BshNI GGYRCC 1 cut(s) 641
BsiEI CGRYCG 2 cut(s) 82, 340
BsiHKAI GWGCWC 1 cut(s) 665
BsiSI CCGG 4 cut(s) 78, 207, 437, 573
BslFI GGGAC 2 cut(s) 35, 462
BslI CCNNNNNNNGG 3 cut(s) 83, 226, 364
BsmAI GTCTC 3 cut(s) 56, 98, 131
BsmFI GGGAC 2 cut(s) 35, 462
BsnI GGCC 4 cut(s) 42, 81, 202, 411
Bso31I GGTCTC 2 cut(s) 56, 98
Bsp1286I GDGCHC 2 cut(s) 358, 665
Bsp143I GATC 3 cut(s) 321, 337, 467
Bsp1720I GCTNAGC 1 cut(s) 169
BspACI CCGC 5 cut(s) 53, 73, 82, 84, 150
BspANI GGCC 4 cut(s) 42, 81, 202, 411
BspCNI CTCAG 3 cut(s) 111, 531, 646
BspFNI CGCG 1 cut(s) 84
BspLI GGNNCC 3 cut(s) 31, 612, 643
BspMAI CTGCAG 1 cut(s) 113
BspPI GGATC 1 cut(s) 475
BspT107I GGYRCC 1 cut(s) 641
BspTNI GGTCTC 2 cut(s) 56, 98
BsrI ACTGG 1 cut(s) 244
BssECI CCNNGG 3 cut(s) 76, 82, 406
BssMI GATC 3 cut(s) 321, 337, 467
BssSI CACGAG 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 406
Bst2BI CACGAG 1 cut(s) 57
Bst4CI ACNGT 1 cut(s) 385
Bst6I CTCTTC 1 cut(s) 494
BstDEI CTNAG 4 cut(s) 98, 169, 539, 654
BstDSI CCRYGG 1 cut(s) 82
BstENI CCTNNNNNAGG 1 cut(s) 362
BstF5I GGATG 3 cut(s) 44, 235, 300
BstFNI CGCG 1 cut(s) 84
BstKTI GATC 3 cut(s) 324, 340, 470
BstMAI GTCTC 3 cut(s) 56, 98, 131
BstMBI GATC 3 cut(s) 321, 337, 467
BstMCI CGRYCG 2 cut(s) 82, 340
BstMWI GCNNNNNNNGC 4 cut(s) 81, 108, 111, 114
BstSCI CCNGG 2 cut(s) 76, 435
BstSFI CTRYAG 1 cut(s) 109
BstUI CGCG 1 cut(s) 84
BstV1I GCAGC 6 cut(s) 89, 92, 95, 101, 123, 274
BstV2I GAAGAC 3 cut(s) 124, 151, 175
BstXI CCANNNNNNTGG 1 cut(s) 26
BstZI CGGCCG 1 cut(s) 79
BsuRI GGCC 4 cut(s) 42, 81, 202, 411
BtgI CCRYGG 1 cut(s) 82
BtrI CACGTC 1 cut(s) 223
BtsCI GGATG 3 cut(s) 44, 235, 300
CaiI CAGNNNCTG 1 cut(s) 105
Cfr13I GGNCC 1 cut(s) 41
Cfr42I CCGCGG 1 cut(s) 85
Csp6I GTAC 3 cut(s) 361, 381, 642
CviQI GTAC 3 cut(s) 361, 381, 642
DdeI CTNAG 4 cut(s) 98, 169, 539, 654
DpnI GATC 3 cut(s) 323, 339, 469
DpnII GATC 3 cut(s) 321, 337, 467
EaeI YGGCCR 1 cut(s) 79
EagI CGGCCG 1 cut(s) 79
Eam1104I CTCTTC 1 cut(s) 494
EarI CTCTTC 1 cut(s) 494
EclXI CGGCCG 1 cut(s) 79
Eco130I CCWWGG 1 cut(s) 406
Eco24I GRGCYC 1 cut(s) 358
Eco31I GGTCTC 2 cut(s) 56, 98
Eco52I CGGCCG 1 cut(s) 79
Eco57I CTGAAG 1 cut(s) 106
EcoNI CCTNNNNNAGG 1 cut(s) 362
EcoRI GAATTC 1 cut(s) 631
EcoT14I CCWWGG 1 cut(s) 406
EcoT38I GRGCYC 1 cut(s) 358
ErhI CCWWGG 1 cut(s) 406
FaiI YATR 2 cut(s) 194, 414
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FaqI GGGAC 2 cut(s) 35, 462
FauI CCCGC 1 cut(s) 60
Fnu4HI GCNGC 8 cut(s) 82, 103, 106, 109, 112, 115, 150, 288
FokI GGATG 3 cut(s) 31, 242, 287
FriOI GRGCYC 1 cut(s) 358
Fsp4HI GCNGC 8 cut(s) 82, 103, 106, 109, 112, 115, 150, 288
FspBI CTAG 1 cut(s) 588
GluI GCNGC 8 cut(s) 82, 103, 106, 109, 112, 115, 150, 288
HaeIII GGCC 4 cut(s) 42, 81, 202, 411
HapII CCGG 4 cut(s) 78, 207, 437, 573
HindIII AAGCTT 1 cut(s) 530
HinfI GANTC 3 cut(s) 210, 544, 564
HpaII CCGG 4 cut(s) 78, 207, 437, 573
HphI GGTGA 1 cut(s) 232
Hpy166II GTNNAC 1 cut(s) 514
Hpy188I TCNGA 6 cut(s) 7, 262, 305, 432, 540, 651
Hpy188III TCNNGA 1 cut(s) 568
Hpy8I GTNNAC 1 cut(s) 514
HpyAV CCTTC 2 cut(s) 184, 601
HpyCH4III ACNGT 1 cut(s) 385
HpyCH4IV ACGT 2 cut(s) 222, 426
HpyCH4V TGCA 3 cut(s) 111, 117, 506
HpyF10VI GCNNNNNNNGC 4 cut(s) 81, 108, 111, 114
HpyF3I CTNAG 4 cut(s) 98, 169, 539, 654
HpySE526I ACGT 2 cut(s) 222, 426
KpnI GGTACC 1 cut(s) 645
KspI CCGCGG 1 cut(s) 85
Kzo9I GATC 3 cut(s) 321, 337, 467
LmnI GCTCC 2 cut(s) 29, 668
Lsp1109I GCAGC 6 cut(s) 89, 92, 95, 101, 123, 274
LweI GCATC 4 cut(s) 126, 220, 336, 351
MaeI CTAG 1 cut(s) 588
MaeII ACGT 2 cut(s) 222, 426
MaeIII GTNAC 3 cut(s) 223, 385, 599
MalI GATC 3 cut(s) 323, 339, 469
MboI GATC 3 cut(s) 321, 337, 467
MboII GAAGA 7 cut(s) 112, 124, 136, 151, 175, 331, 511
MfeI CAATTG 2 cut(s) 455, 679
MhlI GDGCHC 2 cut(s) 358, 665
MluCI AATT 4 cut(s) 455, 591, 631, 679
MlyI GAGTC 1 cut(s) 219
MmeI TCCRAC 2 cut(s) 285, 445
MnlI CCTC 9 cut(s) 83, 107, 188, 248, 268, 281, 358, 475, 534
MseI TTAA 1 cut(s) 489
MslI CAYNNNNRTG 1 cut(s) 24
MspA1I CMGCKG 3 cut(s) 84, 102, 114
MspI CCGG 4 cut(s) 78, 207, 437, 573
MspR9I CCNGG 2 cut(s) 78, 437
MunI CAATTG 2 cut(s) 455, 679
MvnI CGCG 1 cut(s) 84
MwoI GCNNNNNNNGC 4 cut(s) 81, 108, 111, 114
NciI CCSGG 2 cut(s) 78, 437
NdeII GATC 3 cut(s) 321, 337, 467
NlaIV GGNNCC 3 cut(s) 31, 612, 643
NmuCI GTSAC 2 cut(s) 223, 599
PcsI WCGNNNNNNNCGW 2 cut(s) 45, 342
PfeI GAWTC 2 cut(s) 544, 564
PkrI GCNGC 8 cut(s) 83, 104, 107, 110, 113, 116, 151, 289
Ple19I CGATCG 1 cut(s) 340
PleI GAGTC 1 cut(s) 218
PpsI GAGTC 1 cut(s) 218
Psp1406I AACGTT 1 cut(s) 426
PspN4I GGNNCC 3 cut(s) 31, 612, 643
PspPI GGNCC 1 cut(s) 41
PstI CTGCAG 1 cut(s) 113
PstNI CAGNNNCTG 1 cut(s) 105
PvuI CGATCG 1 cut(s) 340
PvuII CAGCTG 2 cut(s) 102, 114
RsaI GTAC 3 cut(s) 362, 382, 643
RsaNI GTAC 3 cut(s) 361, 381, 642
RseI CAYNNNNRTG 1 cut(s) 24
SacII CCGCGG 1 cut(s) 85
SaqAI TTAA 1 cut(s) 489
SatI GCNGC 8 cut(s) 82, 103, 106, 109, 112, 115, 150, 288
Sau3AI GATC 3 cut(s) 321, 337, 467
Sau96I GGNCC 1 cut(s) 41
SchI GAGTC 1 cut(s) 219
ScrFI CCNGG 2 cut(s) 78, 437
SduI GDGCHC 2 cut(s) 358, 665
SfaNI GCATC 4 cut(s) 126, 220, 336, 351
SfcI CTRYAG 1 cut(s) 109
Sfr303I CCGCGG 1 cut(s) 85
SgrBI CCGCGG 1 cut(s) 85
SmiMI CAYNNNNRTG 1 cut(s) 24
SmlI CTYRAG 1 cut(s) 479
SmoI CTYRAG 1 cut(s) 479
Sse9I AATT 4 cut(s) 455, 591, 631, 679
SsiI CCGC 5 cut(s) 53, 73, 82, 84, 150
SspMI CTAG 1 cut(s) 588
StyD4I CCNGG 2 cut(s) 76, 435
StyI CCWWGG 1 cut(s) 406
TaaI ACNGT 1 cut(s) 385
TaiI ACGT 2 cut(s) 225, 429
TaqI TCGA 2 cut(s) 345, 470
TasI AATT 4 cut(s) 455, 591, 631, 679
TauI GCSGC 2 cut(s) 84, 152
TfiI GAWTC 2 cut(s) 544, 564
Tru1I TTAA 1 cut(s) 489
Tru9I TTAA 1 cut(s) 489
TseFI GTSAC 2 cut(s) 223, 599
TseI GCWGC 6 cut(s) 102, 105, 108, 111, 114, 287
Tsp45I GTSAC 2 cut(s) 223, 599
TspDTI ATGAA 1 cut(s) 542
TspGWI ACGGA 2 cut(s) 37, 242
XagI CCTNNNNNAGG 1 cut(s) 362
XapI RAATTY 1 cut(s) 631
XspI CTAG 1 cut(s) 588
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.