Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001177

Physical Location & Seq

Genomic Coordinates Reverse (-)

3425746 .. 3426432

Gene Structure 687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1037300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGTCAGAGAAACAAGCCCATTTAAACGGGGCCTACTACGGCCCCTCAATCCCTCCCAAATCCCAGTCCTACCATCGCCCCGGCCGCGGTGGCGGCGGATGCCTCGGCTGCTGCTGCAGCTGCATCTTCGGCCTTGTCTTCAAGCTAATCATGACCGCCGTCGTCTTCATGGGGTTGGCGTTCTTCGTCTTTTGGCTCATCGTCCGCCCTAACCGTGTCAAGTTCCACGTCACGGATGCCACCCTCACGCAGTTCAACTTCTCCAACGACAACACCCTCCACTACAACCTTGCCCTCAACCTCACCATCCGGAACCCTAACAAGAAGATCGGTATTTACTACGACCGCATCGAGACCCGGGCCTTTTACGAGGATCAGAGGTTCAGCACGGTTACCTTGACGCCTTTCTACCAAGGGCACAAGCAAACGAACGTGCTGAACCCCGTGTTCCAAGGCCAGCAAGTGGTTCAAGGCTTAAAGGTGCTTTCCGAGTACAATCAGCAGAAGAGTACCGGGATTTACGAGATCGATTTGAAAATTTATCTTCGGATTCGGTTCAAATTCGGATTGATCAAGACTGGCAAGTTCAAGCCCAAGATTGAATGCGACTTGAAGGTTCCTATGACTCAGAACGGAAATTCAGTTGGCACTTTCCAGACTACCAAGTGCGACGTTGATTACTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

229

Amino Acids

26.03

Weight (kDa)

9.48

Isoelectric Point (pI)

32.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	101 - 202	1.6e-11	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35460 AT2G35980 AT3G11650 AT5G06320
fragaria_vesca	FvH4_6g20130 FvH4_6g20140
malus_domestica	MD12G1038600.v1.1 MD14G1037300.v1.1
prunus_persica	Prupe.6G357300_v2.0.a1 Prupe.7G097200_v2.0.a1
pyrus_communis	pycom14g03260
rosa_chinensis	RchiOBHm_Chr3g0475591 RchiOBHm_Chr3g0475631 RchiOBHm_Chr3g0475641 RchiOBHm_Chr3g0475651 RchiOBHm_Chr3g0475661
rosa_laevigata	RLG00000023825 RLG00000023826 RLG00000023827 RLG00000023828 RLG00000023830
rosa_multiflora	Rmu_co8195028.1_g000001 Rmu_sc0000539.1_g000033 Rmu_sc0000539.1_g000043 Rmu_sc0000539.1_g000048 Rmu_sc0000539.1_g000055
rosa_roxburghii	Rroxscaffold_6G00406030 Rroxscaffold_6G00406040 Rroxscaffold_6G00406070 Rroxscaffold_6G00406080 Rroxscaffold_6G00406100 Rroxscaffold_6G00406110
rosa_rugosa	Rorug03G0150500 Rorug03G0150500 Rorug03G0150600 Rorug03G0150700 Rorug03G0150800 Rorug03G0150800
rosa_samantha	Rh3AG200100 Rh3AG200200 Rh3AG200300 Rh3BG230500 Rh3BG230600 Rh3BG230700 Rh3CG224800 Rh3CG225000 Rh3CG225100 Rh3CG225200 Rh3CG225300 Rh3DG225600 Rh3DG225700 Rh3DG225800
rosa_wichuraiana	Rw3G018150 Rw3G018170 Rw3G018180 Rw3G018190 Rw3G018200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	463
AccII	CGCG	1 cut(s)	87
AccIII	TCCGGA	1 cut(s)	309
AciI	CCGC	7 cut(s)	85, 87, 93, 96, 156, 205, 346
AclWI	GGATC	1 cut(s)	381
AcoI	YGGCCR	1 cut(s)	82
AcsI	RAATTY	3 cut(s)	537, 560, 637
AcyI	GRCGYC	1 cut(s)	401
AfaI	GTAC	2 cut(s)	494, 511
AfiI	CCNNNNNNNGG	3 cut(s)	86, 232, 463
AgsI	TTSAA	8 cut(s)	142, 256, 470, 535, 559, 589, 602, 613
AjiI	CACGTC	1 cut(s)	229
AloI	GAACNNNNNNTCC	2 cut(s)	365, 397
AluBI	AGCT	2 cut(s)	120, 145
AluI	AGCT	2 cut(s)	120, 145
Alw26I	GTCTC	1 cut(s)	347
AlwI	GGATC	1 cut(s)	381
Ama87I	CYCGRG	1 cut(s)	357
Aor13HI	TCCGGA	1 cut(s)	309
AoxI	GGCC	6 cut(s)	30, 40, 82, 130, 360, 454
ApeKI	GCWGC	5 cut(s)	108, 111, 114, 117, 120
ApoI	RAATTY	3 cut(s)	537, 560, 637
AspS9I	GGNCC	3 cut(s)	30, 41, 360
AsuC2I	CCSGG	4 cut(s)	81, 358, 359, 514
AsuHPI	GGTGA	1 cut(s)	295
AvaI	CYCGRG	1 cut(s)	357
BaeGI	GKGCMC	1 cut(s)	420
BbsI	GAAGAC	2 cut(s)	130, 157
BbvI	GCAGC	5 cut(s)	95, 98, 101, 107, 129
BccI	CCATC	2 cut(s)	81, 314
BceAI	ACGGC	2 cut(s)	55, 143
BclI	TGATCA	1 cut(s)	570
BcnI	CCSGG	4 cut(s)	81, 358, 359, 514
BcoDI	GTCTC	1 cut(s)	347
BfmI	CTRYAG	1 cut(s)	115
BglI	GCCNNNNNGGC	1 cut(s)	90
BisI	GCNGC	7 cut(s)	85, 94, 109, 112, 115, 118, 121
BlsI	GCNGC	7 cut(s)	86, 95, 110, 113, 116, 119, 122
Bme1390I	CCNGG	4 cut(s)	81, 358, 359, 514
BmeT110I	CYCGRG	1 cut(s)	357
BmgBI	CACGTC	1 cut(s)	229
BmgT120I	GGNCC	3 cut(s)	30, 41, 360
BmiI	GGNNCC	4 cut(s)	31, 43, 314, 618
BmrFI	CCNGG	4 cut(s)	81, 358, 359, 514
BmrI	ACTGGG	1 cut(s)	58
BmsI	GCATC	4 cut(s)	89, 132, 226, 357
BmuI	ACTGGG	1 cut(s)	58
BoxI	GACNNNNGTC	1 cut(s)	158
BpiI	GAAGAC	2 cut(s)	130, 157
BpuMI	CCSGG	4 cut(s)	81, 358, 359, 514
Bsa29I	ATCGAT	1 cut(s)	528
BsaHI	GRCGYC	1 cut(s)	401
BsaI	GGTCTC	1 cut(s)	347
BsaJI	CCNNGG	6 cut(s)	79, 85, 103, 357, 412, 451
BsaWI	WCCGGW	1 cut(s)	309
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 232, 463
Bse1I	ACTGG	2 cut(s)	64, 583
BseAI	TCCGGA	1 cut(s)	309
BseCI	ATCGAT	1 cut(s)	528
BseDI	CCNNGG	6 cut(s)	79, 85, 103, 357, 412, 451
BseGI	GGATG	3 cut(s)	104, 241, 306
BseLI	CCNNNNNNNGG	3 cut(s)	86, 232, 463
BseMII	CTCAG	1 cut(s)	641
BseNI	ACTGG	2 cut(s)	64, 583
BseSI	GKGCMC	1 cut(s)	420
BseX3I	CGGCCG	1 cut(s)	82
BseXI	GCAGC	5 cut(s)	95, 98, 101, 107, 129
Bsh1236I	CGCG	1 cut(s)	87
Bsh1285I	CGRYCG	2 cut(s)	85, 346
BshFI	GGCC	6 cut(s)	32, 42, 84, 132, 362, 456
BshVI	ATCGAT	1 cut(s)	528
BsiEI	CGRYCG	2 cut(s)	85, 346
BsiHKCI	CYCGRG	1 cut(s)	357
BsiSI	CCGG	4 cut(s)	81, 310, 358, 513
BslI	CCNNNNNNNGG	3 cut(s)	86, 232, 463
BsmAI	GTCTC	1 cut(s)	347
BsmI	GAATGC	1 cut(s)	608
BsnI	GGCC	6 cut(s)	32, 42, 84, 132, 362, 456
Bso31I	GGTCTC	1 cut(s)	347
BsoBI	CYCGRG	1 cut(s)	357
Bsp1286I	GDGCHC	1 cut(s)	420
Bsp13I	TCCGGA	1 cut(s)	309
Bsp143I	GATC	4 cut(s)	327, 373, 525, 570
BspACI	CCGC	7 cut(s)	85, 87, 93, 96, 156, 205, 346
BspANI	GGCC	6 cut(s)	32, 42, 84, 132, 362, 456
BspCNI	CTCAG	1 cut(s)	640
BspDI	ATCGAT	1 cut(s)	528
BspEI	TCCGGA	1 cut(s)	309
BspFNI	CGCG	1 cut(s)	87
BspHI	TCATGA	1 cut(s)	150
BspLI	GGNNCC	4 cut(s)	31, 43, 314, 618
BspMAI	CTGCAG	1 cut(s)	119
BspPI	GGATC	1 cut(s)	381
BspTNI	GGTCTC	1 cut(s)	347
BsrI	ACTGG	2 cut(s)	64, 583
BssECI	CCNNGG	6 cut(s)	79, 85, 103, 357, 412, 451
BssMI	GATC	4 cut(s)	327, 373, 525, 570
BssNI	GRCGYC	1 cut(s)	401
BssT1I	CCWWGG	2 cut(s)	412, 451
Bst4CI	ACNGT	2 cut(s)	215, 391
Bst6I	CTCTTC	1 cut(s)	500
BstACI	GRCGYC	1 cut(s)	401
BstC8I	GCNNGC	1 cut(s)	458
BstDEI	CTNAG	1 cut(s)	627
BstDSI	CCRYGG	1 cut(s)	85
BstEII	GGTNACC	1 cut(s)	391
BstF5I	GGATG	3 cut(s)	104, 241, 306
BstFNI	CGCG	1 cut(s)	87
BstKTI	GATC	4 cut(s)	330, 376, 528, 573
BstMAI	GTCTC	1 cut(s)	347
BstMBI	GATC	4 cut(s)	327, 373, 525, 570
BstMCI	CGRYCG	2 cut(s)	85, 346
BstMWI	GCNNNNNNNGC	9 cut(s)	84, 90, 93, 99, 108, 114, 117, 120, 129
BstPAI	GACNNNNGTC	1 cut(s)	158
BstPI	GGTNACC	1 cut(s)	391
BstSCI	CCNGG	4 cut(s)	79, 356, 357, 512
BstSFI	CTRYAG	1 cut(s)	115
BstSLI	GKGCMC	1 cut(s)	420
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	5 cut(s)	95, 98, 101, 107, 129
BstV2I	GAAGAC	2 cut(s)	130, 157
BstZI	CGGCCG	1 cut(s)	82
Bsu15I	ATCGAT	1 cut(s)	528
BsuRI	GGCC	6 cut(s)	32, 42, 84, 132, 362, 456
BsuTUI	ATCGAT	1 cut(s)	528
BtgI	CCRYGG	1 cut(s)	85
BtgZI	GCGATG	1 cut(s)	59
BtrI	CACGTC	1 cut(s)	229
BtsCI	GGATG	3 cut(s)	104, 241, 306
Cac8I	GCNNGC	1 cut(s)	458
CciI	TCATGA	1 cut(s)	150
Cfr13I	GGNCC	3 cut(s)	30, 41, 360
Cfr42I	CCGCGG	1 cut(s)	88
Cfr9I	CCCGGG	1 cut(s)	357
ClaI	ATCGAT	1 cut(s)	528
CseI	GACGC	1 cut(s)	409
Csp6I	GTAC	2 cut(s)	493, 510
CviAII	CATG	2 cut(s)	151, 169
CviQI	GTAC	2 cut(s)	493, 510
DdeI	CTNAG	1 cut(s)	627
DpnI	GATC	4 cut(s)	329, 375, 527, 572
DpnII	GATC	4 cut(s)	327, 373, 525, 570
DraI	TTTAAA	1 cut(s)	24
EaeI	YGGCCR	1 cut(s)	82
EagI	CGGCCG	1 cut(s)	82
Eam1104I	CTCTTC	1 cut(s)	500
EarI	CTCTTC	1 cut(s)	500
EciI	GGCGGA	2 cut(s)	111, 194
EclXI	CGGCCG	1 cut(s)	82
Eco130I	CCWWGG	2 cut(s)	412, 451
Eco31I	GGTCTC	1 cut(s)	347
Eco52I	CGGCCG	1 cut(s)	82
Eco88I	CYCGRG	1 cut(s)	357
Eco91I	GGTNACC	1 cut(s)	391
EcoO109I	RGGNCCY	1 cut(s)	30
EcoO65I	GGTNACC	1 cut(s)	391
EcoT14I	CCWWGG	2 cut(s)	412, 451
ErhI	CCWWGG	2 cut(s)	412, 451
FaeI	CATG	2 cut(s)	154, 172
FaiI	YATR	3 cut(s)	152, 170, 623
FatI	CATG	2 cut(s)	150, 168
FbaI	TGATCA	1 cut(s)	570
Fnu4HI	GCNGC	7 cut(s)	85, 94, 109, 112, 115, 118, 121
FokI	GGATG	3 cut(s)	111, 248, 293
Fsp4HI	GCNGC	7 cut(s)	85, 94, 109, 112, 115, 118, 121
GluI	GCNGC	7 cut(s)	85, 94, 109, 112, 115, 118, 121
HaeIII	GGCC	6 cut(s)	32, 42, 84, 132, 362, 456
HapII	CCGG	4 cut(s)	81, 310, 358, 513
HgaI	GACGC	1 cut(s)	409
Hin1I	GRCGYC	1 cut(s)	401
Hin1II	CATG	2 cut(s)	154, 172
HinfI	GANTC	2 cut(s)	550, 625
HpaII	CCGG	4 cut(s)	81, 310, 358, 513
HphI	GGTGA	1 cut(s)	295
Hpy188I	TCNGA	6 cut(s)	7, 378, 490, 549, 566, 630
Hpy188III	TCNNGA	5 cut(s)	151, 310, 352, 574, 655
Hpy99I	CGWCG	2 cut(s)	164, 674
HpyAV	CCTTC	1 cut(s)	607
HpyCH4III	ACNGT	2 cut(s)	215, 391
HpyCH4IV	ACGT	3 cut(s)	228, 432, 672
HpyCH4V	TGCA	2 cut(s)	117, 123
HpyF10VI	GCNNNNNNNGC	9 cut(s)	84, 90, 93, 99, 108, 114, 117, 120, 129
HpyF3I	CTNAG	1 cut(s)	627
HpySE526I	ACGT	3 cut(s)	228, 432, 672
Hsp92I	GRCGYC	1 cut(s)	401
Hsp92II	CATG	2 cut(s)	154, 172
Kpn2I	TCCGGA	1 cut(s)	309
Ksp22I	TGATCA	1 cut(s)	570
KspI	CCGCGG	1 cut(s)	88
Kzo9I	GATC	4 cut(s)	327, 373, 525, 570
LpnPI	CCDG	8 cut(s)	77, 94, 323, 371, 470, 526, 564, 668
Lsp1109I	GCAGC	5 cut(s)	95, 98, 101, 107, 129
LweI	GCATC	4 cut(s)	89, 132, 226, 357
MaeII	ACGT	3 cut(s)	228, 432, 672
MaeIII	GTNAC	2 cut(s)	229, 391
MalI	GATC	4 cut(s)	329, 375, 527, 572
MboI	GATC	4 cut(s)	327, 373, 525, 570
MboII	GAAGA	7 cut(s)	118, 130, 157, 175, 337, 517, 536
MhlI	GDGCHC	1 cut(s)	420
MluCI	AATT	3 cut(s)	537, 560, 637
MlyI	GAGTC	1 cut(s)	619
MmeI	TCCRAC	1 cut(s)	288
MnlI	CCTC	9 cut(s)	55, 63, 113, 254, 287, 305, 311, 364, 372
MroI	TCCGGA	1 cut(s)	309
MseI	TTAA	2 cut(s)	23, 476
MspA1I	CMGCKG	2 cut(s)	87, 120
MspI	CCGG	4 cut(s)	81, 310, 358, 513
MspR9I	CCNGG	4 cut(s)	81, 358, 359, 514
Mva1269I	GAATGC	1 cut(s)	608
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	9 cut(s)	84, 90, 93, 99, 108, 114, 117, 120, 129
NciI	CCSGG	4 cut(s)	81, 358, 359, 514
NdeII	GATC	4 cut(s)	327, 373, 525, 570
NlaIII	CATG	2 cut(s)	154, 172
NlaIV	GGNNCC	4 cut(s)	31, 43, 314, 618
NmeAIII	GCCGAG	1 cut(s)	84
NmuCI	GTSAC	1 cut(s)	229
PagI	TCATGA	1 cut(s)	150
PcsI	WCGNNNNNNNCGW	1 cut(s)	348
PctI	GAATGC	1 cut(s)	608
PfeI	GAWTC	1 cut(s)	550
PflMI	CCANNNNNTGG	1 cut(s)	463
PkrI	GCNGC	7 cut(s)	86, 95, 110, 113, 116, 119, 122
PleI	GAGTC	1 cut(s)	619
PpsI	GAGTC	1 cut(s)	619
PshAI	GACNNNNGTC	1 cut(s)	158
PspEI	GGTNACC	1 cut(s)	391
PspN4I	GGNNCC	4 cut(s)	31, 43, 314, 618
PspPI	GGNCC	3 cut(s)	30, 41, 360
PstI	CTGCAG	1 cut(s)	119
PvuII	CAGCTG	1 cut(s)	120
RsaI	GTAC	2 cut(s)	494, 511
RsaNI	GTAC	2 cut(s)	493, 510
SacII	CCGCGG	1 cut(s)	88
SaqAI	TTAA	2 cut(s)	23, 476
SatI	GCNGC	7 cut(s)	85, 94, 109, 112, 115, 118, 121
Sau3AI	GATC	4 cut(s)	327, 373, 525, 570
Sau96I	GGNCC	3 cut(s)	30, 41, 360
SchI	GAGTC	1 cut(s)	619
ScrFI	CCNGG	4 cut(s)	81, 358, 359, 514
SduI	GDGCHC	1 cut(s)	420
SfaNI	GCATC	4 cut(s)	89, 132, 226, 357
SfcI	CTRYAG	1 cut(s)	115
Sfr303I	CCGCGG	1 cut(s)	88
SgrBI	CCGCGG	1 cut(s)	88
SmaI	CCCGGG	1 cut(s)	359
Sse9I	AATT	3 cut(s)	537, 560, 637
SsiI	CCGC	7 cut(s)	85, 87, 93, 96, 156, 205, 346
StyD4I	CCNGG	4 cut(s)	79, 356, 357, 512
StyI	CCWWGG	2 cut(s)	412, 451
TaaI	ACNGT	2 cut(s)	215, 391
TaiI	ACGT	3 cut(s)	231, 435, 675
TaqI	TCGA	2 cut(s)	351, 528
TasI	AATT	3 cut(s)	537, 560, 637
TatI	WGTACW	1 cut(s)	492
TauI	GCSGC	2 cut(s)	87, 96
TfiI	GAWTC	1 cut(s)	550
Tru1I	TTAA	2 cut(s)	23, 476
Tru9I	TTAA	2 cut(s)	23, 476
TseFI	GTSAC	1 cut(s)	229
TseI	GCWGC	5 cut(s)	108, 111, 114, 117, 120
Tsp45I	GTSAC	1 cut(s)	229
TspDTI	ATGAA	1 cut(s)	157
TspGWI	ACGGA	2 cut(s)	248, 648
TspMI	CCCGGG	1 cut(s)	357
Van91I	CCANNNNNTGG	1 cut(s)	463
XapI	RAATTY	3 cut(s)	537, 560, 637
XmaI	CCCGGG	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.