Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001177

Physical Location & Seq

Genomic Coordinates Reverse (-)

21096257 .. 21098641

Gene Structure 2385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG225000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGGCAGAGAAAGAAGAAGCCCACTTAAATGGGGCATACTACGGCCCCTCAGTCCCGGCCAGCAAATCCTACCACCGTCCCAGCCGCGGCGGTGGCCCCCTCGGCTGCTGCTGCAGTTGCATCTTCGGCCTCGTCTTCAAAATCATCTTCGCAGCAGTCGTCTTCATGGGACTAGCCTTCCTCGTCTTCTGGCTCATAGTACGCCCCACTAAAGTCAAGTTCCACGTCACCGACGCCACGCTCACCCAATTCAACTTCTCCACCGATAGTAGCCTGCATTACAACCTAGCCCTCAACCTCACCATTCGAAACCCCAACAAGAAGATCGGTGTCTACTACGACCGCATTGAAGCCAGAGCTCTTTACGAGGGCCAGAGGTTTGGTACGGTCACCCTCACGCCATTTTACCAAGGCCACAAAACCACAAACGTTTTGAACCCGGTGTTTCAGGGACAGCAATTGATTGTTGGATCCAACTTGCTTGATGAGTTTAATCAACAGAAAAGTGCAGGGGTTTACGAGATTGAGATGAAGCTTTATTTGAGGATTCGGTTCAAGTTGGGTAGAATCAAGACTGGAAAGTTCAAGCCTAGAATTGAATGTGACTTGAAGGTTCCTTTGAACCAGAATGGGAATTCATCTAACAACTTTGTAGAGGGTGTTTCTCACAAGATCAGGTGTCAGGTCAAGGAGCTAGAGAGGGTTTCAGGAGTCAAGAGCAGTTCTCTCACGATGGATGGAGTTCCAGTGGATTCATACCTCACTAGGTATTCATCACATCACTTATCATTAGCTTTTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

267

Amino Acids

29.99

Weight (kDa)

9.51

Isoelectric Point (pI)

30.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	100 - 195	9.1e-11	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35460 AT2G35980 AT3G11650 AT5G06320
fragaria_vesca	FvH4_6g20130 FvH4_6g20140
malus_domestica	MD12G1038600.v1.1 MD14G1037300.v1.1
prunus_persica	Prupe.6G357300_v2.0.a1 Prupe.7G097200_v2.0.a1
pyrus_communis	pycom14g03260
rosa_chinensis	RchiOBHm_Chr3g0475591 RchiOBHm_Chr3g0475631 RchiOBHm_Chr3g0475641 RchiOBHm_Chr3g0475651 RchiOBHm_Chr3g0475661
rosa_laevigata	RLG00000023825 RLG00000023826 RLG00000023827 RLG00000023828 RLG00000023830
rosa_multiflora	Rmu_co8195028.1_g000001 Rmu_sc0000539.1_g000033 Rmu_sc0000539.1_g000043 Rmu_sc0000539.1_g000048 Rmu_sc0000539.1_g000055
rosa_roxburghii	Rroxscaffold_6G00406030 Rroxscaffold_6G00406040 Rroxscaffold_6G00406070 Rroxscaffold_6G00406080 Rroxscaffold_6G00406100 Rroxscaffold_6G00406110
rosa_rugosa	Rorug03G0150500 Rorug03G0150500 Rorug03G0150600 Rorug03G0150700 Rorug03G0150800 Rorug03G0150800
rosa_samantha	Rh3AG200100 Rh3AG200200 Rh3AG200300 Rh3BG230500 Rh3BG230600 Rh3BG230700 Rh3CG224800 Rh3CG225000 Rh3CG225100 Rh3CG225200 Rh3CG225300 Rh3DG225600 Rh3DG225700 Rh3DG225800
rosa_wichuraiana	Rw3G018150 Rw3G018170 Rw3G018180 Rw3G018190 Rw3G018200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	333
AccII	CGCG	1 cut(s)	87
AciI	CCGC	4 cut(s)	85, 87, 90, 343
AclI	AACGTT	1 cut(s)	429
AclWI	GGATC	2 cut(s)	465, 478
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	1 cut(s)	634
AcyI	GRCGYC	1 cut(s)	234
AfaI	GTAC	2 cut(s)	201, 385
AfiI	CCNNNNNNNGG	1 cut(s)	86
AgsI	TTSAA	9 cut(s)	139, 253, 350, 436, 556, 586, 599, 610, 622
AjiI	CACGTC	1 cut(s)	226
AluBI	AGCT	4 cut(s)	359, 535, 694, 794
AluI	AGCT	4 cut(s)	359, 535, 694, 794
Alw21I	GWGCWC	1 cut(s)	361
AlwI	GGATC	2 cut(s)	465, 478
AoxI	GGCC	6 cut(s)	43, 57, 94, 127, 370, 412
ApeKI	GCWGC	4 cut(s)	105, 108, 111, 152
ApoI	RAATTY	1 cut(s)	634
AspS9I	GGNCC	3 cut(s)	44, 95, 370
AsuC2I	CCSGG	2 cut(s)	56, 440
AsuHPI	GGTGA	4 cut(s)	220, 235, 292, 382
AsuII	TTCGAA	1 cut(s)	307
BamHI	GGATCC	1 cut(s)	470
BanII	GRGCYC	1 cut(s)	361
BbsI	GAAGAC	3 cut(s)	127, 154, 178
Bbv12I	GWGCWC	1 cut(s)	361
BbvI	GCAGC	4 cut(s)	92, 95, 98, 164
BccI	CCATC	2 cut(s)	727, 731
BceAI	ACGGC	1 cut(s)	58
BcnI	CCSGG	2 cut(s)	56, 440
BfaI	CTAG	5 cut(s)	173, 287, 591, 695, 765
BfmI	CTRYAG	1 cut(s)	112
BglI	GCCNNNNNGGC	1 cut(s)	102
BisI	GCNGC	6 cut(s)	85, 88, 106, 109, 112, 153
BlsI	GCNGC	6 cut(s)	86, 89, 107, 110, 113, 154
Bme1390I	CCNGG	2 cut(s)	56, 440
BmgBI	CACGTC	1 cut(s)	226
BmgT120I	GGNCC	3 cut(s)	44, 95, 370
BmiI	GGNNCC	4 cut(s)	46, 97, 472, 615
BmrFI	CCNGG	2 cut(s)	56, 440
BmsI	GCATC	1 cut(s)	129
BpiI	GAAGAC	3 cut(s)	127, 154, 178
BplI	GAGNNNNNCTC	2 cut(s)	709, 741
Bpu14I	TTCGAA	1 cut(s)	307
BpuMI	CCSGG	2 cut(s)	56, 440
BsaHI	GRCGYC	1 cut(s)	234
BsaJI	CCNNGG	3 cut(s)	85, 100, 409
BsaXI	ACNNNNNCTCC	2 cut(s)	732, 762
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
Bse1I	ACTGG	2 cut(s)	580, 746
BseDI	CCNNGG	3 cut(s)	85, 100, 409
BseGI	GGATG	1 cut(s)	742
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseMII	CTCAG	1 cut(s)	63
BseNI	ACTGG	2 cut(s)	580, 746
BseXI	GCAGC	4 cut(s)	92, 95, 98, 164
BseYI	CCCAGC	1 cut(s)	80
BsgI	GTGCAG	1 cut(s)	528
Bsh1236I	CGCG	1 cut(s)	87
Bsh1285I	CGRYCG	1 cut(s)	343
BshFI	GGCC	6 cut(s)	45, 59, 96, 129, 372, 414
BsiEI	CGRYCG	1 cut(s)	343
BsiHKAI	GWGCWC	1 cut(s)	361
BsiSI	CCGG	2 cut(s)	56, 440
BslFI	GGGAC	4 cut(s)	38, 63, 183, 465
BslI	CCNNNNNNNGG	1 cut(s)	86
BsmFI	GGGAC	4 cut(s)	38, 63, 183, 465
BsnI	GGCC	6 cut(s)	45, 59, 96, 129, 372, 414
Bsp119I	TTCGAA	1 cut(s)	307
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp143I	GATC	3 cut(s)	324, 470, 672
BspACI	CCGC	4 cut(s)	85, 87, 90, 343
BspANI	GGCC	6 cut(s)	45, 59, 96, 129, 372, 414
BspCNI	CTCAG	1 cut(s)	62
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	4 cut(s)	46, 97, 472, 615
BspMAI	CTGCAG	1 cut(s)	116
BspPI	GGATC	2 cut(s)	465, 478
BspT104I	TTCGAA	1 cut(s)	307
BsrI	ACTGG	2 cut(s)	580, 746
BssECI	CCNNGG	3 cut(s)	85, 100, 409
BssMI	GATC	3 cut(s)	324, 470, 672
BssNI	GRCGYC	1 cut(s)	234
BssT1I	CCWWGG	1 cut(s)	409
Bst4CI	ACNGT	2 cut(s)	77, 388
BstACI	GRCGYC	1 cut(s)	234
BstBI	TTCGAA	1 cut(s)	307
BstC8I	GCNNGC	2 cut(s)	61, 275
BstDEI	CTNAG	1 cut(s)	49
BstDSI	CCRYGG	1 cut(s)	85
BstEII	GGTNACC	1 cut(s)	388
BstF5I	GGATG	1 cut(s)	742
BstFNI	CGCG	1 cut(s)	87
BstKTI	GATC	3 cut(s)	327, 473, 675
BstMBI	GATC	3 cut(s)	324, 470, 672
BstMCI	CGRYCG	1 cut(s)	343
BstMWI	GCNNNNNNNGC	5 cut(s)	93, 102, 111, 117, 126
BstPI	GGTNACC	1 cut(s)	388
BstSCI	CCNGG	2 cut(s)	54, 438
BstSFI	CTRYAG	1 cut(s)	112
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	4 cut(s)	92, 95, 98, 164
BstV2I	GAAGAC	3 cut(s)	127, 154, 178
BstX2I	RGATCY	1 cut(s)	470
BstXI	CCANNNNNNTGG	2 cut(s)	29, 380
BstYI	RGATCY	1 cut(s)	470
BsuRI	GGCC	6 cut(s)	45, 59, 96, 129, 372, 414
BtgI	CCRYGG	1 cut(s)	85
BtrI	CACGTC	1 cut(s)	226
BtsCI	GGATG	1 cut(s)	742
BtsIMutI	CAGTG	1 cut(s)	753
Cac8I	GCNNGC	2 cut(s)	61, 275
Cfr13I	GGNCC	3 cut(s)	44, 95, 370
Cfr42I	CCGCGG	1 cut(s)	88
CseI	GACGC	1 cut(s)	242
Csp6I	GTAC	2 cut(s)	200, 384
CviAII	CATG	1 cut(s)	166
CviQI	GTAC	2 cut(s)	200, 384
DdeI	CTNAG	1 cut(s)	49
DpnI	GATC	3 cut(s)	326, 472, 674
DpnII	GATC	3 cut(s)	324, 470, 672
EaeI	YGGCCR	1 cut(s)	57
Ecl136II	GAGCTC	1 cut(s)	359
Eco130I	CCWWGG	1 cut(s)	409
Eco24I	GRGCYC	1 cut(s)	361
Eco53kI	GAGCTC	1 cut(s)	359
Eco91I	GGTNACC	1 cut(s)	388
EcoICRI	GAGCTC	1 cut(s)	359
EcoO65I	GGTNACC	1 cut(s)	388
EcoRI	GAATTC	1 cut(s)	634
EcoT14I	CCWWGG	1 cut(s)	409
EcoT38I	GRGCYC	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	409
FaeI	CATG	1 cut(s)	169
FaiI	YATR	5 cut(s)	37, 167, 197, 757, 802
FaqI	GGGAC	4 cut(s)	38, 63, 183, 465
FatI	CATG	1 cut(s)	165
FblI	GTMKAC	1 cut(s)	333
Fnu4HI	GCNGC	6 cut(s)	85, 88, 106, 109, 112, 153
FokI	GGATG	1 cut(s)	749
FriOI	GRGCYC	1 cut(s)	361
Fsp4HI	GCNGC	6 cut(s)	85, 88, 106, 109, 112, 153
FspBI	CTAG	5 cut(s)	173, 287, 591, 695, 765
GluI	GCNGC	6 cut(s)	85, 88, 106, 109, 112, 153
GsaI	CCCAGC	1 cut(s)	84
HaeIII	GGCC	6 cut(s)	45, 59, 96, 129, 372, 414
HapII	CCGG	2 cut(s)	56, 440
HgaI	GACGC	1 cut(s)	242
Hin1I	GRCGYC	1 cut(s)	234
Hin1II	CATG	1 cut(s)	169
HindIII	AAGCTT	1 cut(s)	533
HinfI	GANTC	4 cut(s)	547, 567, 711, 752
HpaII	CCGG	2 cut(s)	56, 440
HphI	GGTGA	4 cut(s)	220, 235, 292, 382
Hpy166II	GTNNAC	2 cut(s)	334, 517
Hpy188III	TCNNGA	4 cut(s)	571, 708, 715, 730
Hpy8I	GTNNAC	2 cut(s)	334, 517
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	2 cut(s)	187, 604
HpyCH4III	ACNGT	2 cut(s)	77, 388
HpyCH4IV	ACGT	2 cut(s)	225, 429
HpyCH4V	TGCA	4 cut(s)	114, 120, 277, 509
HpyF10VI	GCNNNNNNNGC	5 cut(s)	93, 102, 111, 117, 126
HpyF3I	CTNAG	1 cut(s)	49
HpySE526I	ACGT	2 cut(s)	225, 429
Hsp92I	GRCGYC	1 cut(s)	234
Hsp92II	CATG	1 cut(s)	169
KspI	CCGCGG	1 cut(s)	88
Kzo9I	GATC	3 cut(s)	324, 470, 672
LmnI	GCTCC	1 cut(s)	691
Lsp1109I	GCAGC	4 cut(s)	92, 95, 98, 164
LweI	GCATC	1 cut(s)	129
MaeI	CTAG	5 cut(s)	173, 287, 591, 695, 765
MaeII	ACGT	2 cut(s)	225, 429
MaeIII	GTNAC	3 cut(s)	226, 388, 602
MalI	GATC	3 cut(s)	326, 472, 674
MboI	GATC	3 cut(s)	324, 470, 672
MboII	GAAGA	7 cut(s)	26, 115, 127, 139, 154, 178, 334
MfeI	CAATTG	1 cut(s)	458
MflI	RGATCY	1 cut(s)	470
MhlI	GDGCHC	1 cut(s)	361
MluCI	AATT	4 cut(s)	248, 458, 594, 634
MlyI	GAGTC	1 cut(s)	720
MmeI	TCCRAC	2 cut(s)	448, 498
MseI	TTAA	2 cut(s)	26, 492
MslI	CAYNNNNRTG	1 cut(s)	27
MspA1I	CMGCKG	1 cut(s)	87
MspI	CCGG	2 cut(s)	56, 440
MspR9I	CCNGG	2 cut(s)	56, 440
MunI	CAATTG	1 cut(s)	458
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	5 cut(s)	93, 102, 111, 117, 126
NciI	CCSGG	2 cut(s)	56, 440
NdeII	GATC	3 cut(s)	324, 470, 672
NlaIII	CATG	1 cut(s)	169
NlaIV	GGNNCC	4 cut(s)	46, 97, 472, 615
NmeAIII	GCCGAG	1 cut(s)	81
NmuCI	GTSAC	3 cut(s)	226, 388, 602
NspV	TTCGAA	1 cut(s)	307
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PfeI	GAWTC	3 cut(s)	547, 567, 752
PkrI	GCNGC	6 cut(s)	86, 89, 107, 110, 113, 154
PleI	GAGTC	1 cut(s)	719
PpsI	GAGTC	1 cut(s)	719
Psp124BI	GAGCTC	1 cut(s)	361
Psp1406I	AACGTT	1 cut(s)	429
PspEI	GGTNACC	1 cut(s)	388
PspFI	CCCAGC	1 cut(s)	80
PspN4I	GGNNCC	4 cut(s)	46, 97, 472, 615
PspPI	GGNCC	3 cut(s)	44, 95, 370
PstI	CTGCAG	1 cut(s)	116
PsuI	RGATCY	1 cut(s)	470
RsaI	GTAC	2 cut(s)	201, 385
RsaNI	GTAC	2 cut(s)	200, 384
RseI	CAYNNNNRTG	1 cut(s)	27
SacI	GAGCTC	1 cut(s)	361
SacII	CCGCGG	1 cut(s)	88
SaqAI	TTAA	2 cut(s)	26, 492
SatI	GCNGC	6 cut(s)	85, 88, 106, 109, 112, 153
Sau3AI	GATC	3 cut(s)	324, 470, 672
Sau96I	GGNCC	3 cut(s)	44, 95, 370
SchI	GAGTC	1 cut(s)	720
ScrFI	CCNGG	2 cut(s)	56, 440
SduI	GDGCHC	1 cut(s)	361
SfaNI	GCATC	1 cut(s)	129
SfcI	CTRYAG	1 cut(s)	112
Sfr303I	CCGCGG	1 cut(s)	88
SfuI	TTCGAA	1 cut(s)	307
SgrBI	CCGCGG	1 cut(s)	88
SmiMI	CAYNNNNRTG	1 cut(s)	27
Sse9I	AATT	4 cut(s)	248, 458, 594, 634
SsiI	CCGC	4 cut(s)	85, 87, 90, 343
SspMI	CTAG	5 cut(s)	173, 287, 591, 695, 765
SstI	GAGCTC	1 cut(s)	361
StyD4I	CCNGG	2 cut(s)	54, 438
StyI	CCWWGG	1 cut(s)	409
TaaI	ACNGT	2 cut(s)	77, 388
TaiI	ACGT	2 cut(s)	228, 432
TaqI	TCGA	1 cut(s)	307
TasI	AATT	4 cut(s)	248, 458, 594, 634
TauI	GCSGC	2 cut(s)	87, 90
TfiI	GAWTC	3 cut(s)	547, 567, 752
Tru1I	TTAA	2 cut(s)	26, 492
Tru9I	TTAA	2 cut(s)	26, 492
TscAI	CASTG	1 cut(s)	753
TseFI	GTSAC	3 cut(s)	226, 388, 602
TseI	GCWGC	4 cut(s)	105, 108, 111, 152
Tsp45I	GTSAC	3 cut(s)	226, 388, 602
TspDTI	ATGAA	5 cut(s)	154, 545, 627, 744, 762
TspRI	CASTG	1 cut(s)	753
XapI	RAATTY	1 cut(s)	634
XmiI	GTMKAC	1 cut(s)	333
XspI	CTAG	5 cut(s)	173, 287, 591, 695, 765

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.