Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001177

Physical Location & Seq

Genomic Coordinates Reverse (-)

1930793 .. 1931782

Gene Structure 990 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G06320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCGGACTTAAACGGTGCGTATTACGGACCATCGATTCCACCGCCGAAGAAAGTCTCTCACAGCCACGGCAGACGCGGCGGTGGATGCGGTTGTTTAGGTGACTGTCTTGGCTGCTGCGGCTGCTGTATCTTAAGCGTCATCTTCAACATCCTCATAACCATAGCCGTCTTATTAGGCATAGCTGCTCTAATCATCTGGCTCATTTTCAGACCCAACGCTATCAAATTCCACGTCACCGACGCTAAACTCACCGAATTCACACTCGACCCAACCAACAACCTCCGATACAATCTCGATCTCAATTTCACAATCCGTAACCCTAACCGCCGGATCGGTGTTTACTATGATGAAATCGAAGTCAGAGGATACTACGGTGATCAGCGATTCGGTATGAGTAACAACATCTCGAAGTTTTACCAGGGACATAAGAACACGACGGTGGTTGGAACTAAACTCGTGGGACAGCAATTGGTGCTGCTTGACGGCGGAGAGAGGAAGGATTTGAACGAGGATGTGAATTCTCAGATCTATAGGATCGATGCCAAGCTGAGACTTAAGATTAGGTTTAAGTTTGGGTTGATCAAGTCGTGGAGGTTCAAGCCCAAGATCAAGTGCGATCTCAAGGTTCCTCTTACCTCTAATTCAACCAGCGGGTTTGTTTTTCAGCCGACCAAGTGTGACGTTGACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0002252 GO:0002376 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009615 GO:0009617 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0010033 GO:0012505 GO:0014070 GO:0016020 GO:0030054 GO:0031090 GO:0031224 GO:0031225 GO:0031226 GO:0042221 GO:0042493 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0045087 GO:0046658 GO:0046677 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0098542 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

231

Amino Acids

25.95

Weight (kDa)

9.35

Isoelectric Point (pI)

30.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	103 - 206	1.7e-12	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001177)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35460 AT2G35980 AT3G11650 AT5G06320
fragaria_vesca	FvH4_6g20130 FvH4_6g20140
malus_domestica	MD12G1038600.v1.1 MD14G1037300.v1.1
prunus_persica	Prupe.6G357300_v2.0.a1 Prupe.7G097200_v2.0.a1
pyrus_communis	pycom14g03260
rosa_chinensis	RchiOBHm_Chr3g0475591 RchiOBHm_Chr3g0475631 RchiOBHm_Chr3g0475641 RchiOBHm_Chr3g0475651 RchiOBHm_Chr3g0475661
rosa_laevigata	RLG00000023825 RLG00000023826 RLG00000023827 RLG00000023828 RLG00000023830
rosa_multiflora	Rmu_co8195028.1_g000001 Rmu_sc0000539.1_g000033 Rmu_sc0000539.1_g000043 Rmu_sc0000539.1_g000048 Rmu_sc0000539.1_g000055
rosa_roxburghii	Rroxscaffold_6G00406030 Rroxscaffold_6G00406040 Rroxscaffold_6G00406070 Rroxscaffold_6G00406080 Rroxscaffold_6G00406100 Rroxscaffold_6G00406110
rosa_rugosa	Rorug03G0150500 Rorug03G0150500 Rorug03G0150600 Rorug03G0150700 Rorug03G0150800 Rorug03G0150800
rosa_samantha	Rh3AG200100 Rh3AG200200 Rh3AG200300 Rh3BG230500 Rh3BG230600 Rh3BG230700 Rh3CG224800 Rh3CG225000 Rh3CG225100 Rh3CG225200 Rh3CG225300 Rh3DG225600 Rh3DG225700 Rh3DG225800
rosa_wichuraiana	Rw3G018150 Rw3G018170 Rw3G018180 Rw3G018190 Rw3G018200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	78
AciI	CCGC	9 cut(s)	5, 44, 78, 81, 90, 120, 328, 489, 654
AclWI	GGATC	2 cut(s)	341, 545
AcsI	RAATTY	3 cut(s)	227, 257, 520
AflII	CTTAAG	2 cut(s)	133, 557
AgsI	TTSAA	4 cut(s)	148, 508, 601, 648
AjiI	CACGTC	1 cut(s)	235
AjnI	CCWGG	1 cut(s)	420
AleI	CACNNNNGTG	1 cut(s)	440
AluBI	AGCT	2 cut(s)	185, 550
AluI	AGCT	2 cut(s)	185, 550
Alw26I	GTCTC	2 cut(s)	61, 547
AlwI	GGATC	2 cut(s)	341, 545
ApeKI	GCWGC	5 cut(s)	114, 117, 123, 185, 478
ApoI	RAATTY	3 cut(s)	227, 257, 520
ArsI	GACNNNNNNTTYG	2 cut(s)	219, 251
AspS9I	GGNCC	1 cut(s)	29
AsuHPI	GGTGA	4 cut(s)	113, 229, 244, 389
AvaII	GGWCC	1 cut(s)	29
BaeI	ACNNNNGTAYC	2 cut(s)	361, 394
BauI	CACGAG	1 cut(s)	458
BbvI	GCAGC	5 cut(s)	101, 104, 110, 172, 465
BccI	CCATC	1 cut(s)	40
BceAI	ACGGC	3 cut(s)	85, 152, 502
BciT130I	CCWGG	1 cut(s)	422
BciVI	GTATCC	1 cut(s)	362
BclI	TGATCA	2 cut(s)	379, 582
BcoDI	GTCTC	2 cut(s)	61, 547
BfmI	CTRYAG	1 cut(s)	532
BfrI	CTTAAG	2 cut(s)	133, 557
BfuI	GTATCC	1 cut(s)	362
BglII	AGATCT	1 cut(s)	528
BisI	GCNGC	7 cut(s)	79, 115, 118, 121, 124, 186, 479
BlsI	GCNGC	7 cut(s)	80, 116, 119, 122, 125, 187, 480
Bme1390I	CCNGG	1 cut(s)	422
Bme18I	GGWCC	1 cut(s)	29
BmgBI	CACGTC	1 cut(s)	235
BmgT120I	GGNCC	1 cut(s)	29
BmiI	GGNNCC	1 cut(s)	630
BmrFI	CCNGG	1 cut(s)	422
BmsI	GCATC	2 cut(s)	77, 532
BpuEI	CTTGAG	1 cut(s)	608
Bsa29I	ATCGAT	2 cut(s)	35, 540
BsaJI	CCNNGG	2 cut(s)	67, 421
BseBI	CCWGG	1 cut(s)	422
BseCI	ATCGAT	2 cut(s)	35, 540
BseDI	CCNNGG	2 cut(s)	67, 421
BseGI	GGATG	3 cut(s)	92, 150, 520
BseMII	CTCAG	2 cut(s)	539, 542
BseXI	GCAGC	5 cut(s)	101, 104, 110, 172, 465
Bsh1236I	CGCG	1 cut(s)	78
BshVI	ATCGAT	2 cut(s)	35, 540
BsiSI	CCGG	1 cut(s)	331
BslFI	GGGAC	2 cut(s)	438, 477
BsmAI	GTCTC	2 cut(s)	61, 547
BsmFI	GGGAC	2 cut(s)	438, 477
Bsp143I	GATC	8 cut(s)	298, 333, 379, 528, 537, 582, 609, 619
BspACI	CCGC	9 cut(s)	5, 44, 78, 81, 90, 120, 328, 489, 654
BspCNI	CTCAG	2 cut(s)	538, 543
BspDI	ATCGAT	2 cut(s)	35, 540
BspFNI	CGCG	1 cut(s)	78
BspLI	GGNNCC	1 cut(s)	630
BspPI	GGATC	2 cut(s)	341, 545
BspTI	CTTAAG	2 cut(s)	133, 557
BssECI	CCNNGG	2 cut(s)	67, 421
BssMI	GATC	8 cut(s)	298, 333, 379, 528, 537, 582, 609, 619
BssSI	CACGAG	1 cut(s)	458
Bst2BI	CACGAG	1 cut(s)	458
Bst2UI	CCWGG	1 cut(s)	422
Bst4CI	ACNGT	4 cut(s)	17, 107, 377, 442
BstAFI	CTTAAG	2 cut(s)	133, 557
BstAPI	GCANNNNNTGC	1 cut(s)	475
BstDEI	CTNAG	2 cut(s)	525, 551
BstDSI	CCRYGG	1 cut(s)	67
BstF5I	GGATG	3 cut(s)	92, 150, 520
BstFNI	CGCG	1 cut(s)	78
BstKTI	GATC	8 cut(s)	301, 336, 382, 531, 540, 585, 612, 622
BstMAI	GTCTC	2 cut(s)	61, 547
BstMBI	GATC	8 cut(s)	298, 333, 379, 528, 537, 582, 609, 619
BstMWI	GCNNNNNNNGC	5 cut(s)	78, 87, 120, 123, 475
BstNI	CCWGG	1 cut(s)	422
BstSCI	CCNGG	1 cut(s)	420
BstSFI	CTRYAG	1 cut(s)	532
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	5 cut(s)	101, 104, 110, 172, 465
BstX2I	RGATCY	1 cut(s)	528
BstYI	RGATCY	1 cut(s)	528
Bsu15I	ATCGAT	2 cut(s)	35, 540
BsuI	GTATCC	1 cut(s)	362
BsuTUI	ATCGAT	2 cut(s)	35, 540
BtgI	CCRYGG	1 cut(s)	67
BtrI	CACGTC	1 cut(s)	235
BtsCI	GGATG	3 cut(s)	92, 150, 520
Cfr13I	GGNCC	1 cut(s)	29
ClaI	ATCGAT	2 cut(s)	35, 540
CseI	GACGC	3 cut(s)	84, 127, 251
CviJI	RGCY	9 cut(s)	66, 114, 123, 167, 185, 202, 550, 604, 670
CviKI_1	RGCY	9 cut(s)	66, 114, 123, 167, 185, 202, 550, 604, 670
DdeI	CTNAG	2 cut(s)	525, 551
DpnI	GATC	8 cut(s)	300, 335, 381, 530, 539, 584, 611, 621
DpnII	GATC	8 cut(s)	298, 333, 379, 528, 537, 582, 609, 619
EciI	GGCGGA	2 cut(s)	20, 504
Eco47I	GGWCC	1 cut(s)	29
EcoRI	GAATTC	2 cut(s)	257, 520
EcoRII	CCWGG	1 cut(s)	420
FaiI	YATR	7 cut(s)	158, 164, 182, 348, 395, 429, 534
FaqI	GGGAC	2 cut(s)	438, 477
FauI	CCCGC	1 cut(s)	647
FbaI	TGATCA	2 cut(s)	379, 582
Fnu4HI	GCNGC	7 cut(s)	79, 115, 118, 121, 124, 186, 479
FokI	GGATG	3 cut(s)	99, 137, 527
Fsp4HI	GCNGC	7 cut(s)	79, 115, 118, 121, 124, 186, 479
GluI	GCNGC	7 cut(s)	79, 115, 118, 121, 124, 186, 479
HapII	CCGG	1 cut(s)	331
HgaI	GACGC	3 cut(s)	84, 127, 251
HincII	GTYRAC	1 cut(s)	688
HindII	GTYRAC	1 cut(s)	688
HinfI	GANTC	2 cut(s)	37, 387
HpaII	CCGG	1 cut(s)	331
HphI	GGTGA	4 cut(s)	113, 229, 244, 389
Hpy166II	GTNNAC	2 cut(s)	343, 688
Hpy188I	TCNGA	4 cut(s)	212, 287, 365, 528
Hpy188III	TCNNGA	2 cut(s)	296, 409
Hpy8I	GTNNAC	2 cut(s)	343, 688
Hpy99I	CGWCG	2 cut(s)	245, 442
HpyAV	CCTTC	1 cut(s)	493
HpyCH4III	ACNGT	4 cut(s)	17, 107, 377, 442
HpyCH4IV	ACGT	2 cut(s)	234, 684
HpyF10VI	GCNNNNNNNGC	5 cut(s)	78, 87, 120, 123, 475
HpyF3I	CTNAG	2 cut(s)	525, 551
HpySE526I	ACGT	2 cut(s)	234, 684
Ksp22I	TGATCA	2 cut(s)	379, 582
Kzo9I	GATC	8 cut(s)	298, 333, 379, 528, 537, 582, 609, 619
LpnPI	CCDG	5 cut(s)	184, 344, 407, 434, 664
Lsp1109I	GCAGC	5 cut(s)	101, 104, 110, 172, 465
LweI	GCATC	2 cut(s)	77, 532
MaeII	ACGT	2 cut(s)	234, 684
MaeIII	GTNAC	5 cut(s)	101, 235, 317, 398, 680
MalI	GATC	8 cut(s)	300, 335, 381, 530, 539, 584, 611, 621
MboI	GATC	8 cut(s)	298, 333, 379, 528, 537, 582, 609, 619
MboII	GAAGA	2 cut(s)	61, 136
MfeI	CAATTG	1 cut(s)	470
MflI	RGATCY	1 cut(s)	528
MluCI	AATT	6 cut(s)	227, 257, 304, 470, 520, 643
MmeI	TCCRAC	1 cut(s)	427
MnlI	CCTC	8 cut(s)	164, 293, 359, 489, 505, 588, 642, 649
MseI	TTAA	4 cut(s)	11, 134, 558, 570
MslI	CAYNNNNRTG	1 cut(s)	440
MspA1I	CMGCKG	1 cut(s)	654
MspCI	CTTAAG	2 cut(s)	133, 557
MspI	CCGG	1 cut(s)	331
MspR9I	CCNGG	1 cut(s)	422
MunI	CAATTG	1 cut(s)	470
MvaI	CCWGG	1 cut(s)	422
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	5 cut(s)	78, 87, 120, 123, 475
NdeII	GATC	8 cut(s)	298, 333, 379, 528, 537, 582, 609, 619
NlaIV	GGNNCC	1 cut(s)	630
NmuCI	GTSAC	3 cut(s)	101, 235, 680
OliI	CACNNNNGTG	1 cut(s)	440
PfeI	GAWTC	2 cut(s)	37, 387
PkrI	GCNGC	7 cut(s)	80, 116, 119, 122, 125, 187, 480
Psp6I	CCWGG	1 cut(s)	420
PspGI	CCWGG	1 cut(s)	420
PspN4I	GGNNCC	1 cut(s)	630
PspPI	GGNCC	1 cut(s)	29
PsuI	RGATCY	1 cut(s)	528
RseI	CAYNNNNRTG	1 cut(s)	440
SaqAI	TTAA	4 cut(s)	11, 134, 558, 570
SatI	GCNGC	7 cut(s)	79, 115, 118, 121, 124, 186, 479
Sau3AI	GATC	8 cut(s)	298, 333, 379, 528, 537, 582, 609, 619
Sau96I	GGNCC	1 cut(s)	29
ScrFI	CCNGG	1 cut(s)	422
SfaNI	GCATC	2 cut(s)	77, 532
SfcI	CTRYAG	1 cut(s)	532
SinI	GGWCC	1 cut(s)	29
SmiMI	CAYNNNNRTG	1 cut(s)	440
SmlI	CTYRAG	3 cut(s)	133, 557, 623
SmoI	CTYRAG	3 cut(s)	133, 557, 623
Sse9I	AATT	6 cut(s)	227, 257, 304, 470, 520, 643
SsiI	CCGC	9 cut(s)	5, 44, 78, 81, 90, 120, 328, 489, 654
StyD4I	CCNGG	1 cut(s)	420
TaaI	ACNGT	4 cut(s)	17, 107, 377, 442
TaiI	ACGT	2 cut(s)	237, 687
TaqI	TCGA	6 cut(s)	35, 267, 297, 357, 410, 540
TasI	AATT	6 cut(s)	227, 257, 304, 470, 520, 643
TauI	GCSGC	2 cut(s)	81, 123
TfiI	GAWTC	2 cut(s)	37, 387
Tru1I	TTAA	4 cut(s)	11, 134, 558, 570
Tru9I	TTAA	4 cut(s)	11, 134, 558, 570
TseFI	GTSAC	3 cut(s)	101, 235, 680
TseI	GCWGC	5 cut(s)	114, 117, 123, 185, 478
Tsp45I	GTSAC	3 cut(s)	101, 235, 680
TspDTI	ATGAA	1 cut(s)	366
TspGWI	ACGGA	2 cut(s)	42, 305
Vha464I	CTTAAG	2 cut(s)	133, 557
VpaK11BI	GGWCC	1 cut(s)	29
XapI	RAATTY	3 cut(s)	227, 257, 520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.