Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000539.1

Orthogroup ID

OG0017103

Physical Location & Seq

Genomic Coordinates Reverse (-)

261983 .. 262615

Gene Structure 633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000539.1_g000056.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atgtcttcaaaagactgcggccaccacggccacaaaaagaggagagagagaatccgccgctgctgcgctgggctcctcatcttcaacttcatcctcctcgtcaccatcctcatcatctgggccatcctccagccgtccaagccccgcttcatcctccaggacgtcaccgtctacaacttcaacaacaccgtccccaacgtcttctcctccagcttccaggtcaccatctcctctcgcaaccccaacgagaagctcggaatctactacgacaagctcgacgtctatgccacctaccgcgcccagcagatcaccttctcaaccctaatcccgcccacttaccaaggccacaaggacgtcaacatctggtcgcccttcatctacggcaccgacgtccccatcgctccctacaactccattgctctcggacaggaccaggccgccggcaccgtacttttattgatcaagattgacgggcgggtgagatggaagattggaacattcatcacagggaagtaccatctctatgtgagatgtccggctttcataactttgggagccaagactaccggaattgtggtcggagaaaacgctgtcaagtaccagctggtccagcgatgcaaggttagcgtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0009506 GO:0009605 GO:0009607 GO:0009615 GO:0016020 GO:0030054 GO:0031224 GO:0031225 GO:0031226 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0050896 GO:0051607 GO:0051704 GO:0051707 GO:0055044 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LEA_2

Protein Analysis

210

Amino Acids

23.76

Weight (kDa)

9.75

Isoelectric Point (pI)

40.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017103)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11660
fragaria_vesca	FvH4_6g20170
malus_domestica	MD12G1038700.v1.1 MD14G1037400.v1.1
prunus_persica	Prupe.7G097100_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0475681
rosa_laevigata	RLG00000023824
rosa_multiflora	Rmu_sc0000539.1_g000056
rosa_roxburghii	Rroxscaffold_6G00406000
rosa_rugosa	Rorug03G0150800
rosa_samantha	Rh3CG225400 Rh3DG225900
rosa_wichuraiana	Rw3G018210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	167
AatII	GACGTC	4 cut(s)	165, 282, 357, 393
AccB1I	GGYRCC	2 cut(s)	383, 443
AccI	GTMKAC	1 cut(s)	171
AccII	CGCG	1 cut(s)	297
AciI	CCGC	8 cut(s)	18, 55, 58, 145, 295, 329, 438, 475
AcoI	YGGCCR	2 cut(s)	19, 28
AcyI	GRCGYC	4 cut(s)	162, 279, 354, 390
AfaI	GTAC	3 cut(s)	450, 515, 599
AgsI	TTSAA	3 cut(s)	9, 85, 181
AjnI	CCWGG	3 cut(s)	156, 216, 432
AjuI	GAANNNNNNNTTGG	2 cut(s)	131, 163
AluBI	AGCT	4 cut(s)	213, 253, 274, 604
AluI	AGCT	4 cut(s)	213, 253, 274, 604
AoxI	GGCC	5 cut(s)	19, 28, 120, 343, 435
ApeKI	GCWGC	2 cut(s)	60, 63
AspLEI	GCGC	2 cut(s)	68, 299
AspS9I	GGNCC	3 cut(s)	120, 430, 607
AsuHPI	GGTGA	5 cut(s)	94, 157, 214, 301, 490
AvaII	GGWCC	2 cut(s)	430, 607
BanI	GGYRCC	2 cut(s)	383, 443
BanII	GRGCYC	1 cut(s)	75
BbsI	GAAGAC	1 cut(s)	193
BbvI	GCAGC	2 cut(s)	47, 50
BccI	CCATC	6 cut(s)	113, 131, 233, 404, 477, 525
BceAI	ACGGC	3 cut(s)	43, 118, 397
BcgI	CGANNNNNNTGC	2 cut(s)	266, 300
BciT130I	CCWGG	3 cut(s)	158, 218, 434
BclI	TGATCA	1 cut(s)	459
BglI	GCCNNNNNGGC	1 cut(s)	27
BisI	GCNGC	5 cut(s)	19, 58, 61, 64, 438
BlsI	GCNGC	5 cut(s)	20, 59, 62, 65, 439
Bme1390I	CCNGG	3 cut(s)	158, 218, 434
Bme18I	GGWCC	2 cut(s)	430, 607
BmgT120I	GGNCC	3 cut(s)	120, 430, 607
BmiI	GGNNCC	4 cut(s)	74, 385, 445, 556
BmrFI	CCNGG	3 cut(s)	158, 218, 434
BmsI	GCATC	1 cut(s)	605
BpiI	GAAGAC	1 cut(s)	193
BpmI	CTGGAG	3 cut(s)	113, 140, 193
BsaHI	GRCGYC	4 cut(s)	162, 279, 354, 390
BsaJI	CCNNGG	2 cut(s)	25, 340
BsaWI	WCCGGW	1 cut(s)	566
BsaXI	ACNNNNNCTCC	2 cut(s)	188, 218
Bse118I	RCCGGY	1 cut(s)	440
Bse3DI	GCAATG	1 cut(s)	414
BseBI	CCWGG	3 cut(s)	158, 218, 434
BseDI	CCNNGG	2 cut(s)	25, 340
BseGI	GGATG	4 cut(s)	90, 105, 123, 150
BseMI	GCAATG	1 cut(s)	414
BseRI	GAGGAG	5 cut(s)	55, 65, 86, 196, 220
BseXI	GCAGC	2 cut(s)	47, 50
BseYI	CCCAGC	2 cut(s)	68, 300
Bsh1236I	CGCG	1 cut(s)	297
BshFI	GGCC	5 cut(s)	21, 30, 122, 345, 437
BshNI	GGYRCC	2 cut(s)	383, 443
BsiSI	CCGG	3 cut(s)	441, 536, 567
BslFI	GGGAC	2 cut(s)	176, 377
BsmFI	GGGAC	2 cut(s)	176, 377
BsnI	GGCC	5 cut(s)	21, 30, 122, 345, 437
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	2 cut(s)	306, 459
BspACI	CCGC	8 cut(s)	18, 55, 58, 145, 295, 329, 438, 475
BspANI	GGCC	5 cut(s)	21, 30, 122, 345, 437
BspFNI	CGCG	1 cut(s)	297
BspLI	GGNNCC	4 cut(s)	74, 385, 445, 556
BspT107I	GGYRCC	2 cut(s)	383, 443
BsrDI	GCAATG	1 cut(s)	414
BsrFI	RCCGGY	1 cut(s)	440
BssAI	RCCGGY	1 cut(s)	440
BssECI	CCNNGG	2 cut(s)	25, 340
BssMI	GATC	2 cut(s)	306, 459
BssNI	GRCGYC	4 cut(s)	162, 279, 354, 390
BssT1I	CCWWGG	1 cut(s)	340
Bst2UI	CCWGG	3 cut(s)	158, 218, 434
Bst4CI	ACNGT	3 cut(s)	169, 190, 448
BstACI	GRCGYC	4 cut(s)	162, 279, 354, 390
BstC8I	GCNNGC	1 cut(s)	442
BstDSI	CCRYGG	1 cut(s)	25
BstEII	GGTNACC	1 cut(s)	220
BstF5I	GGATG	4 cut(s)	90, 105, 123, 150
BstFNI	CGCG	1 cut(s)	297
BstHHI	GCGC	2 cut(s)	68, 299
BstKTI	GATC	2 cut(s)	309, 462
BstMBI	GATC	2 cut(s)	306, 459
BstMWI	GCNNNNNNNGC	5 cut(s)	27, 63, 139, 610, 624
BstNI	CCWGG	3 cut(s)	158, 218, 434
BstPI	GGTNACC	1 cut(s)	220
BstSCI	CCNGG	3 cut(s)	156, 216, 432
BstUI	CGCG	1 cut(s)	297
BstV1I	GCAGC	2 cut(s)	47, 50
BstV2I	GAAGAC	1 cut(s)	193
BsuRI	GGCC	5 cut(s)	21, 30, 122, 345, 437
BtgI	CCRYGG	1 cut(s)	25
BtgZI	GCGATG	2 cut(s)	382, 628
BtsCI	GGATG	4 cut(s)	90, 105, 123, 150
Cac8I	GCNNGC	1 cut(s)	442
CfoI	GCGC	2 cut(s)	68, 299
Cfr10I	RCCGGY	1 cut(s)	440
Cfr13I	GGNCC	3 cut(s)	120, 430, 607
Csp6I	GTAC	3 cut(s)	449, 514, 598
CviQI	GTAC	3 cut(s)	449, 514, 598
DpnI	GATC	2 cut(s)	308, 461
DpnII	GATC	2 cut(s)	306, 459
DrdI	GACNNNNNNGTC	1 cut(s)	167
DseDI	GACNNNNNNGTC	1 cut(s)	167
EaeI	YGGCCR	2 cut(s)	19, 28
EciI	GGCGGA	1 cut(s)	44
Eco130I	CCWWGG	1 cut(s)	340
Eco24I	GRGCYC	1 cut(s)	75
Eco47I	GGWCC	2 cut(s)	430, 607
Eco91I	GGTNACC	1 cut(s)	220
EcoO65I	GGTNACC	1 cut(s)	220
EcoRII	CCWGG	3 cut(s)	156, 216, 432
EcoT14I	CCWWGG	1 cut(s)	340
EcoT38I	GRGCYC	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	340
FaiI	YATR	4 cut(s)	285, 525, 545, 631
FalI	AAGNNNNNCTT	2 cut(s)	131, 163
FaqI	GGGAC	2 cut(s)	176, 377
FauI	CCCGC	3 cut(s)	152, 336, 468
FbaI	TGATCA	1 cut(s)	459
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	5 cut(s)	19, 58, 61, 64, 438
FokI	GGATG	4 cut(s)	77, 92, 110, 137
FriOI	GRGCYC	1 cut(s)	75
Fsp4HI	GCNGC	5 cut(s)	19, 58, 61, 64, 438
GlaI	GCGC	2 cut(s)	67, 298
GluI	GCNGC	5 cut(s)	19, 58, 61, 64, 438
GsaI	CCCAGC	2 cut(s)	72, 304
GsuI	CTGGAG	3 cut(s)	113, 140, 193
HaeIII	GGCC	5 cut(s)	21, 30, 122, 345, 437
HapII	CCGG	3 cut(s)	441, 536, 567
HhaI	GCGC	2 cut(s)	68, 299
Hin1I	GRCGYC	4 cut(s)	162, 279, 354, 390
Hin6I	GCGC	2 cut(s)	66, 297
HinP1I	GCGC	2 cut(s)	66, 297
HincII	GTYRAC	1 cut(s)	358
HindII	GTYRAC	1 cut(s)	358
HinfI	GANTC	2 cut(s)	51, 258
HpaII	CCGG	3 cut(s)	441, 536, 567
HphI	GGTGA	5 cut(s)	94, 157, 214, 301, 490
Hpy166II	GTNNAC	2 cut(s)	172, 358
Hpy188I	TCNGA	3 cut(s)	257, 425, 581
Hpy188III	TCNNGA	1 cut(s)	463
Hpy8I	GTNNAC	2 cut(s)	172, 358
Hpy99I	CGWCG	2 cut(s)	281, 392
HpyAV	CCTTC	2 cut(s)	322, 382
HpyCH4III	ACNGT	3 cut(s)	169, 190, 448
HpyCH4IV	ACGT	5 cut(s)	162, 198, 279, 354, 390
HpyCH4V	TGCA	1 cut(s)	618
HpyF10VI	GCNNNNNNNGC	5 cut(s)	27, 63, 139, 610, 624
HpySE526I	ACGT	5 cut(s)	162, 198, 279, 354, 390
Hsp92I	GRCGYC	4 cut(s)	162, 279, 354, 390
HspAI	GCGC	2 cut(s)	66, 297
KroI	GCCGGC	1 cut(s)	440
KroNI	GCCGGC	1 cut(s)	442
Ksp22I	TGATCA	1 cut(s)	459
Kzo9I	GATC	2 cut(s)	306, 459
LmnI	GCTCC	3 cut(s)	78, 406, 554
Lsp1109I	GCAGC	2 cut(s)	47, 50
LweI	GCATC	1 cut(s)	605
MaeII	ACGT	5 cut(s)	162, 198, 279, 354, 390
MaeIII	GTNAC	3 cut(s)	100, 163, 220
MalI	GATC	2 cut(s)	308, 461
MboI	GATC	2 cut(s)	306, 459
MboII	GAAGA	3 cut(s)	73, 193, 499
MhlI	GDGCHC	1 cut(s)	75
MluCI	AATT	1 cut(s)	570
MmeI	TCCRAC	1 cut(s)	559
MnlI	CCTC	9 cut(s)	33, 86, 104, 107, 119, 137, 164, 217, 241
MroNI	GCCGGC	1 cut(s)	440
MslI	CAYNNNNRTG	1 cut(s)	522
MspA1I	CMGCKG	2 cut(s)	60, 604
MspI	CCGG	3 cut(s)	441, 536, 567
MspR9I	CCNGG	3 cut(s)	158, 218, 434
MvaI	CCWGG	3 cut(s)	158, 218, 434
MvnI	CGCG	1 cut(s)	297
MwoI	GCNNNNNNNGC	5 cut(s)	27, 63, 139, 610, 624
NaeI	GCCGGC	1 cut(s)	442
NdeII	GATC	2 cut(s)	306, 459
NgoMIV	GCCGGC	1 cut(s)	440
NlaIV	GGNNCC	4 cut(s)	74, 385, 445, 556
NmuCI	GTSAC	3 cut(s)	100, 163, 220
PcsI	WCGNNNNNNNCGW	2 cut(s)	273, 387
PdiI	GCCGGC	1 cut(s)	442
PfeI	GAWTC	2 cut(s)	51, 258
PfoI	TCCNGGA	1 cut(s)	156
PkrI	GCNGC	5 cut(s)	20, 59, 62, 65, 439
Psp6I	CCWGG	3 cut(s)	156, 216, 432
PspEI	GGTNACC	1 cut(s)	220
PspFI	CCCAGC	2 cut(s)	68, 300
PspGI	CCWGG	3 cut(s)	156, 216, 432
PspN4I	GGNNCC	4 cut(s)	74, 385, 445, 556
PspPI	GGNCC	3 cut(s)	120, 430, 607
PvuII	CAGCTG	1 cut(s)	604
RsaI	GTAC	3 cut(s)	450, 515, 599
RsaNI	GTAC	3 cut(s)	449, 514, 598
RseI	CAYNNNNRTG	1 cut(s)	522
SatI	GCNGC	5 cut(s)	19, 58, 61, 64, 438
Sau3AI	GATC	2 cut(s)	306, 459
Sau96I	GGNCC	3 cut(s)	120, 430, 607
ScrFI	CCNGG	3 cut(s)	158, 218, 434
SduI	GDGCHC	1 cut(s)	75
SfaNI	GCATC	1 cut(s)	605
SfiI	GGCCNNNNNGGCC	1 cut(s)	27
SinI	GGWCC	2 cut(s)	430, 607
SmiMI	CAYNNNNRTG	1 cut(s)	522
Sse9I	AATT	1 cut(s)	570
SsiI	CCGC	8 cut(s)	18, 55, 58, 145, 295, 329, 438, 475
StyD4I	CCNGG	3 cut(s)	156, 216, 432
StyI	CCWWGG	1 cut(s)	340
TaaI	ACNGT	3 cut(s)	169, 190, 448
TaiI	ACGT	5 cut(s)	165, 201, 282, 357, 393
TaqI	TCGA	1 cut(s)	276
TasI	AATT	1 cut(s)	570
TauI	GCSGC	3 cut(s)	21, 60, 440
TfiI	GAWTC	2 cut(s)	51, 258
TseFI	GTSAC	3 cut(s)	100, 163, 220
TseI	GCWGC	2 cut(s)	60, 63
Tsp45I	GTSAC	3 cut(s)	100, 163, 220
TspDTI	ATGAA	5 cut(s)	79, 139, 364, 490, 532
VpaK11BI	GGWCC	2 cut(s)	430, 607
XmiI	GTMKAC	1 cut(s)	171
ZraI	GACGTC	4 cut(s)	163, 280, 355, 391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.