MD14G1037400.v1.1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0017103
Physical Location & Seq
Reverse (-)
3431995 .. 3432627
633 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1037400.v1.1.491

Sequence Viewer

Length: 633 bp
ATGTCAACGAAGGATTGTGGACTGCATCGCCAAAACAAGCGGCGGAGGATGTTCCGCCGCTGTTGCGCTGGCCTCCTAATCTTCAACTTCATCCTCCTTGTCACAATCCTCATCGTGTGGGCCATCCTCCAGCCCTCCAAGCCCCGCTTCGTCCTCCAAGACGTCACCGTCTTCAACTTCAACACCTCCGCCTCCAACGTCTTCTCCTCCAGCTTCCAGGTCACCATCTCCTCCCGAAACCCTAACGACAAGATTGGCATCTACTACGACAGGCTCAACATCTACGCGACCTATCGTGCGCAGCAGATCACGTTCCCGACGCTCATCCCGCCGGTATACCAAGGCCACAAGGACGTCAACATCTGGTCGCCGTTCATCTACGGCACCGACGTCCCCATCGCTCCGTACAACTCCATCGCTCTGGGGCAGGACCAGAATGCCGGGTCGGTTCTTTTGCTCATCAAGATGGACGGCCGGGTCAGGTGGAAGGTCGGCACCTTCATCTCCAGTCGGTACCATTTGTACATCCGGTGCCCCGCTTTTATCACTCTGGGTTCCAAGACCACCGGAGTTGAGGTCGGTAACAACGCTGTCAAGTACCAGCTGGTGCAGCGCTGCAAAGTGACCGTATGA

Protein Analysis

211

Amino Acids

23.91

Weight (kDa)

10.02

Isoelectric Point (pI)

50.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 75 - 173 8.7e-09 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017103)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11660
fragaria_vesca FvH4_6g20170
malus_domestica MD12G1038700.v1.1 MD14G1037400.v1.1
prunus_persica Prupe.7G097100_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0475681
rosa_laevigata RLG00000023824
rosa_multiflora Rmu_sc0000539.1_g000056
rosa_roxburghii Rroxscaffold_6G00406000
rosa_rugosa Rorug03G0150800
rosa_samantha Rh3CG225400 Rh3DG225900
rosa_wichuraiana Rw3G018210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 167, 476
AatII GACGTC 3 cut(s) 165, 357, 393
Acc16I TGCGCA 1 cut(s) 300
Acc65I GGTACC 1 cut(s) 513
AccB1I GGYRCC 4 cut(s) 383, 494, 513, 531
AccI GTMKAC 1 cut(s) 336
AccII CGCG 1 cut(s) 287
AciI CCGC 8 cut(s) 40, 43, 55, 58, 145, 189, 329, 537
AcoI YGGCCR 1 cut(s) 472
AcyI GRCGYC 3 cut(s) 162, 354, 390
AfaI GTAC 4 cut(s) 407, 515, 524, 599
AfeI AGCGCT 1 cut(s) 614
AgsI TTSAA 3 cut(s) 85, 175, 181
AjnI CCWGG 1 cut(s) 216
AjuI GAANNNNNNNTTGG 2 cut(s) 131, 163
AluBI AGCT 2 cut(s) 213, 604
AluI AGCT 2 cut(s) 213, 604
Aor51HI AGCGCT 1 cut(s) 614
AoxI GGCC 4 cut(s) 70, 120, 343, 472
ApeKI GCWGC 3 cut(s) 301, 610, 615
Asp718I GGTACC 1 cut(s) 513
AspLEI GCGC 3 cut(s) 68, 301, 615
AspS9I GGNCC 2 cut(s) 120, 430
AsuC2I CCSGG 2 cut(s) 442, 476
AsuHPI GGTGA 2 cut(s) 157, 214
AvaII GGWCC 1 cut(s) 430
BaeGI GKGCMC 1 cut(s) 536
BanI GGYRCC 4 cut(s) 383, 494, 513, 531
BbsI GAAGAC 2 cut(s) 163, 193
BbvI GCAGC 3 cut(s) 313, 602, 622
BccI CCATC 5 cut(s) 131, 233, 404, 422, 460
BceAI ACGGC 3 cut(s) 355, 397, 487
BciT130I CCWGG 1 cut(s) 218
BcnI CCSGG 2 cut(s) 442, 476
BfoI RGCGCY 1 cut(s) 616
BisI GCNGC 5 cut(s) 41, 58, 302, 611, 616
BlsI GCNGC 5 cut(s) 42, 59, 303, 612, 617
Bme1390I CCNGG 3 cut(s) 218, 442, 476
Bme18I GGWCC 1 cut(s) 430
BmgT120I GGNCC 2 cut(s) 120, 430
BmiI GGNNCC 5 cut(s) 385, 496, 515, 533, 556
BmrFI CCNGG 3 cut(s) 218, 442, 476
BmsI GCATC 2 cut(s) 34, 267
BpiI GAAGAC 2 cut(s) 163, 193
BpmI CTGGAG 3 cut(s) 113, 193, 490
BpuMI CCSGG 2 cut(s) 442, 476
BsaBI GATNNNNATC 1 cut(s) 257
BsaHI GRCGYC 3 cut(s) 162, 354, 390
BsaJI CCNNGG 1 cut(s) 340
BsaWI WCCGGW 2 cut(s) 528, 566
BsaXI ACNNNNNCTCC 4 cut(s) 188, 218, 561, 591
Bse118I RCCGGY 1 cut(s) 331
Bse1I ACTGG 1 cut(s) 507
Bse8I GATNNNNATC 1 cut(s) 257
BseBI CCWGG 1 cut(s) 218
BseDI CCNNGG 1 cut(s) 340
BseGI GGATG 5 cut(s) 54, 90, 123, 324, 525
BseJI GATNNNNATC 1 cut(s) 257
BseNI ACTGG 1 cut(s) 507
BseRI GAGGAG 2 cut(s) 196, 220
BseSI GKGCMC 1 cut(s) 536
BseX3I CGGCCG 1 cut(s) 472
BseXI GCAGC 3 cut(s) 313, 602, 622
BsgI GTGCAG 1 cut(s) 629
Bsh1236I CGCG 1 cut(s) 287
Bsh1285I CGRYCG 1 cut(s) 475
BshFI GGCC 4 cut(s) 72, 122, 345, 474
BshNI GGYRCC 4 cut(s) 383, 494, 513, 531
BsiEI CGRYCG 1 cut(s) 475
BsiSI CCGG 5 cut(s) 332, 441, 475, 529, 567
BslFI GGGAC 1 cut(s) 377
BsmFI GGGAC 1 cut(s) 377
BsmI GAATGC 1 cut(s) 442
BsnI GGCC 4 cut(s) 72, 122, 345, 474
Bsp1286I GDGCHC 1 cut(s) 536
Bsp1407I TGTACA 1 cut(s) 522
Bsp143I GATC 1 cut(s) 306
BspACI CCGC 8 cut(s) 40, 43, 55, 58, 145, 189, 329, 537
BspANI GGCC 4 cut(s) 72, 122, 345, 474
BspFNI CGCG 1 cut(s) 287
BspLI GGNNCC 5 cut(s) 385, 496, 515, 533, 556
BspT107I GGYRCC 4 cut(s) 383, 494, 513, 531
BsrFI RCCGGY 1 cut(s) 331
BsrGI TGTACA 1 cut(s) 522
BsrI ACTGG 1 cut(s) 507
BssAI RCCGGY 1 cut(s) 331
BssECI CCNNGG 1 cut(s) 340
BssMI GATC 1 cut(s) 306
BssNAI GTATAC 1 cut(s) 337
BssNI GRCGYC 3 cut(s) 162, 354, 390
BssT1I CCWWGG 1 cut(s) 340
Bst1107I GTATAC 1 cut(s) 337
Bst2UI CCWGG 1 cut(s) 218
Bst4CI ACNGT 2 cut(s) 169, 628
BstACI GRCGYC 3 cut(s) 162, 354, 390
BstAUI TGTACA 1 cut(s) 522
BstC8I GCNNGC 1 cut(s) 70
BstEII GGTNACC 1 cut(s) 220
BstF5I GGATG 5 cut(s) 54, 90, 123, 324, 525
BstFNI CGCG 1 cut(s) 287
BstH2I RGCGCY 1 cut(s) 616
BstHHI GCGC 3 cut(s) 68, 301, 615
BstKTI GATC 1 cut(s) 309
BstMBI GATC 1 cut(s) 306
BstMCI CGRYCG 1 cut(s) 475
BstMWI GCNNNNNNNGC 4 cut(s) 63, 139, 328, 610
BstNI CCWGG 1 cut(s) 218
BstPI GGTNACC 1 cut(s) 220
BstSCI CCNGG 3 cut(s) 216, 440, 474
BstSLI GKGCMC 1 cut(s) 536
BstUI CGCG 1 cut(s) 287
BstV1I GCAGC 3 cut(s) 313, 602, 622
BstV2I GAAGAC 2 cut(s) 163, 193
BstXI CCANNNNNNTGG 1 cut(s) 421
BstZ17I GTATAC 1 cut(s) 337
BstZI CGGCCG 1 cut(s) 472
BsuRI GGCC 4 cut(s) 72, 122, 345, 474
BtgZI GCGATG 3 cut(s) 11, 382, 400
BtsCI GGATG 5 cut(s) 54, 90, 123, 324, 525
Cac8I GCNNGC 1 cut(s) 70
CfoI GCGC 3 cut(s) 68, 301, 615
Cfr10I RCCGGY 1 cut(s) 331
Cfr13I GGNCC 2 cut(s) 120, 430
CseI GACGC 1 cut(s) 328
Csp6I GTAC 4 cut(s) 406, 514, 523, 598
CspCI CAANNNNNGTGG 2 cut(s) 553, 588
CviJI RGCY 9 cut(s) 72, 122, 133, 142, 213, 274, 345, 474, 604
CviKI_1 RGCY 9 cut(s) 72, 122, 133, 142, 213, 274, 345, 474, 604
CviQI GTAC 4 cut(s) 406, 514, 523, 598
DpnI GATC 1 cut(s) 308
DpnII GATC 1 cut(s) 306
DrdI GACNNNNNNGTC 2 cut(s) 167, 476
DseDI GACNNNNNNGTC 2 cut(s) 167, 476
EaeI YGGCCR 1 cut(s) 472
EagI CGGCCG 1 cut(s) 472
EciI GGCGGA 3 cut(s) 44, 58, 178
EclXI CGGCCG 1 cut(s) 472
Eco130I CCWWGG 1 cut(s) 340
Eco47I GGWCC 1 cut(s) 430
Eco47III AGCGCT 1 cut(s) 614
Eco52I CGGCCG 1 cut(s) 472
Eco91I GGTNACC 1 cut(s) 220
EcoO65I GGTNACC 1 cut(s) 220
EcoRII CCWGG 1 cut(s) 216
EcoT14I CCWWGG 1 cut(s) 340
ErhI CCWWGG 1 cut(s) 340
FaiI YATR 2 cut(s) 337, 631
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FaqI GGGAC 1 cut(s) 377
FauI CCCGC 3 cut(s) 152, 336, 544
FblI GTMKAC 1 cut(s) 336
Fnu4HI GCNGC 5 cut(s) 41, 58, 302, 611, 616
FokI GGATG 5 cut(s) 61, 77, 110, 311, 512
Fsp4HI GCNGC 5 cut(s) 41, 58, 302, 611, 616
FspI TGCGCA 1 cut(s) 300
GlaI GCGC 3 cut(s) 67, 300, 614
GluI GCNGC 5 cut(s) 41, 58, 302, 611, 616
GsuI CTGGAG 3 cut(s) 113, 193, 490
HaeII RGCGCY 1 cut(s) 616
HaeIII GGCC 4 cut(s) 72, 122, 345, 474
HapII CCGG 5 cut(s) 332, 441, 475, 529, 567
HgaI GACGC 1 cut(s) 328
HhaI GCGC 3 cut(s) 68, 301, 615
Hin1I GRCGYC 3 cut(s) 162, 354, 390
Hin6I GCGC 3 cut(s) 66, 299, 613
HinP1I GCGC 3 cut(s) 66, 299, 613
HincII GTYRAC 2 cut(s) 6, 358
HindII GTYRAC 2 cut(s) 6, 358
HpaII CCGG 5 cut(s) 332, 441, 475, 529, 567
HphI GGTGA 2 cut(s) 157, 214
Hpy166II GTNNAC 4 cut(s) 6, 20, 337, 358
Hpy188III TCNNGA 3 cut(s) 234, 316, 463
Hpy8I GTNNAC 4 cut(s) 6, 20, 337, 358
Hpy99I CGWCG 2 cut(s) 322, 392
HpyAV CCTTC 3 cut(s) 4, 481, 508
HpyCH4III ACNGT 2 cut(s) 169, 628
HpyCH4IV ACGT 5 cut(s) 162, 198, 311, 354, 390
HpyCH4V TGCA 3 cut(s) 25, 610, 618
HpyF10VI GCNNNNNNNGC 4 cut(s) 63, 139, 328, 610
HpySE526I ACGT 5 cut(s) 162, 198, 311, 354, 390
Hsp92I GRCGYC 3 cut(s) 162, 354, 390
HspAI GCGC 3 cut(s) 66, 299, 613
KpnI GGTACC 1 cut(s) 517
Kzo9I GATC 1 cut(s) 306
LmnI GCTCC 1 cut(s) 406
Lsp1109I GCAGC 3 cut(s) 313, 602, 622
LweI GCATC 2 cut(s) 34, 267
MaeII ACGT 5 cut(s) 162, 198, 311, 354, 390
MaeIII GTNAC 5 cut(s) 100, 163, 220, 581, 622
MalI GATC 1 cut(s) 308
MboI GATC 1 cut(s) 306
MboII GAAGA 3 cut(s) 73, 163, 193
MhlI GDGCHC 1 cut(s) 536
MmeI TCCRAC 1 cut(s) 219
MslI CAYNNNNRTG 1 cut(s) 464
MspA1I CMGCKG 2 cut(s) 60, 604
MspI CCGG 5 cut(s) 332, 441, 475, 529, 567
MspR9I CCNGG 3 cut(s) 218, 442, 476
Mva1269I GAATGC 1 cut(s) 442
MvaI CCWGG 1 cut(s) 218
MvnI CGCG 1 cut(s) 287
MwoI GCNNNNNNNGC 4 cut(s) 63, 139, 328, 610
NciI CCSGG 2 cut(s) 442, 476
NdeII GATC 1 cut(s) 306
NlaIV GGNNCC 5 cut(s) 385, 496, 515, 533, 556
NmuCI GTSAC 4 cut(s) 100, 163, 220, 622
NsbI TGCGCA 1 cut(s) 300
PcsI WCGNNNNNNNCGW 1 cut(s) 387
PctI GAATGC 1 cut(s) 442
PkrI GCNGC 5 cut(s) 42, 59, 303, 612, 617
Psp6I CCWGG 1 cut(s) 216
PspEI GGTNACC 1 cut(s) 220
PspGI CCWGG 1 cut(s) 216
PspN4I GGNNCC 5 cut(s) 385, 496, 515, 533, 556
PspPI GGNCC 2 cut(s) 120, 430
PvuII CAGCTG 1 cut(s) 604
RsaI GTAC 4 cut(s) 407, 515, 524, 599
RsaNI GTAC 4 cut(s) 406, 514, 523, 598
RseI CAYNNNNRTG 1 cut(s) 464
SatI GCNGC 5 cut(s) 41, 58, 302, 611, 616
Sau3AI GATC 1 cut(s) 306
Sau96I GGNCC 2 cut(s) 120, 430
ScrFI CCNGG 3 cut(s) 218, 442, 476
SduI GDGCHC 1 cut(s) 536
SfaNI GCATC 2 cut(s) 34, 267
SinI GGWCC 1 cut(s) 430
SmiMI CAYNNNNRTG 1 cut(s) 464
SsiI CCGC 8 cut(s) 40, 43, 55, 58, 145, 189, 329, 537
StyD4I CCNGG 3 cut(s) 216, 440, 474
StyI CCWWGG 1 cut(s) 340
TaaI ACNGT 2 cut(s) 169, 628
TaiI ACGT 5 cut(s) 165, 201, 314, 357, 393
TatI WGTACW 1 cut(s) 522
TauI GCSGC 2 cut(s) 43, 60
TseFI GTSAC 4 cut(s) 100, 163, 220, 622
TseI GCWGC 3 cut(s) 301, 610, 615
Tsp45I GTSAC 4 cut(s) 100, 163, 220, 622
TspDTI ATGAA 3 cut(s) 79, 364, 490
TspGWI ACGGA 1 cut(s) 393
VpaK11BI GGWCC 1 cut(s) 430
XmiI GTMKAC 1 cut(s) 336
ZraI GACGTC 3 cut(s) 163, 355, 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.