RLG00000023824

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0017103
Physical Location & Seq
Forward (+)
28756258 .. 28759272
3015 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023824

Sequence Viewer

Length: 708 bp
ATGTCTTCAAAAGACTGCGGCAACCACGGCCACAAGAAGTGGAGAAAGAGAATCCGGCGCTGCTGTGCTGGGCTTCTCATCTTCAACTTCATCCTCCTCGTCACCATCCTCATCATCTGGGCCATCCTCCAGCCGTCCAAGCCCCGCTTCATCCTCCAGGACGTCACCGTCTACAACTTCAACAACACCGTCCCCAACGTCTTCTCCTCCAGCTTCCAGGTCACCATCTCCTCTCGCAACCCCAACGACAAGCTCGGAATCTACTACGACAAGCTCGACGTCTACGCCACTTACCGCTCCCAGCAGATCACCTTCTCAACCCTAATCCCGCCCACTTATCAAGGCCACAAGGACGTCAACATCTGGTCGCCCTTCATCTACGGCACCAACGTCCCCATCGCTCCCTACAACTCCATTGCTCTCGGACAGGACCAGGCCGCGGGCACCGTACTTTTGTTGATCAAGATTGACGGGCGGGTGAGATGGAAGATTGGAACATTCATCACCGGGAAGTACCATCTCTATGTGAGATGTCCGGCTTTCATAACTTTGGGAGCCAAGACTACCGGAATTGTGGTCGGAGAAAACGCTATCAAGTACCAGCTCGTCCAGCGATGCAAGACAACTACCGAGATGTGGAGCGAGTGTAATGAGATTGAGTATGATGAACAGTTTTATGAGGTTGATAGGTTCGGCCATAATATTTAG

Protein Analysis

236

Amino Acids

26.96

Weight (kDa)

9.26

Isoelectric Point (pI)

46.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_2 PF03168 75 - 177 1.2e-09 Late embryogenesis abundant protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017103)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G11660
fragaria_vesca FvH4_6g20170
malus_domestica MD12G1038700.v1.1 MD14G1037400.v1.1
prunus_persica Prupe.7G097100_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0475681
rosa_laevigata RLG00000023824
rosa_multiflora Rmu_sc0000539.1_g000056
rosa_roxburghii Rroxscaffold_6G00406000
rosa_rugosa Rorug03G0150800
rosa_samantha Rh3CG225400 Rh3DG225900
rosa_wichuraiana Rw3G018210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 167
AatII GACGTC 3 cut(s) 165, 282, 357
AccB1I GGYRCC 2 cut(s) 383, 443
AccBSI CCGCTC 1 cut(s) 297
AccI GTMKAC 2 cut(s) 171, 282
AccII CGCG 1 cut(s) 440
AciI CCGC 7 cut(s) 18, 145, 295, 329, 438, 440, 475
AcoI YGGCCR 2 cut(s) 28, 694
AcyI GRCGYC 3 cut(s) 162, 279, 354
AfaI GTAC 3 cut(s) 450, 515, 599
AfiI CCNNNNNNNGG 2 cut(s) 439, 636
AgsI TTSAA 3 cut(s) 9, 85, 181
AjnI CCWGG 3 cut(s) 156, 216, 432
AjuI GAANNNNNNNTTGG 2 cut(s) 131, 163
AluBI AGCT 4 cut(s) 213, 253, 274, 604
AluI AGCT 4 cut(s) 213, 253, 274, 604
AoxI GGCC 5 cut(s) 28, 120, 343, 435, 694
ApeKI GCWGC 1 cut(s) 60
AspLEI GCGC 1 cut(s) 60
AspS9I GGNCC 2 cut(s) 120, 430
AsuC2I CCSGG 1 cut(s) 508
AsuHPI GGTGA 6 cut(s) 94, 157, 214, 301, 490, 496
AvaII GGWCC 1 cut(s) 430
BaeGI GKGCMC 1 cut(s) 446
BanI GGYRCC 2 cut(s) 383, 443
BbsI GAAGAC 1 cut(s) 193
BbvI GCAGC 1 cut(s) 47
BccI CCATC 6 cut(s) 113, 131, 233, 404, 477, 525
BceAI ACGGC 3 cut(s) 43, 118, 397
BciT130I CCWGG 3 cut(s) 158, 218, 434
BclI TGATCA 1 cut(s) 459
BcnI CCSGG 1 cut(s) 508
BfoI RGCGCY 1 cut(s) 61
BisI GCNGC 3 cut(s) 19, 61, 438
BlsI GCNGC 3 cut(s) 20, 62, 439
Bme1390I CCNGG 4 cut(s) 158, 218, 434, 508
Bme18I GGWCC 1 cut(s) 430
BmgT120I GGNCC 2 cut(s) 120, 430
BmiI GGNNCC 3 cut(s) 385, 445, 556
BmrFI CCNGG 4 cut(s) 158, 218, 434, 508
BmsI GCATC 1 cut(s) 605
BpiI GAAGAC 1 cut(s) 193
BpmI CTGGAG 3 cut(s) 113, 140, 193
BpuMI CCSGG 1 cut(s) 508
BsaHI GRCGYC 3 cut(s) 162, 279, 354
BsaJI CCNNGG 2 cut(s) 25, 438
BsaWI WCCGGW 1 cut(s) 566
BsaXI ACNNNNNCTCC 4 cut(s) 188, 218, 631, 661
Bsc4I CCNNNNNNNGG 2 cut(s) 439, 636
Bse3DI GCAATG 1 cut(s) 414
BseBI CCWGG 3 cut(s) 158, 218, 434
BseDI CCNNGG 2 cut(s) 25, 438
BseGI GGATG 4 cut(s) 90, 105, 123, 150
BseLI CCNNNNNNNGG 2 cut(s) 439, 636
BseMI GCAATG 1 cut(s) 414
BseRI GAGGAG 3 cut(s) 86, 196, 220
BseSI GKGCMC 1 cut(s) 446
BseXI GCAGC 1 cut(s) 47
BseYI CCCAGC 2 cut(s) 68, 300
Bsh1236I CGCG 1 cut(s) 440
BshFI GGCC 5 cut(s) 30, 122, 345, 437, 696
BshNI GGYRCC 2 cut(s) 383, 443
BsiSI CCGG 4 cut(s) 55, 507, 536, 567
BslFI GGGAC 2 cut(s) 176, 377
BslI CCNNNNNNNGG 2 cut(s) 439, 636
BsmFI GGGAC 2 cut(s) 176, 377
BsnI GGCC 5 cut(s) 30, 122, 345, 437, 696
Bsp1286I GDGCHC 1 cut(s) 446
Bsp143I GATC 2 cut(s) 306, 459
BspACI CCGC 7 cut(s) 18, 145, 295, 329, 438, 440, 475
BspANI GGCC 5 cut(s) 30, 122, 345, 437, 696
BspFNI CGCG 1 cut(s) 440
BspLI GGNNCC 3 cut(s) 385, 445, 556
BspT107I GGYRCC 2 cut(s) 383, 443
BsrBI CCGCTC 1 cut(s) 297
BsrDI GCAATG 1 cut(s) 414
BssECI CCNNGG 2 cut(s) 25, 438
BssMI GATC 2 cut(s) 306, 459
BssNI GRCGYC 3 cut(s) 162, 279, 354
Bst2UI CCWGG 3 cut(s) 158, 218, 434
Bst4CI ACNGT 4 cut(s) 169, 190, 448, 672
BstACI GRCGYC 3 cut(s) 162, 279, 354
BstC8I GCNNGC 1 cut(s) 442
BstDSI CCRYGG 2 cut(s) 25, 438
BstEII GGTNACC 1 cut(s) 220
BstF5I GGATG 4 cut(s) 90, 105, 123, 150
BstFNI CGCG 1 cut(s) 440
BstH2I RGCGCY 1 cut(s) 61
BstHHI GCGC 1 cut(s) 60
BstKTI GATC 2 cut(s) 309, 462
BstMBI GATC 2 cut(s) 306, 459
BstMWI GCNNNNNNNGC 3 cut(s) 27, 139, 610
BstNI CCWGG 3 cut(s) 158, 218, 434
BstPI GGTNACC 1 cut(s) 220
BstSCI CCNGG 4 cut(s) 156, 216, 432, 506
BstSLI GKGCMC 1 cut(s) 446
BstUI CGCG 1 cut(s) 440
BstV1I GCAGC 1 cut(s) 47
BstV2I GAAGAC 1 cut(s) 193
BsuRI GGCC 5 cut(s) 30, 122, 345, 437, 696
BtgI CCRYGG 2 cut(s) 25, 438
BtgZI GCGATG 2 cut(s) 382, 628
BtsCI GGATG 4 cut(s) 90, 105, 123, 150
Cac8I GCNNGC 1 cut(s) 442
CfoI GCGC 1 cut(s) 60
Cfr13I GGNCC 2 cut(s) 120, 430
Cfr42I CCGCGG 1 cut(s) 441
Csp6I GTAC 3 cut(s) 449, 514, 598
CviQI GTAC 3 cut(s) 449, 514, 598
DpnI GATC 2 cut(s) 308, 461
DpnII GATC 2 cut(s) 306, 459
DrdI GACNNNNNNGTC 1 cut(s) 167
DseDI GACNNNNNNGTC 1 cut(s) 167
EaeI YGGCCR 2 cut(s) 28, 694
Eco47I GGWCC 1 cut(s) 430
Eco91I GGTNACC 1 cut(s) 220
EcoO65I GGTNACC 1 cut(s) 220
EcoRII CCWGG 3 cut(s) 156, 216, 432
FaiI YATR 5 cut(s) 525, 545, 663, 678, 699
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FaqI GGGAC 2 cut(s) 176, 377
FauI CCCGC 4 cut(s) 152, 336, 433, 468
FbaI TGATCA 1 cut(s) 459
FblI GTMKAC 2 cut(s) 171, 282
Fnu4HI GCNGC 3 cut(s) 19, 61, 438
FokI GGATG 4 cut(s) 77, 92, 110, 137
Fsp4HI GCNGC 3 cut(s) 19, 61, 438
GlaI GCGC 1 cut(s) 59
GluI GCNGC 3 cut(s) 19, 61, 438
GsaI CCCAGC 2 cut(s) 72, 304
GsuI CTGGAG 3 cut(s) 113, 140, 193
HaeII RGCGCY 1 cut(s) 61
HaeIII GGCC 5 cut(s) 30, 122, 345, 437, 696
HapII CCGG 4 cut(s) 55, 507, 536, 567
HhaI GCGC 1 cut(s) 60
Hin1I GRCGYC 3 cut(s) 162, 279, 354
Hin6I GCGC 1 cut(s) 58
HinP1I GCGC 1 cut(s) 58
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HinfI GANTC 2 cut(s) 51, 258
HpaII CCGG 4 cut(s) 55, 507, 536, 567
HphI GGTGA 6 cut(s) 94, 157, 214, 301, 490, 496
Hpy166II GTNNAC 3 cut(s) 172, 283, 358
Hpy188I TCNGA 3 cut(s) 257, 425, 581
Hpy188III TCNNGA 1 cut(s) 463
Hpy8I GTNNAC 3 cut(s) 172, 283, 358
Hpy99I CGWCG 1 cut(s) 281
HpyAV CCTTC 2 cut(s) 322, 382
HpyCH4III ACNGT 4 cut(s) 169, 190, 448, 672
HpyCH4IV ACGT 5 cut(s) 162, 198, 279, 354, 390
HpyCH4V TGCA 1 cut(s) 618
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 139, 610
HpySE526I ACGT 5 cut(s) 162, 198, 279, 354, 390
Hsp92I GRCGYC 3 cut(s) 162, 279, 354
HspAI GCGC 1 cut(s) 58
Ksp22I TGATCA 1 cut(s) 459
KspI CCGCGG 1 cut(s) 441
Kzo9I GATC 2 cut(s) 306, 459
LmnI GCTCC 4 cut(s) 302, 406, 554, 639
Lsp1109I GCAGC 1 cut(s) 47
LweI GCATC 1 cut(s) 605
MaeII ACGT 5 cut(s) 162, 198, 279, 354, 390
MaeIII GTNAC 3 cut(s) 100, 163, 220
MalI GATC 2 cut(s) 308, 461
MbiI CCGCTC 1 cut(s) 297
MboI GATC 2 cut(s) 306, 459
MboII GAAGA 3 cut(s) 73, 193, 499
MhlI GDGCHC 1 cut(s) 446
MluCI AATT 1 cut(s) 570
MmeI TCCRAC 1 cut(s) 559
MnlI CCTC 8 cut(s) 104, 107, 119, 137, 164, 217, 241, 673
MslI CAYNNNNRTG 1 cut(s) 522
MspA1I CMGCKG 1 cut(s) 440
MspI CCGG 4 cut(s) 55, 507, 536, 567
MspR9I CCNGG 4 cut(s) 158, 218, 434, 508
MvaI CCWGG 3 cut(s) 158, 218, 434
MvnI CGCG 1 cut(s) 440
MwoI GCNNNNNNNGC 3 cut(s) 27, 139, 610
NciI CCSGG 1 cut(s) 508
NdeII GATC 2 cut(s) 306, 459
NlaIV GGNNCC 3 cut(s) 385, 445, 556
NmuCI GTSAC 3 cut(s) 100, 163, 220
PcsI WCGNNNNNNNCGW 2 cut(s) 273, 387
PfeI GAWTC 2 cut(s) 51, 258
PfoI TCCNGGA 1 cut(s) 156
PkrI GCNGC 3 cut(s) 20, 62, 439
Psp6I CCWGG 3 cut(s) 156, 216, 432
PspEI GGTNACC 1 cut(s) 220
PspFI CCCAGC 2 cut(s) 68, 300
PspGI CCWGG 3 cut(s) 156, 216, 432
PspN4I GGNNCC 3 cut(s) 385, 445, 556
PspPI GGNCC 2 cut(s) 120, 430
RsaI GTAC 3 cut(s) 450, 515, 599
RsaNI GTAC 3 cut(s) 449, 514, 598
RseI CAYNNNNRTG 1 cut(s) 522
SacII CCGCGG 1 cut(s) 441
SatI GCNGC 3 cut(s) 19, 61, 438
Sau3AI GATC 2 cut(s) 306, 459
Sau96I GGNCC 2 cut(s) 120, 430
ScrFI CCNGG 4 cut(s) 158, 218, 434, 508
SduI GDGCHC 1 cut(s) 446
SfaNI GCATC 1 cut(s) 605
Sfr303I CCGCGG 1 cut(s) 441
SgrBI CCGCGG 1 cut(s) 441
SinI GGWCC 1 cut(s) 430
SmiMI CAYNNNNRTG 1 cut(s) 522
Sse9I AATT 1 cut(s) 570
SsiI CCGC 7 cut(s) 18, 145, 295, 329, 438, 440, 475
SspI AATATT 1 cut(s) 703
StyD4I CCNGG 4 cut(s) 156, 216, 432, 506
TaaI ACNGT 4 cut(s) 169, 190, 448, 672
TaiI ACGT 5 cut(s) 165, 201, 282, 357, 393
TaqI TCGA 1 cut(s) 276
TasI AATT 1 cut(s) 570
TauI GCSGC 2 cut(s) 21, 440
TfiI GAWTC 2 cut(s) 51, 258
TseFI GTSAC 3 cut(s) 100, 163, 220
TseI GCWGC 1 cut(s) 60
Tsp45I GTSAC 3 cut(s) 100, 163, 220
TspDTI ATGAA 6 cut(s) 79, 139, 364, 490, 532, 681
VpaK11BI GGWCC 1 cut(s) 430
XmiI GTMKAC 2 cut(s) 171, 282
ZraI GACGTC 3 cut(s) 163, 280, 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.