Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012445

Physical Location & Seq

Genomic Coordinates Forward (+)

3758452 .. 3760751

Gene Structure 2300 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G11900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGGCGATCAAAGACCTGACGGCGACGACCGGTGATTCATCTCTTCCTTTAATAAAATCTCCGCCGTCTGAAACAACCGGCGGTGACAGAACCTCTGCTCTTCAAACGCTCGGTAACATTATCGTCTCCATCGTCGGTACAGGCGTCCTTGGTCTTCCTTACGCATTCCGCATCGCCGGTTGGTTAGCCGGATCTCTCGGTGTCATTATCGTCGGATTCGCCACCTATTACTGCATGCTCCTCCTCATTCAGTGCAGAGATAAGCTAGAATCGGAAGAAGGAGAAGAAGAATCGAAAACTTATGGTGATTTAGGTTTCAAATGTATGGGAACAAAAGGTCGATACTTAACCGAATTCCTCATTTTCACTGCTCAATGTGGTGGATCAGTAGCGTATTTAGTGTTCATAGGTCGAAACTTGTCATCCATATTTAGTTCGTATGGGTTAAGTATGGTTTCTTTCATATTGATTCTGGTTCCAATCGAAGTTGGATTGTCGTGGATCACTTCTTTATCAGCTCTCTCGCCTTTCAGTATCTTTGCTGATATATGCAACATCATAGCAATGTGTTTTGTTGTCAAAGAAAATGTGGAAATGGTGATTGAAGGAGACTTCTCGTTTAGTGATAGAACTGCTATTTCGTCTACCATTGGTGGTTTACCTTTTGCTGGAGGAGTTGCGGTGTTCTGTTTTGAGGGTTTTGCAATGACGTTGGCTTTGGAGAGTTCTATGAGGGAAAGAGAAGCTTTCCCTAAATTGTTAGCTAAAGTGCTTGCCGGGATTACGTTTGTCTATGTGTTGTTCGGGTTTTGTGGTTATATGGCTTATGGTGATCAAACAAAGGATATCATCACTCTTAACCTCCCAAATAATTGGTCTGCCATTGCTGTTCAGATTGGGTTATGTGTGGGATTGACGTTTACATTTCCGATCATGGTACATCCGCTTAACGAGATCATAGAGCAGAAACTGAAGAGGATAGACTGGCTTCAAAAGCATCATAATGGGTACAGCAACGAAACAGGTTCAGTCTCAAAATTTGCAATCTTTACAACGAGGACACTTTTGGTGGTAGGACTTGCAGCAATCGCGAGTTTAGTCCCAGGGTTTGGTACATTTGCATCTCTTGTTGGAAGTACTTTGTGCGCACTCATCTCCTTTGTGTTGCCGGCTTCTTATCACCTCACGCTGCTCGGTCCATCACTAAATGTATGGAACAAATCCATCGACGTATTCATTGTGATTTGCGGGTTGATCTTTGCTGTTTATGGTACGTACAACACAATCGTCGGAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0009605 GO:0009607 GO:0009624 GO:0012505 GO:0015075 GO:0015171 GO:0015173 GO:0015175 GO:0015318 GO:0015711 GO:0015801 GO:0015804 GO:0015849 GO:0016020 GO:0022857 GO:0031984 GO:0034220 GO:0042175 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:0098827 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

432

Amino Acids

46.47

Weight (kDa)

5.34

Isoelectric Point (pI)

33.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	30 - 429	1.1e-115	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11900 AT3G11900
fragaria_vesca	FvH4_6g21140 FvH4_6g21140 FvH4_6g21140
malus_domestica	MD12G1047000.v1.1
prunus_persica	Prupe.7G088200_v2.0.a1 Prupe.7G088200_v2.0.a1
pyrus_communis	pycom12g04050
rosa_chinensis	RchiOBHm_Chr3g0477611
rosa_laevigata	RLG00000023706
rosa_multiflora	Rmu_sc0000775.1_g000010
rosa_roxburghii	Rroxscaffold_6G00403830
rosa_rugosa	Rorug03G0162300
rosa_samantha	Rh3AG212300 Rh3BG246000 Rh3CG239600 Rh3DG239100
rosa_wichuraiana	Rw3G019220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1147
AccB7I	CCANNNNNTGG	1 cut(s)	1109
AccI	GTMKAC	1 cut(s)	644
AccII	CGCG	1 cut(s)	1091
AciI	CCGC	6 cut(s)	62, 81, 169, 680, 944, 1248
AclWI	GGATC	3 cut(s)	199, 391, 509
AcsI	RAATTY	2 cut(s)	353, 1037
AcuI	CTGAAG	1 cut(s)	992
AcyI	GRCGYC	1 cut(s)	144
AfaI	GTAC	7 cut(s)	139, 939, 1010, 1114, 1138, 1273, 1277
AfiI	CCNNNNNNNGG	2 cut(s)	668, 1109
AgeI	ACCGGT	1 cut(s)	29
AgsI	TTSAA	4 cut(s)	104, 319, 605, 992
AjnI	CCWGG	1 cut(s)	1102
AluBI	AGCT	4 cut(s)	265, 518, 746, 764
AluI	AGCT	4 cut(s)	265, 518, 746, 764
Alw26I	GTCTC	3 cut(s)	130, 603, 1036
AlwI	GGATC	3 cut(s)	199, 391, 509
AlwNI	CAGNNNCTG	1 cut(s)	970
ApeKI	GCWGC	2 cut(s)	1082, 1189
ApoI	RAATTY	2 cut(s)	353, 1037
ArsI	GACNNNNNNTTYG	4 cut(s)	700, 732, 860, 892
AsiGI	ACCGGT	1 cut(s)	29
AspLEI	GCGC	1 cut(s)	1148
AspS9I	GGNCC	1 cut(s)	1196
AsuC2I	CCSGG	1 cut(s)	778
AsuHPI	GGTGA	6 cut(s)	44, 95, 317, 610, 842, 1172
AvaII	GGWCC	1 cut(s)	1196
BaeI	ACNNNNGTAYC	2 cut(s)	129, 162
BbsI	GAAGAC	1 cut(s)	146
BbvI	GCAGC	2 cut(s)	1094, 1176
BccI	CCATC	3 cut(s)	137, 1207, 1232
BceAI	ACGGC	2 cut(s)	36, 49
BciT130I	CCWGG	1 cut(s)	1104
BclI	TGATCA	1 cut(s)	832
BcnI	CCSGG	1 cut(s)	778
BcoDI	GTCTC	3 cut(s)	130, 603, 1036
BfaI	CTAG	1 cut(s)	266
BisI	GCNGC	2 cut(s)	1083, 1190
BlsI	GCNGC	2 cut(s)	1084, 1191
BmcAI	AGTACT	1 cut(s)	1138
Bme1390I	CCNGG	2 cut(s)	778, 1104
Bme18I	GGWCC	1 cut(s)	1196
BmgT120I	GGNCC	1 cut(s)	1196
BmiI	GGNNCC	1 cut(s)	477
BmrFI	CCNGG	2 cut(s)	778, 1104
BmsI	GCATC	3 cut(s)	180, 1006, 1130
BpiI	GAAGAC	1 cut(s)	146
BpmI	CTGGAG	1 cut(s)	690
BpuMI	CCSGG	1 cut(s)	778
BsaAI	YACGTR	1 cut(s)	1275
BsaHI	GRCGYC	1 cut(s)	144
BsaJI	CCNNGG	3 cut(s)	148, 1102, 1103
BsaWI	WCCGGW	1 cut(s)	29
BsaXI	ACNNNNNCTCC	2 cut(s)	666, 696
Bsc4I	CCNNNNNNNGG	2 cut(s)	668, 1109
Bse118I	RCCGGY	4 cut(s)	29, 77, 176, 1168
Bse1I	ACTGG	1 cut(s)	989
Bse3DI	GCAATG	3 cut(s)	570, 711, 882
BseBI	CCWGG	1 cut(s)	1104
BseDI	CCNNGG	3 cut(s)	148, 1102, 1103
BseGI	GGATG	2 cut(s)	422, 940
BseLI	CCNNNNNNNGG	2 cut(s)	668, 1109
BseMI	GCAATG	3 cut(s)	570, 711, 882
BseNI	ACTGG	1 cut(s)	989
BseRI	GAGGAG	3 cut(s)	230, 233, 687
BseXI	GCAGC	2 cut(s)	1094, 1176
BsgI	GTGCAG	1 cut(s)	274
Bsh1236I	CGCG	1 cut(s)	1091
Bsh1285I	CGRYCG	1 cut(s)	30
BshTI	ACCGGT	1 cut(s)	29
BsiEI	CGRYCG	1 cut(s)	30
BsiSI	CCGG	6 cut(s)	30, 78, 177, 189, 777, 1169
BslFI	GGGAC	1 cut(s)	1085
BslI	CCNNNNNNNGG	2 cut(s)	668, 1109
BsmAI	GTCTC	3 cut(s)	130, 603, 1036
BsmBI	CGTCTC	1 cut(s)	130
BsmFI	GGGAC	1 cut(s)	1085
BsmI	GAATGC	1 cut(s)	164
Bsp143I	GATC	8 cut(s)	6, 191, 383, 501, 832, 930, 954, 1254
Bsp68I	TCGCGA	1 cut(s)	1091
BspACI	CCGC	6 cut(s)	62, 81, 169, 680, 944, 1248
BspFNI	CGCG	1 cut(s)	1091
BspLI	GGNNCC	1 cut(s)	477
BspPI	GGATC	3 cut(s)	199, 391, 509
BspQI	GCTCTTC	1 cut(s)	105
BsrDI	GCAATG	3 cut(s)	570, 711, 882
BsrFI	RCCGGY	4 cut(s)	29, 77, 176, 1168
BsrI	ACTGG	1 cut(s)	989
BssAI	RCCGGY	4 cut(s)	29, 77, 176, 1168
BssECI	CCNNGG	3 cut(s)	148, 1102, 1103
BssMI	GATC	8 cut(s)	6, 191, 383, 501, 832, 930, 954, 1254
BssNI	GRCGYC	1 cut(s)	144
BssT1I	CCWWGG	1 cut(s)	148
Bst2UI	CCWGG	1 cut(s)	1104
Bst6I	CTCTTC	3 cut(s)	48, 105, 968
BstACI	GRCGYC	1 cut(s)	144
BstBAI	YACGTR	1 cut(s)	1275
BstC8I	GCNNGC	3 cut(s)	236, 774, 1170
BstF5I	GGATG	2 cut(s)	422, 940
BstFNI	CGCG	1 cut(s)	1091
BstHHI	GCGC	1 cut(s)	1148
BstKTI	GATC	8 cut(s)	9, 194, 386, 504, 835, 933, 957, 1257
BstMAI	GTCTC	3 cut(s)	130, 603, 1036
BstMBI	GATC	8 cut(s)	6, 191, 383, 501, 832, 930, 954, 1254
BstMCI	CGRYCG	1 cut(s)	30
BstMWI	GCNNNNNNNGC	2 cut(s)	994, 1088
BstNI	CCWGG	1 cut(s)	1104
BstNSI	RCATGY	1 cut(s)	238
BstSCI	CCNGG	2 cut(s)	776, 1102
BstSNI	TACGTA	1 cut(s)	1275
BstUI	CGCG	1 cut(s)	1091
BstV1I	GCAGC	2 cut(s)	1094, 1176
BstV2I	GAAGAC	1 cut(s)	146
BstX2I	RGATCY	1 cut(s)	191
BstXI	CCANNNNNNTGG	1 cut(s)	873
BstYI	RGATCY	1 cut(s)	191
BtgZI	GCGATG	1 cut(s)	157
BtsCI	GGATG	2 cut(s)	422, 940
BtsI	GCAGTG	1 cut(s)	366
BtsIMutI	CAGTG	2 cut(s)	257, 366
BtuMI	TCGCGA	1 cut(s)	1091
Cac8I	GCNNGC	3 cut(s)	236, 774, 1170
CaiI	CAGNNNCTG	1 cut(s)	970
CfoI	GCGC	1 cut(s)	1148
Cfr10I	RCCGGY	4 cut(s)	29, 77, 176, 1168
Cfr13I	GGNCC	1 cut(s)	1196
CseI	GACGC	1 cut(s)	133
Csp6I	GTAC	7 cut(s)	138, 938, 1009, 1113, 1137, 1272, 1276
CspAI	ACCGGT	1 cut(s)	29
CviAII	CATG	2 cut(s)	235, 934
CviJI	RGCY	9 cut(s)	188, 265, 518, 716, 746, 764, 824, 988, 1172
CviKI_1	RGCY	9 cut(s)	188, 265, 518, 716, 746, 764, 824, 988, 1172
CviQI	GTAC	7 cut(s)	138, 938, 1009, 1113, 1137, 1272, 1276
DpnI	GATC	8 cut(s)	8, 193, 385, 503, 834, 932, 956, 1256
DpnII	GATC	8 cut(s)	6, 191, 383, 501, 832, 930, 954, 1254
Eam1104I	CTCTTC	3 cut(s)	48, 105, 968
EarI	CTCTTC	3 cut(s)	48, 105, 968
EciI	GGCGGA	1 cut(s)	51
Eco105I	TACGTA	1 cut(s)	1275
Eco130I	CCWWGG	1 cut(s)	148
Eco32I	GATATC	1 cut(s)	847
Eco47I	GGWCC	1 cut(s)	1196
Eco57I	CTGAAG	1 cut(s)	992
EcoRI	GAATTC	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	1102
EcoRV	GATATC	1 cut(s)	847
EcoT14I	CCWWGG	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	148
Esp3I	CGTCTC	1 cut(s)	130
FaeI	CATG	2 cut(s)	238, 937
FalI	AAGNNNNNCTT	2 cut(s)	730, 762
FaqI	GGGAC	1 cut(s)	1085
FatI	CATG	2 cut(s)	234, 933
FauI	CCCGC	1 cut(s)	1241
FbaI	TGATCA	1 cut(s)	832
FblI	GTMKAC	1 cut(s)	644
Fnu4HI	GCNGC	2 cut(s)	1083, 1190
FokI	GGATG	2 cut(s)	409, 927
Fsp4HI	GCNGC	2 cut(s)	1083, 1190
FspAI	RTGCGCAY	1 cut(s)	1147
FspBI	CTAG	1 cut(s)	266
FspI	TGCGCA	1 cut(s)	1147
GlaI	GCGC	1 cut(s)	1147
GluI	GCNGC	2 cut(s)	1083, 1190
GsuI	CTGGAG	1 cut(s)	690
HapII	CCGG	6 cut(s)	30, 78, 177, 189, 777, 1169
HgaI	GACGC	1 cut(s)	133
HhaI	GCGC	1 cut(s)	1148
Hin1I	GRCGYC	1 cut(s)	144
Hin1II	CATG	2 cut(s)	238, 937
Hin6I	GCGC	1 cut(s)	1146
HinP1I	GCGC	1 cut(s)	1146
HindIII	AAGCTT	1 cut(s)	744
HinfI	GANTC	5 cut(s)	35, 216, 269, 290, 469
HpaII	CCGG	6 cut(s)	30, 78, 177, 189, 777, 1169
HphI	GGTGA	6 cut(s)	44, 95, 317, 610, 842, 1172
Hpy166II	GTNNAC	3 cut(s)	645, 659, 921
Hpy188I	TCNGA	6 cut(s)	70, 215, 274, 894, 930, 1292
Hpy188III	TCNNGA	1 cut(s)	1090
Hpy8I	GTNNAC	3 cut(s)	645, 659, 921
Hpy99I	CGWCG	5 cut(s)	28, 137, 215, 1232, 1292
HpyAV	CCTTC	2 cut(s)	272, 599
HpyCH4IV	ACGT	5 cut(s)	710, 785, 917, 1230, 1274
HpyCH4V	TGCA	7 cut(s)	234, 255, 552, 704, 1043, 1082, 1121
HpyF10VI	GCNNNNNNNGC	2 cut(s)	994, 1088
HpySE526I	ACGT	5 cut(s)	710, 785, 917, 1230, 1274
Hsp92I	GRCGYC	1 cut(s)	144
Hsp92II	CATG	2 cut(s)	238, 937
HspAI	GCGC	1 cut(s)	1146
KroI	GCCGGC	1 cut(s)	1168
KroNI	GCCGGC	1 cut(s)	1170
Ksp22I	TGATCA	1 cut(s)	832
Kzo9I	GATC	8 cut(s)	6, 191, 383, 501, 832, 930, 954, 1254
LguI	GCTCTTC	1 cut(s)	105
LmnI	GCTCC	1 cut(s)	243
Lsp1109I	GCAGC	2 cut(s)	1094, 1176
LweI	GCATC	3 cut(s)	180, 1006, 1130
MaeI	CTAG	1 cut(s)	266
MaeII	ACGT	5 cut(s)	710, 785, 917, 1230, 1274
MaeIII	GTNAC	2 cut(s)	83, 113
MalI	GATC	8 cut(s)	8, 193, 385, 503, 834, 932, 956, 1256
MboI	GATC	8 cut(s)	6, 191, 383, 501, 832, 930, 954, 1254
MboII	GAAGA	7 cut(s)	35, 92, 146, 287, 296, 299, 985
MflI	RGATCY	1 cut(s)	191
MluCI	AATT	4 cut(s)	353, 755, 871, 1037
MmeI	TCCRAC	4 cut(s)	193, 469, 1111, 1270
MroNI	GCCGGC	1 cut(s)	1168
MseI	TTAA	5 cut(s)	50, 347, 446, 858, 948
MslI	CAYNNNNRTG	2 cut(s)	563, 1002
MspI	CCGG	6 cut(s)	30, 78, 177, 189, 777, 1169
MspR9I	CCNGG	2 cut(s)	778, 1104
Mva1269I	GAATGC	1 cut(s)	164
MvaI	CCWGG	1 cut(s)	1104
MvnI	CGCG	1 cut(s)	1091
MwoI	GCNNNNNNNGC	2 cut(s)	994, 1088
NaeI	GCCGGC	1 cut(s)	1170
NciI	CCSGG	1 cut(s)	778
NdeII	GATC	8 cut(s)	6, 191, 383, 501, 832, 930, 954, 1254
NgoMIV	GCCGGC	1 cut(s)	1168
NlaIII	CATG	2 cut(s)	238, 937
NlaIV	GGNNCC	1 cut(s)	477
NmuCI	GTSAC	1 cut(s)	83
NruI	TCGCGA	1 cut(s)	1091
NsbI	TGCGCA	1 cut(s)	1147
NspI	RCATGY	1 cut(s)	238
PaeI	GCATGC	1 cut(s)	238
PasI	CCCWGGG	1 cut(s)	1103
PciSI	GCTCTTC	1 cut(s)	105
PcsI	WCGNNNNNNNCGW	2 cut(s)	129, 141
PctI	GAATGC	1 cut(s)	164
PdiI	GCCGGC	1 cut(s)	1170
PfeI	GAWTC	5 cut(s)	35, 216, 269, 290, 469
PflMI	CCANNNNNTGG	1 cut(s)	1109
PinAI	ACCGGT	1 cut(s)	29
PkrI	GCNGC	2 cut(s)	1084, 1191
Ppu21I	YACGTR	1 cut(s)	1275
Psp6I	CCWGG	1 cut(s)	1102
PspGI	CCWGG	1 cut(s)	1102
PspN4I	GGNNCC	1 cut(s)	477
PspPI	GGNCC	1 cut(s)	1196
PsrI	GAACNNNNNNTAC	2 cut(s)	386, 418
PstNI	CAGNNNCTG	1 cut(s)	970
PsuI	RGATCY	1 cut(s)	191
RruI	TCGCGA	1 cut(s)	1091
RsaI	GTAC	7 cut(s)	139, 939, 1010, 1114, 1138, 1273, 1277
RsaNI	GTAC	7 cut(s)	138, 938, 1009, 1113, 1137, 1272, 1276
RseI	CAYNNNNRTG	2 cut(s)	563, 1002
SapI	GCTCTTC	1 cut(s)	105
SaqAI	TTAA	5 cut(s)	50, 347, 446, 858, 948
SatI	GCNGC	2 cut(s)	1083, 1190
Sau3AI	GATC	8 cut(s)	6, 191, 383, 501, 832, 930, 954, 1254
Sau96I	GGNCC	1 cut(s)	1196
ScaI	AGTACT	1 cut(s)	1138
ScrFI	CCNGG	2 cut(s)	778, 1104
SfaNI	GCATC	3 cut(s)	180, 1006, 1130
SinI	GGWCC	1 cut(s)	1196
SmiMI	CAYNNNNRTG	2 cut(s)	563, 1002
SnaBI	TACGTA	1 cut(s)	1275
SphI	GCATGC	1 cut(s)	238
Sse9I	AATT	4 cut(s)	353, 755, 871, 1037
SsiI	CCGC	6 cut(s)	62, 81, 169, 680, 944, 1248
SspMI	CTAG	1 cut(s)	266
StyD4I	CCNGG	2 cut(s)	776, 1102
StyI	CCWWGG	1 cut(s)	148
TaiI	ACGT	5 cut(s)	713, 788, 920, 1233, 1277
TaqI	TCGA	5 cut(s)	293, 340, 412, 483, 1227
TaqII	GACCGA	1 cut(s)	1184
TasI	AATT	4 cut(s)	353, 755, 871, 1037
TatI	WGTACW	1 cut(s)	1136
TfiI	GAWTC	5 cut(s)	35, 216, 269, 290, 469
Tru1I	TTAA	5 cut(s)	50, 347, 446, 858, 948
Tru9I	TTAA	5 cut(s)	50, 347, 446, 858, 948
TscAI	CASTG	2 cut(s)	257, 373
TseFI	GTSAC	1 cut(s)	83
TseI	GCWGC	2 cut(s)	1082, 1189
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	4 cut(s)	27, 394, 451, 1225
TspRI	CASTG	2 cut(s)	257, 373
Van91I	CCANNNNNTGG	1 cut(s)	1109
VpaK11BI	GGWCC	1 cut(s)	1196
XapI	RAATTY	2 cut(s)	353, 1037
XceI	RCATGY	1 cut(s)	238
XmiI	GTMKAC	1 cut(s)	644
XspI	CTAG	1 cut(s)	266
ZrmI	AGTACT	1 cut(s)	1138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.