Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0012445

Physical Location & Seq

Genomic Coordinates Reverse (-)

12199568 .. 12202841

Gene Structure 3274 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G088200.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGGAGTGTGGAGGAGGACAGAGCAAGGCGGTTCCTTTGCTTGACAAGCCAGCTGGGGCTTCTGCGGCTCAGACTCTCGGAAACATAATCGTTTCCGTTGTTGGGACCGGCGTTTTGGGTCTCCCTTTCGCTTTGAGAATCGCTGGCTGGCTTGCGGGTTCGCTTGGTGTGATTATTGCTGGCCTCGGCACCTACTATTGCATGCTCCTCCTTGTGGAATGTAGGGAGAAGTTGGCATCAGTAGAAGACTCAGCAAATAGAAAAACTTATGGTGATTTGGGTTATGGATGCATGGGAAGGACAGGTCGTTATATAACCGAATCTGTGATTCTGGTTGCCCAATGTGGAGGCTCCGTGGCGTATCTTGTATTTGTTGGGCAAAACCTTTCATCGATATTGAATGGCTACGGTTTCTCAGTTGCTTCCTGTATATTTTTATTAGTTCCAATTGAAATTGGGCTGTCTTGGATAGGCAGTCTATCTGCTTTAGCACCCTTTAGTGTCTTTGCATCAGTCTGCAATTTGTTGGCTATGCTCTTTGTGGTGAAAGAAGACATACAGCAGGCATTCGAGGGTGAGTTTTCTTTTAGTGATAGGACCGCGGTCACATCAAGTATAGGAGGGTTGCCATTTGCAGGAGGGGTGGCAGTGTTTTGTTTTGAGGGGTTTGGGATGACATTAGCACTGGAAGGTTCCATGCGAGACAAAACCTCGTTCCCGAGGTTGCTTGGTCTGGCTTTGACAGGCATAACCCTTGTCTATGTTTTATTCGGATTCGCCGGTTACATGGCTTACGGTGATCAAACCAGAGACAGTGTCACTCTCAATCTCCCTCGAAATTGGTCTGCTGTAGTAATTCAGATTGGTTTGTGCTTGGGGCTAATATTTACGTTCCCAATCATGCTACACCCAATTAACGAGATCATAGAGGGAAAGCTAGCGAAAGTAAAATGGTTTCAGAAGGCTCATGACAATAACGACGAGTATTCAACAACACGAATCGGAAAATTTGCAATATACATGACTCGAGCAATGGTGGTGATCCAATTGGCGGTCTTGGCCTCATGTGTTCCAGGGTTTGCAGTATTTGCCTCGCTTGTGGGGAGTACTGTATGTGCACTGATCTCATTTGTTTTGCCAGCTACATTTCACTTAGCATTATTGGATTCTTCCCTAAAACTCTGGCAGAGAACCTTGGATTTTTCCATTTTATTGTGTGGAATGCTTTTCGCTGCTTACGGTACCTACAACGCCATAGTCGGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0009605 GO:0009607 GO:0009624 GO:0012505 GO:0015075 GO:0015171 GO:0015173 GO:0015175 GO:0015318 GO:0015711 GO:0015801 GO:0015804 GO:0015849 GO:0016020 GO:0022857 GO:0031984 GO:0034220 GO:0042175 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:0098827 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

423

Amino Acids

44.85

Weight (kDa)

6.32

Isoelectric Point (pI)

30.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11900 AT3G11900
fragaria_vesca	FvH4_6g21140 FvH4_6g21140 FvH4_6g21140
malus_domestica	MD12G1047000.v1.1
prunus_persica	Prupe.7G088200_v2.0.a1 Prupe.7G088200_v2.0.a1
pyrus_communis	pycom12g04050
rosa_chinensis	RchiOBHm_Chr3g0477611
rosa_laevigata	RLG00000023706
rosa_multiflora	Rmu_sc0000775.1_g000010
rosa_roxburghii	Rroxscaffold_6G00403830
rosa_rugosa	Rorug03G0162300
rosa_samantha	Rh3AG212300 Rh3BG246000 Rh3CG239600 Rh3DG239100
rosa_wichuraiana	Rw3G019220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1241
AccB1I	GGYRCC	2 cut(s)	188, 1241
AccII	CGCG	1 cut(s)	602
AciI	CCGC	6 cut(s)	29, 65, 155, 600, 602, 1052
AclWI	GGATC	1 cut(s)	1036
AcsI	RAATTY	1 cut(s)	1007
AfaI	GTAC	2 cut(s)	1108, 1243
AfiI	CCNNNNNNNGG	4 cut(s)	102, 214, 635, 1051
AgsI	TTSAA	3 cut(s)	400, 452, 990
AjnI	CCWGG	1 cut(s)	1072
AluBI	AGCT	3 cut(s)	53, 937, 1142
AluI	AGCT	3 cut(s)	53, 937, 1142
Alw21I	GWGCWC	1 cut(s)	1120
Alw26I	GTCTC	3 cut(s)	125, 696, 804
Alw44I	GTGCAC	1 cut(s)	1116
AlwI	GGATC	1 cut(s)	1036
Ama87I	CYCGRG	2 cut(s)	718, 1026
AoxI	GGCC	2 cut(s)	181, 1059
ApaLI	GTGCAC	1 cut(s)	1116
ApeKI	GCWGC	1 cut(s)	1232
ApoI	RAATTY	1 cut(s)	1007
ArsI	GACNNNNNNTTYG	2 cut(s)	97, 129
Asp718I	GGTACC	1 cut(s)	1241
AspS9I	GGNCC	2 cut(s)	105, 597
AsuHPI	GGTGA	5 cut(s)	284, 556, 587, 809, 1051
AsuNHI	GCTAGC	1 cut(s)	937
AvaI	CYCGRG	2 cut(s)	718, 1026
AvaII	GGWCC	2 cut(s)	105, 597
BaeGI	GKGCMC	1 cut(s)	1120
BanI	GGYRCC	2 cut(s)	188, 1241
BbsI	GAAGAC	2 cut(s)	252, 558
Bbv12I	GWGCWC	1 cut(s)	1120
BbvI	GCAGC	1 cut(s)	1219
BciT130I	CCWGG	1 cut(s)	1074
BclI	TGATCA	1 cut(s)	799
BcoDI	GTCTC	3 cut(s)	125, 696, 804
BfaI	CTAG	1 cut(s)	938
BfmI	CTRYAG	1 cut(s)	849
BisI	GCNGC	2 cut(s)	66, 1233
BlsI	GCNGC	2 cut(s)	67, 1234
BmcAI	AGTACT	1 cut(s)	1108
Bme1390I	CCNGG	1 cut(s)	1074
Bme18I	GGWCC	2 cut(s)	105, 597
BmeT110I	CYCGRG	2 cut(s)	718, 1026
BmgT120I	GGNCC	2 cut(s)	105, 597
BmiI	GGNNCC	6 cut(s)	33, 106, 190, 352, 694, 1243
BmrFI	CCNGG	1 cut(s)	1074
BmsI	GCATC	3 cut(s)	245, 278, 518
BmtI	GCTAGC	1 cut(s)	941
BoxI	GACNNNNGTC	1 cut(s)	602
BpiI	GAAGAC	2 cut(s)	252, 558
Bsa29I	ATCGAT	1 cut(s)	392
BsaI	GGTCTC	1 cut(s)	125
BsaJI	CCNNGG	6 cut(s)	184, 354, 600, 719, 1073, 1194
BsaXI	ACNNNNNCTCC	2 cut(s)	339, 369
Bsc4I	CCNNNNNNNGG	4 cut(s)	102, 214, 635, 1051
Bse118I	RCCGGY	2 cut(s)	107, 779
Bse1I	ACTGG	1 cut(s)	690
Bse3DI	GCAATG	1 cut(s)	1038
BseBI	CCWGG	1 cut(s)	1074
BseCI	ATCGAT	1 cut(s)	392
BseDI	CCNNGG	6 cut(s)	184, 354, 600, 719, 1073, 1194
BseGI	GGATG	2 cut(s)	293, 678
BseLI	CCNNNNNNNGG	4 cut(s)	102, 214, 635, 1051
BseMI	GCAATG	1 cut(s)	1038
BseMII	CTCAG	3 cut(s)	83, 264, 429
BseNI	ACTGG	1 cut(s)	690
BseRI	GAGGAG	2 cut(s)	27, 197
BseSI	GKGCMC	1 cut(s)	1120
BseXI	GCAGC	1 cut(s)	1219
BseYI	CCCAGC	1 cut(s)	53
Bsh1236I	CGCG	1 cut(s)	602
BshFI	GGCC	2 cut(s)	183, 1061
BshNI	GGYRCC	2 cut(s)	188, 1241
BshVI	ATCGAT	1 cut(s)	392
BsiHKAI	GWGCWC	1 cut(s)	1120
BsiHKCI	CYCGRG	2 cut(s)	718, 1026
BsiSI	CCGG	2 cut(s)	108, 780
BslFI	GGGAC	1 cut(s)	118
BslI	CCNNNNNNNGG	4 cut(s)	102, 214, 635, 1051
BsmAI	GTCTC	3 cut(s)	125, 696, 804
BsmFI	GGGAC	1 cut(s)	118
BsmI	GAATGC	2 cut(s)	566, 1227
BsnI	GGCC	2 cut(s)	183, 1061
Bso31I	GGTCTC	1 cut(s)	125
BsoBI	CYCGRG	2 cut(s)	718, 1026
Bsp1286I	GDGCHC	1 cut(s)	1120
Bsp143I	GATC	4 cut(s)	799, 921, 1041, 1122
BspACI	CCGC	6 cut(s)	29, 65, 155, 600, 602, 1052
BspANI	GGCC	2 cut(s)	183, 1061
BspCNI	CTCAG	3 cut(s)	82, 263, 428
BspDI	ATCGAT	1 cut(s)	392
BspFNI	CGCG	1 cut(s)	602
BspHI	TCATGA	1 cut(s)	967
BspLI	GGNNCC	6 cut(s)	33, 106, 190, 352, 694, 1243
BspOI	GCTAGC	1 cut(s)	941
BspPI	GGATC	1 cut(s)	1036
BspT107I	GGYRCC	2 cut(s)	188, 1241
BspTNI	GGTCTC	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	1038
BsrFI	RCCGGY	2 cut(s)	107, 779
BsrI	ACTGG	1 cut(s)	690
BssAI	RCCGGY	2 cut(s)	107, 779
BssECI	CCNNGG	6 cut(s)	184, 354, 600, 719, 1073, 1194
BssMI	GATC	4 cut(s)	799, 921, 1041, 1122
BssT1I	CCWWGG	1 cut(s)	1194
Bst2UI	CCWGG	1 cut(s)	1074
Bst4CI	ACNGT	5 cut(s)	410, 797, 815, 1111, 1241
BstAPI	GCANNNNNTGC	1 cut(s)	1088
BstC8I	GCNNGC	9 cut(s)	51, 145, 149, 153, 181, 203, 564, 939, 1140
BstDEI	CTNAG	4 cut(s)	69, 250, 415, 1153
BstDSI	CCRYGG	2 cut(s)	354, 600
BstF5I	GGATG	2 cut(s)	293, 678
BstFNI	CGCG	1 cut(s)	602
BstKTI	GATC	4 cut(s)	802, 924, 1044, 1125
BstMAI	GTCTC	3 cut(s)	125, 696, 804
BstMBI	GATC	4 cut(s)	799, 921, 1041, 1122
BstMWI	GCNNNNNNNGC	4 cut(s)	46, 65, 1058, 1088
BstNI	CCWGG	1 cut(s)	1074
BstNSI	RCATGY	1 cut(s)	205
BstPAI	GACNNNNGTC	1 cut(s)	602
BstSCI	CCNGG	1 cut(s)	1072
BstSFI	CTRYAG	1 cut(s)	849
BstSLI	GKGCMC	1 cut(s)	1120
BstUI	CGCG	1 cut(s)	602
BstV1I	GCAGC	1 cut(s)	1219
BstV2I	GAAGAC	2 cut(s)	252, 558
Bsu15I	ATCGAT	1 cut(s)	392
BsuRI	GGCC	2 cut(s)	183, 1061
BsuTUI	ATCGAT	1 cut(s)	392
BtgI	CCRYGG	2 cut(s)	354, 600
BtsCI	GGATG	2 cut(s)	293, 678
BtsI	GCAGTG	1 cut(s)	654
BtsIMutI	CAGTG	4 cut(s)	654, 683, 820, 1118
Cac8I	GCNNGC	9 cut(s)	51, 145, 149, 153, 181, 203, 564, 939, 1140
CciI	TCATGA	1 cut(s)	967
Cfr10I	RCCGGY	2 cut(s)	107, 779
Cfr13I	GGNCC	2 cut(s)	105, 597
Cfr42I	CCGCGG	1 cut(s)	603
ClaI	ATCGAT	1 cut(s)	392
Csp6I	GTAC	2 cut(s)	1107, 1242
CviAII	CATG	8 cut(s)	202, 292, 697, 787, 901, 968, 1021, 1065
CviQI	GTAC	2 cut(s)	1107, 1242
DdeI	CTNAG	4 cut(s)	69, 250, 415, 1153
DpnI	GATC	4 cut(s)	801, 923, 1043, 1124
DpnII	GATC	4 cut(s)	799, 921, 1041, 1122
Eco130I	CCWWGG	1 cut(s)	1194
Eco31I	GGTCTC	1 cut(s)	125
Eco47I	GGWCC	2 cut(s)	105, 597
Eco88I	CYCGRG	2 cut(s)	718, 1026
EcoRII	CCWGG	1 cut(s)	1072
EcoT14I	CCWWGG	1 cut(s)	1194
EcoT22I	ATGCAT	1 cut(s)	293
ErhI	CCWWGG	1 cut(s)	1194
FaeI	CATG	8 cut(s)	205, 295, 700, 790, 904, 971, 1024, 1068
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	8 cut(s)	201, 291, 696, 786, 900, 967, 1020, 1064
FauI	CCCGC	1 cut(s)	148
FbaI	TGATCA	1 cut(s)	799
Fnu4HI	GCNGC	2 cut(s)	66, 1233
FokI	GGATG	2 cut(s)	300, 685
Fsp4HI	GCNGC	2 cut(s)	66, 1233
FspBI	CTAG	1 cut(s)	938
GluI	GCNGC	2 cut(s)	66, 1233
GsaI	CCCAGC	1 cut(s)	57
HaeIII	GGCC	2 cut(s)	183, 1061
HapII	CCGG	2 cut(s)	108, 780
Hin1II	CATG	8 cut(s)	205, 295, 700, 790, 904, 971, 1024, 1068
HinfI	GANTC	9 cut(s)	73, 138, 248, 320, 328, 774, 999, 1024, 1166
HpaII	CCGG	2 cut(s)	108, 780
HphI	GGTGA	5 cut(s)	284, 556, 587, 809, 1051
Hpy166II	GTNNAC	1 cut(s)	1118
Hpy188I	TCNGA	6 cut(s)	72, 80, 773, 861, 960, 1004
Hpy188III	TCNNGA	2 cut(s)	718, 968
Hpy8I	GTNNAC	1 cut(s)	1118
Hpy99I	CGWCG	1 cut(s)	983
HpyAV	CCTTC	3 cut(s)	291, 683, 955
HpyCH4III	ACNGT	5 cut(s)	410, 797, 815, 1111, 1241
HpyCH4IV	ACGT	1 cut(s)	890
HpyCH4V	TGCA	8 cut(s)	201, 291, 509, 519, 635, 1013, 1082, 1118
HpyF10VI	GCNNNNNNNGC	4 cut(s)	46, 65, 1058, 1088
HpyF3I	CTNAG	4 cut(s)	69, 250, 415, 1153
HpySE526I	ACGT	1 cut(s)	890
Hsp92II	CATG	8 cut(s)	205, 295, 700, 790, 904, 971, 1024, 1068
KpnI	GGTACC	1 cut(s)	1245
Ksp22I	TGATCA	1 cut(s)	799
KspI	CCGCGG	1 cut(s)	603
Kzo9I	GATC	4 cut(s)	799, 921, 1041, 1122
LmnI	GCTCC	2 cut(s)	210, 356
Lsp1109I	GCAGC	1 cut(s)	1219
LweI	GCATC	3 cut(s)	245, 278, 518
MaeI	CTAG	1 cut(s)	938
MaeII	ACGT	1 cut(s)	890
MaeIII	GTNAC	3 cut(s)	604, 782, 817
MalI	GATC	4 cut(s)	801, 923, 1043, 1124
MboI	GATC	4 cut(s)	799, 921, 1041, 1122
MboII	GAAGA	3 cut(s)	257, 563, 1161
MfeI	CAATTG	2 cut(s)	447, 1046
MhlI	GDGCHC	1 cut(s)	1120
MluCI	AATT	8 cut(s)	447, 453, 520, 838, 855, 912, 1007, 1046
MlyI	GAGTC	3 cut(s)	67, 242, 1018
Mph1103I	ATGCAT	1 cut(s)	293
MseI	TTAA	1 cut(s)	915
MspA1I	CMGCKG	2 cut(s)	53, 602
MspI	CCGG	2 cut(s)	108, 780
MspR9I	CCNGG	1 cut(s)	1074
MunI	CAATTG	2 cut(s)	447, 1046
Mva1269I	GAATGC	2 cut(s)	566, 1227
MvaI	CCWGG	1 cut(s)	1074
MvnI	CGCG	1 cut(s)	602
MwoI	GCNNNNNNNGC	4 cut(s)	46, 65, 1058, 1088
NdeII	GATC	4 cut(s)	799, 921, 1041, 1122
NheI	GCTAGC	1 cut(s)	937
NlaIII	CATG	8 cut(s)	205, 295, 700, 790, 904, 971, 1024, 1068
NlaIV	GGNNCC	6 cut(s)	33, 106, 190, 352, 694, 1243
NmeAIII	GCCGAG	1 cut(s)	165
NmuCI	GTSAC	2 cut(s)	604, 817
NsiI	ATGCAT	1 cut(s)	293
NspI	RCATGY	1 cut(s)	205
PaeI	GCATGC	1 cut(s)	205
PaeR7I	CTCGAG	1 cut(s)	1026
PagI	TCATGA	1 cut(s)	967
PctI	GAATGC	2 cut(s)	566, 1227
PfeI	GAWTC	6 cut(s)	138, 320, 328, 774, 999, 1166
PflFI	GACNNNGTC	1 cut(s)	815
PkrI	GCNGC	2 cut(s)	67, 1234
PleI	GAGTC	3 cut(s)	67, 242, 1018
PpsI	GAGTC	3 cut(s)	67, 242, 1018
PshAI	GACNNNNGTC	1 cut(s)	602
Psp6I	CCWGG	1 cut(s)	1072
PspFI	CCCAGC	1 cut(s)	53
PspGI	CCWGG	1 cut(s)	1072
PspN4I	GGNNCC	6 cut(s)	33, 106, 190, 352, 694, 1243
PspPI	GGNCC	2 cut(s)	105, 597
PspXI	VCTCGAGB	1 cut(s)	1026
PsyI	GACNNNGTC	1 cut(s)	815
PvuII	CAGCTG	1 cut(s)	53
RsaI	GTAC	2 cut(s)	1108, 1243
RsaNI	GTAC	2 cut(s)	1107, 1242
SacII	CCGCGG	1 cut(s)	603
SaqAI	TTAA	1 cut(s)	915
SatI	GCNGC	2 cut(s)	66, 1233
Sau3AI	GATC	4 cut(s)	799, 921, 1041, 1122
Sau96I	GGNCC	2 cut(s)	105, 597
ScaI	AGTACT	1 cut(s)	1108
SchI	GAGTC	3 cut(s)	67, 242, 1018
ScrFI	CCNGG	1 cut(s)	1074
SduI	GDGCHC	1 cut(s)	1120
SfaNI	GCATC	3 cut(s)	245, 278, 518
SfcI	CTRYAG	1 cut(s)	849
Sfr274I	CTCGAG	1 cut(s)	1026
Sfr303I	CCGCGG	1 cut(s)	603
SgrBI	CCGCGG	1 cut(s)	603
SinI	GGWCC	2 cut(s)	105, 597
SlaI	CTCGAG	1 cut(s)	1026
SmlI	CTYRAG	1 cut(s)	1026
SmoI	CTYRAG	1 cut(s)	1026
SphI	GCATGC	1 cut(s)	205
Sse9I	AATT	8 cut(s)	447, 453, 520, 838, 855, 912, 1007, 1046
SsiI	CCGC	6 cut(s)	29, 65, 155, 600, 602, 1052
SspI	AATATT	1 cut(s)	885
SspMI	CTAG	1 cut(s)	938
StyD4I	CCNGG	1 cut(s)	1072
StyI	CCWWGG	1 cut(s)	1194
TaaI	ACNGT	5 cut(s)	410, 797, 815, 1111, 1241
TaiI	ACGT	1 cut(s)	893
TaqI	TCGA	4 cut(s)	392, 570, 835, 1027
TasI	AATT	8 cut(s)	447, 453, 520, 838, 855, 912, 1007, 1046
TatI	WGTACW	1 cut(s)	1106
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	6 cut(s)	138, 320, 328, 774, 999, 1166
Tru1I	TTAA	1 cut(s)	915
Tru9I	TTAA	1 cut(s)	915
TscAI	CASTG	4 cut(s)	654, 690, 820, 1125
TseFI	GTSAC	2 cut(s)	604, 817
TseI	GCWGC	1 cut(s)	1232
Tsp45I	GTSAC	2 cut(s)	604, 817
TspDTI	ATGAA	1 cut(s)	378
TspGWI	ACGGA	2 cut(s)	85, 343
TspRI	CASTG	4 cut(s)	654, 690, 820, 1125
Tth111I	GACNNNGTC	1 cut(s)	815
VneI	GTGCAC	1 cut(s)	1116
VpaK11BI	GGWCC	2 cut(s)	105, 597
XapI	RAATTY	1 cut(s)	1007
XceI	RCATGY	1 cut(s)	205
XhoI	CTCGAG	1 cut(s)	1026
XspI	CTAG	1 cut(s)	938
ZrmI	AGTACT	1 cut(s)	1108
Zsp2I	ATGCAT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.