Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0012445

Physical Location & Seq

Genomic Coordinates Reverse (-)

27281586 .. 27284424

Gene Structure 2839 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023706

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGCGGGCGGAAAACAAAGCCCTGCGGGGGTTCCTCTGCTCGAAAAGGCTGTTGGGGCTTCCAAGGCTCAGACGCTCGGAAACATAATCGTCTCGGTTGTTGGGACCGGCGTGTTGGGCCTTCCGTATGCTTTGCGAATCGCTGGTTGGCTTGCTGGCTCGCTCGGCGTTATTGTCACCGGTCTTACAACATATTACTGTATGCTCCTCCTTGTGCAATGTAGGGAGAAATTTGCATCGGAAGAAGATTCAATGATTAAAAAGTCTTATGGTGATTTGGGGTATGAATGCATGGGAAGGAAAGGTCGTTATCTGACCGAATCCTTGATTTTGATTGCTCAATGCGGGGGCTCTGTGGCGTATCTTGTGTTTGTAGGACAAAATATTTCATCTATGTTCAATGGCCATGGACTCTCGGTTAATTCCTGTATATTTTTGCTAGTGCCAGTGGAAATTGGGTTATCTTGGATAGGTAGTCTATCTGCTTTAGCACCCTTCAGTATCTTTGCTGCCATCTGCAATTTGTTGGCTATGGCAATTGTGGTGAAGCAAGACATACAGCAAGCAGTAGAGGGTGAGTTTTCTTTTAGGGATAGGACGGCGATCACATCAAATATAGGAGGGTTGCCATTTGCAGGAGGCGTGGCAGTGTTTTGTTTTGAGGGGTTCGGGATGACATTGGCTTTGGAAGCCTCCATGAAAGATAAAACCCAGTTCCCAAGGTTGCTTGCTCAGACTTTCACGGGGATAAGCATTGTGTACGCTTTATTTGGATTCTTTGGATACATGGCTTACGGTGATCAAACGAGAGACATTATCACTCTCAATCTCCCCCGAAATTGGTCATCCATAGCCGTTCAGATTGGCTTGTGCTTGGGTTTAATATTTACATTCCCGATCATGCTCCACCCAATAAACGAGATCATAGAGGGAAACTTAACAAAAGATTCATCTACAAGAATGGGAAAATTGGGAGTATACATGAGTCGAGCAATGGTGGTGATGGTGTTGGCTGTCTTGGCCTCATGTGTGCCAGGATTTGCAGTGTTTGCCTCACTTGTGGGAAGTACAGTCTTCCCCCGACTTGTCATGTCTGCTCAGTGTGATTATGCCTTGCTTTTATCTTCTTCATCTTCTCAGTTGTGTTTGATTGTTTGTAAGGGGTGGATAGAGATGGATAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0009605 GO:0009607 GO:0009624 GO:0012505 GO:0015075 GO:0015171 GO:0015173 GO:0015175 GO:0015318 GO:0015711 GO:0015801 GO:0015804 GO:0015849 GO:0016020 GO:0022857 GO:0031984 GO:0034220 GO:0042175 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:0098827 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

395

Amino Acids

42.1

Weight (kDa)

7.92

Isoelectric Point (pI)

43.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	21 - 362	2.6e-82	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11900 AT3G11900
fragaria_vesca	FvH4_6g21140 FvH4_6g21140 FvH4_6g21140
malus_domestica	MD12G1047000.v1.1
prunus_persica	Prupe.7G088200_v2.0.a1 Prupe.7G088200_v2.0.a1
pyrus_communis	pycom12g04050
rosa_chinensis	RchiOBHm_Chr3g0477611
rosa_laevigata	RLG00000023706
rosa_multiflora	Rmu_sc0000775.1_g000010
rosa_roxburghii	Rroxscaffold_6G00403830
rosa_rugosa	Rorug03G0162300
rosa_samantha	Rh3AG212300 Rh3BG246000 Rh3CG239600 Rh3DG239100
rosa_wichuraiana	Rw3G019220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	978
AciI	CCGC	4 cut(s)	5, 9, 26, 345
AcoI	YGGCCR	1 cut(s)	403
AcsI	RAATTY	1 cut(s)	230
AcuI	CTGAAG	1 cut(s)	481
AfaI	GTAC	2 cut(s)	761, 1069
AfiI	CCNNNNNNNGG	3 cut(s)	28, 635, 840
AgeI	ACCGGT	1 cut(s)	179
AgsI	TTSAA	2 cut(s)	252, 400
AjnI	CCWGG	1 cut(s)	1033
AjuI	GAANNNNNNNTTGG	4 cut(s)	36, 68, 130, 162
Alw26I	GTCTC	2 cut(s)	97, 804
AoxI	GGCC	3 cut(s)	118, 403, 1020
ApeKI	GCWGC	1 cut(s)	509
ApoI	RAATTY	1 cut(s)	230
ArsI	GACNNNNNNTTYG	2 cut(s)	667, 699
AsiGI	ACCGGT	1 cut(s)	179
AspS9I	GGNCC	2 cut(s)	105, 118
AsuHPI	GGTGA	6 cut(s)	169, 284, 556, 587, 809, 1012
AvaII	GGWCC	1 cut(s)	105
BalI	TGGCCA	1 cut(s)	405
BanII	GRGCYC	1 cut(s)	353
BbsI	GAAGAC	1 cut(s)	1066
BbvI	GCAGC	1 cut(s)	496
BccI	CCATC	3 cut(s)	521, 997, 1168
BceAI	ACGGC	2 cut(s)	615, 839
BciT130I	CCWGG	1 cut(s)	1035
BciVI	GTATCC	1 cut(s)	776
BclI	TGATCA	1 cut(s)	799
BcoDI	GTCTC	2 cut(s)	97, 804
BfaI	CTAG	1 cut(s)	440
BfuI	GTATCC	1 cut(s)	776
BisI	GCNGC	1 cut(s)	510
BlsI	GCNGC	1 cut(s)	511
Bme1390I	CCNGG	1 cut(s)	1035
Bme18I	GGWCC	1 cut(s)	105
BmgT120I	GGNCC	2 cut(s)	105, 118
BmiI	GGNNCC	2 cut(s)	33, 106
BmrFI	CCNGG	1 cut(s)	1035
BmrI	ACTGGG	1 cut(s)	706
BmsI	GCATC	1 cut(s)	245
BmuI	ACTGGG	1 cut(s)	706
BpiI	GAAGAC	1 cut(s)	1066
BsaJI	CCNNGG	3 cut(s)	63, 406, 719
BsaWI	WCCGGW	1 cut(s)	179
Bsc4I	CCNNNNNNNGG	3 cut(s)	28, 635, 840
Bse118I	RCCGGY	2 cut(s)	107, 179
Bse1I	ACTGG	2 cut(s)	446, 712
Bse3DI	GCAATG	2 cut(s)	224, 999
BseBI	CCWGG	1 cut(s)	1035
BseDI	CCNNGG	3 cut(s)	63, 406, 719
BseGI	GGATG	2 cut(s)	678, 845
BseLI	CCNNNNNNNGG	3 cut(s)	28, 635, 840
BseMI	GCAATG	2 cut(s)	224, 999
BseMII	CTCAG	4 cut(s)	83, 746, 1112, 1151
BseNI	ACTGG	2 cut(s)	446, 712
BseRI	GAGGAG	1 cut(s)	197
BseXI	GCAGC	1 cut(s)	496
BshFI	GGCC	3 cut(s)	120, 405, 1022
BshTI	ACCGGT	1 cut(s)	179
BsiSI	CCGG	2 cut(s)	108, 180
BslFI	GGGAC	1 cut(s)	118
BslI	CCNNNNNNNGG	3 cut(s)	28, 635, 840
BsmAI	GTCTC	2 cut(s)	97, 804
BsmBI	CGTCTC	1 cut(s)	97
BsmFI	GGGAC	1 cut(s)	118
BsmI	GAATGC	1 cut(s)	293
BsnI	GGCC	3 cut(s)	120, 405, 1022
Bsp1286I	GDGCHC	1 cut(s)	353
Bsp143I	GATC	4 cut(s)	603, 799, 897, 921
Bsp19I	CCATGG	1 cut(s)	406
BspACI	CCGC	4 cut(s)	5, 9, 26, 345
BspANI	GGCC	3 cut(s)	120, 405, 1022
BspCNI	CTCAG	4 cut(s)	82, 745, 1111, 1150
BspLI	GGNNCC	2 cut(s)	33, 106
BsrDI	GCAATG	2 cut(s)	224, 999
BsrFI	RCCGGY	2 cut(s)	107, 179
BsrI	ACTGG	2 cut(s)	446, 712
BssAI	RCCGGY	2 cut(s)	107, 179
BssECI	CCNNGG	3 cut(s)	63, 406, 719
BssMI	GATC	4 cut(s)	603, 799, 897, 921
BssNAI	GTATAC	1 cut(s)	979
BssT1I	CCWWGG	3 cut(s)	63, 406, 719
Bst1107I	GTATAC	1 cut(s)	979
Bst2UI	CCWGG	1 cut(s)	1035
Bst4CI	ACNGT	3 cut(s)	200, 797, 1072
BstAPI	GCANNNNNTGC	1 cut(s)	1049
BstC8I	GCNNGC	6 cut(s)	7, 153, 157, 161, 564, 729
BstDEI	CTNAG	4 cut(s)	69, 732, 1098, 1137
BstDSI	CCRYGG	1 cut(s)	406
BstF5I	GGATG	2 cut(s)	678, 845
BstKTI	GATC	4 cut(s)	606, 802, 900, 924
BstMAI	GTCTC	2 cut(s)	97, 804
BstMBI	GATC	4 cut(s)	603, 799, 897, 921
BstMWI	GCNNNNNNNGC	7 cut(s)	56, 65, 117, 165, 689, 1019, 1049
BstNI	CCWGG	1 cut(s)	1035
BstSCI	CCNGG	1 cut(s)	1033
BstV1I	GCAGC	1 cut(s)	496
BstV2I	GAAGAC	1 cut(s)	1066
BstZ17I	GTATAC	1 cut(s)	979
BsuI	GTATCC	1 cut(s)	776
BsuRI	GGCC	3 cut(s)	120, 405, 1022
BtgI	CCRYGG	1 cut(s)	406
BtsCI	GGATG	2 cut(s)	678, 845
BtsI	GCAGTG	2 cut(s)	654, 1050
BtsIMutI	CAGTG	4 cut(s)	453, 654, 1050, 1106
Cac8I	GCNNGC	6 cut(s)	7, 153, 157, 161, 564, 729
Cfr10I	RCCGGY	2 cut(s)	107, 179
Cfr13I	GGNCC	2 cut(s)	105, 118
CseI	GACGC	1 cut(s)	82
Csp6I	GTAC	2 cut(s)	760, 1068
CspAI	ACCGGT	1 cut(s)	179
CviAII	CATG	8 cut(s)	292, 407, 697, 787, 901, 982, 1026, 1090
CviQI	GTAC	2 cut(s)	760, 1068
DdeI	CTNAG	4 cut(s)	69, 732, 1098, 1137
DpnI	GATC	4 cut(s)	605, 801, 899, 923
DpnII	GATC	4 cut(s)	603, 799, 897, 921
EaeI	YGGCCR	1 cut(s)	403
EciI	GGCGGA	1 cut(s)	24
Eco130I	CCWWGG	3 cut(s)	63, 406, 719
Eco24I	GRGCYC	1 cut(s)	353
Eco47I	GGWCC	1 cut(s)	105
Eco57I	CTGAAG	1 cut(s)	481
EcoRII	CCWGG	1 cut(s)	1033
EcoT14I	CCWWGG	3 cut(s)	63, 406, 719
EcoT22I	ATGCAT	1 cut(s)	293
EcoT38I	GRGCYC	1 cut(s)	353
ErhI	CCWWGG	3 cut(s)	63, 406, 719
Esp3I	CGTCTC	1 cut(s)	97
FaeI	CATG	8 cut(s)	295, 410, 700, 790, 904, 985, 1029, 1093
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	8 cut(s)	291, 406, 696, 786, 900, 981, 1025, 1089
FauI	CCCGC	2 cut(s)	19, 338
FbaI	TGATCA	1 cut(s)	799
FblI	GTMKAC	1 cut(s)	978
Fnu4HI	GCNGC	1 cut(s)	510
FokI	GGATG	2 cut(s)	685, 832
FriOI	GRGCYC	1 cut(s)	353
Fsp4HI	GCNGC	1 cut(s)	510
FspBI	CTAG	1 cut(s)	440
GluI	GCNGC	1 cut(s)	510
HaeIII	GGCC	3 cut(s)	120, 405, 1022
HapII	CCGG	2 cut(s)	108, 180
HgaI	GACGC	1 cut(s)	82
Hin1II	CATG	8 cut(s)	295, 410, 700, 790, 904, 985, 1029, 1093
HinfI	GANTC	7 cut(s)	138, 248, 320, 411, 774, 947, 985
HpaII	CCGG	2 cut(s)	108, 180
HphI	GGTGA	6 cut(s)	169, 284, 556, 587, 809, 1012
Hpy166II	GTNNAC	2 cut(s)	760, 979
Hpy188I	TCNGA	6 cut(s)	72, 80, 241, 315, 735, 861
Hpy188III	TCNNGA	2 cut(s)	670, 895
Hpy8I	GTNNAC	2 cut(s)	760, 979
HpyAV	CCTTC	3 cut(s)	131, 291, 505
HpyCH4III	ACNGT	3 cut(s)	200, 797, 1072
HpyCH4V	TGCA	6 cut(s)	217, 236, 291, 519, 635, 1043
HpyF10VI	GCNNNNNNNGC	7 cut(s)	56, 65, 117, 165, 689, 1019, 1049
HpyF3I	CTNAG	4 cut(s)	69, 732, 1098, 1137
Hsp92II	CATG	8 cut(s)	295, 410, 700, 790, 904, 985, 1029, 1093
Ksp22I	TGATCA	1 cut(s)	799
Kzo9I	GATC	4 cut(s)	603, 799, 897, 921
LmnI	GCTCC	2 cut(s)	210, 909
Lsp1109I	GCAGC	1 cut(s)	496
LweI	GCATC	1 cut(s)	245
MaeI	CTAG	1 cut(s)	440
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	4 cut(s)	605, 801, 899, 923
MboI	GATC	4 cut(s)	603, 799, 897, 921
MboII	GAAGA	6 cut(s)	254, 257, 1066, 1116, 1119, 1125
MfeI	CAATTG	1 cut(s)	537
MhlI	GDGCHC	1 cut(s)	353
MlsI	TGGCCA	1 cut(s)	405
MluCI	AATT	7 cut(s)	230, 421, 453, 520, 537, 838, 968
MluNI	TGGCCA	1 cut(s)	405
MlyI	GAGTC	2 cut(s)	405, 994
Mox20I	TGGCCA	1 cut(s)	405
Mph1103I	ATGCAT	1 cut(s)	293
MscI	TGGCCA	1 cut(s)	405
MseI	TTAA	4 cut(s)	258, 420, 881, 938
Msp20I	TGGCCA	1 cut(s)	405
MspI	CCGG	2 cut(s)	108, 180
MspR9I	CCNGG	1 cut(s)	1035
MunI	CAATTG	1 cut(s)	537
Mva1269I	GAATGC	1 cut(s)	293
MvaI	CCWGG	1 cut(s)	1035
MwoI	GCNNNNNNNGC	7 cut(s)	56, 65, 117, 165, 689, 1019, 1049
NcoI	CCATGG	1 cut(s)	406
NdeII	GATC	4 cut(s)	603, 799, 897, 921
NlaIII	CATG	8 cut(s)	295, 410, 700, 790, 904, 985, 1029, 1093
NlaIV	GGNNCC	2 cut(s)	33, 106
NmeAIII	GCCGAG	1 cut(s)	144
NmuCI	GTSAC	1 cut(s)	175
NsiI	ATGCAT	1 cut(s)	293
PctI	GAATGC	1 cut(s)	293
PfeI	GAWTC	5 cut(s)	138, 248, 320, 774, 947
PinAI	ACCGGT	1 cut(s)	179
PkrI	GCNGC	1 cut(s)	511
PleI	GAGTC	2 cut(s)	405, 993
PpsI	GAGTC	2 cut(s)	405, 993
Psp6I	CCWGG	1 cut(s)	1033
PspGI	CCWGG	1 cut(s)	1033
PspN4I	GGNNCC	2 cut(s)	33, 106
PspPI	GGNCC	2 cut(s)	105, 118
RsaI	GTAC	2 cut(s)	761, 1069
RsaNI	GTAC	2 cut(s)	760, 1068
SaqAI	TTAA	4 cut(s)	258, 420, 881, 938
SatI	GCNGC	1 cut(s)	510
Sau3AI	GATC	4 cut(s)	603, 799, 897, 921
Sau96I	GGNCC	2 cut(s)	105, 118
SchI	GAGTC	2 cut(s)	405, 994
ScrFI	CCNGG	1 cut(s)	1035
SduI	GDGCHC	1 cut(s)	353
SetI	ASST	4 cut(s)	307, 475, 725, 1184
SfaNI	GCATC	1 cut(s)	245
SinI	GGWCC	1 cut(s)	105
Sse9I	AATT	7 cut(s)	230, 421, 453, 520, 537, 838, 968
SsiI	CCGC	4 cut(s)	5, 9, 26, 345
SspI	AATATT	2 cut(s)	385, 885
SspMI	CTAG	1 cut(s)	440
StyD4I	CCNGG	1 cut(s)	1033
StyI	CCWWGG	3 cut(s)	63, 406, 719
TaaI	ACNGT	3 cut(s)	200, 797, 1072
TaqI	TCGA	2 cut(s)	42, 988
TaqII	GACCGA	1 cut(s)	332
TasI	AATT	7 cut(s)	230, 421, 453, 520, 537, 838, 968
TatI	WGTACW	1 cut(s)	1067
TfiI	GAWTC	5 cut(s)	138, 248, 320, 774, 947
Tru1I	TTAA	4 cut(s)	258, 420, 881, 938
Tru9I	TTAA	4 cut(s)	258, 420, 881, 938
TscAI	CASTG	4 cut(s)	453, 654, 1050, 1106
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	1 cut(s)	509
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	5 cut(s)	300, 378, 713, 939, 1119
TspGWI	ACGGA	1 cut(s)	114
TspRI	CASTG	4 cut(s)	453, 654, 1050, 1106
VpaK11BI	GGWCC	1 cut(s)	105
XapI	RAATTY	1 cut(s)	230
XmiI	GTMKAC	1 cut(s)	978
XspI	CTAG	1 cut(s)	440
Zsp2I	ATGCAT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.