Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0012445

Physical Location & Seq

Genomic Coordinates Forward (+)

22957153 .. 22960958

Gene Structure 3806 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG239600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGGGGGCGGAAAACCAAGCGCTGCGGGGGTTCCTCTGCTCGAAAAGGCTGTGGGGGCTTCCAAGGTTCAGACGCTCGGAAACATAATCGTCTCGGTTGTTGGGACCGGCGTCCTGGGCCTTCCGTATGCTTTGCGAATCGCTGGTTGGCTTGCTGGCTCGCTCGGCGTTATTGTCACCGGTCTTACAACATATTACTGCATGCTCCTCCTTGTGCAATGTAGGGAGAAATTTGCATCGGAAGAAGATTCAATGGTTAAAAAGTCGTATGGTGATCTGGGGTATGAATGCATGGGAAGGAAAGGTCGTTATCTGACTGAATCCTTGATTTTGATTGCTCAATGCGGGGGCGCTGTGGCGTATCTTGTGTTTGTAGGACAAAATATTTCATCTATGTTCAATGGCCATGGACTCTCGGTTAATTCCTGTATATTTTTGCTAGTGCCAGTGGAAATTGGGTTATCTTGGATAGGTAGTCTATCTGCTTTAGCACCCTTCAGTATCTTTGCTGCCATCTGCAATTTGTTGGCTATGGCAATTGTGGTGAAGCAAGACATACAGCAAGCAGTAGAGGGTGAGTTTTCTTTTAGGGATAGGACGGCGATCACATCAAATATAGGAGGGTTGCCATTTGCAGGAGGCGTGGCAGTGTTTTGTTTTGAGGGGTTCGGGATGACATTGGCTTTGGAAGCCTCTATGAAAGATAAAACCCAGTTCCCAAGGTTGCTTGCTCAGACTTTCACAGGGATAAGCATTGTGTACGCTTTATTTGGATTCTTTGGATACATGGCTTACGGTGATCAAACGAGAGACATTATCACTCTCAATCTCCCCCGAAATTGGTCATCCATAGCCGTTCAGGTAACGTACTCTAACCTTCAGCCTTCTGTTTTCAAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0009605 GO:0009607 GO:0009624 GO:0012505 GO:0015075 GO:0015171 GO:0015173 GO:0015175 GO:0015318 GO:0015711 GO:0015801 GO:0015804 GO:0015849 GO:0016020 GO:0022857 GO:0031984 GO:0034220 GO:0042175 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:0098827 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

300

Amino Acids

31.99

Weight (kDa)

8.11

Isoelectric Point (pI)

34.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	21 - 290	1.5e-67	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11900 AT3G11900
fragaria_vesca	FvH4_6g21140 FvH4_6g21140 FvH4_6g21140
malus_domestica	MD12G1047000.v1.1
prunus_persica	Prupe.7G088200_v2.0.a1 Prupe.7G088200_v2.0.a1
pyrus_communis	pycom12g04050
rosa_chinensis	RchiOBHm_Chr3g0477611
rosa_laevigata	RLG00000023706
rosa_multiflora	Rmu_sc0000775.1_g000010
rosa_roxburghii	Rroxscaffold_6G00403830
rosa_rugosa	Rorug03G0162300
rosa_samantha	Rh3AG212300 Rh3BG246000 Rh3CG239600 Rh3DG239100
rosa_wichuraiana	Rw3G019220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	9, 26, 345
AcoI	YGGCCR	1 cut(s)	403
AcsI	RAATTY	1 cut(s)	230
AcuI	CTGAAG	2 cut(s)	481, 863
AcyI	GRCGYC	1 cut(s)	111
AfaI	GTAC	2 cut(s)	761, 869
AfeI	AGCGCT	1 cut(s)	22
AfiI	CCNNNNNNNGG	2 cut(s)	635, 840
AgeI	ACCGGT	1 cut(s)	179
AgsI	TTSAA	3 cut(s)	252, 400, 895
AjnI	CCWGG	1 cut(s)	114
AjuI	GAANNNNNNNTTGG	2 cut(s)	130, 162
Alw26I	GTCTC	2 cut(s)	97, 804
Aor51HI	AGCGCT	1 cut(s)	22
AoxI	GGCC	2 cut(s)	118, 403
ApeKI	GCWGC	2 cut(s)	23, 509
ApoI	RAATTY	1 cut(s)	230
ArsI	GACNNNNNNTTYG	2 cut(s)	667, 699
AsiGI	ACCGGT	1 cut(s)	179
AspLEI	GCGC	2 cut(s)	23, 353
AspS9I	GGNCC	2 cut(s)	105, 118
AsuHPI	GGTGA	5 cut(s)	169, 284, 556, 587, 809
AvaII	GGWCC	1 cut(s)	105
BalI	TGGCCA	1 cut(s)	405
BbvI	GCAGC	2 cut(s)	10, 496
BccI	CCATC	1 cut(s)	521
BceAI	ACGGC	2 cut(s)	615, 839
BciT130I	CCWGG	1 cut(s)	116
BciVI	GTATCC	1 cut(s)	776
BclI	TGATCA	1 cut(s)	799
BcoDI	GTCTC	2 cut(s)	97, 804
BfaI	CTAG	1 cut(s)	440
BfoI	RGCGCY	2 cut(s)	24, 354
BfuI	GTATCC	1 cut(s)	776
BisI	GCNGC	2 cut(s)	24, 510
BlsI	GCNGC	2 cut(s)	25, 511
Bme1390I	CCNGG	1 cut(s)	116
Bme18I	GGWCC	1 cut(s)	105
BmgT120I	GGNCC	2 cut(s)	105, 118
BmiI	GGNNCC	2 cut(s)	33, 106
BmrFI	CCNGG	1 cut(s)	116
BmrI	ACTGGG	1 cut(s)	706
BmsI	GCATC	1 cut(s)	245
BmuI	ACTGGG	1 cut(s)	706
BoxI	GACNNNNGTC	1 cut(s)	110
BsaHI	GRCGYC	1 cut(s)	111
BsaJI	CCNNGG	4 cut(s)	63, 115, 406, 719
BsaWI	WCCGGW	1 cut(s)	179
Bsc4I	CCNNNNNNNGG	2 cut(s)	635, 840
Bse118I	RCCGGY	2 cut(s)	107, 179
Bse1I	ACTGG	2 cut(s)	446, 712
Bse3DI	GCAATG	1 cut(s)	224
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	4 cut(s)	63, 115, 406, 719
BseGI	GGATG	2 cut(s)	678, 845
BseLI	CCNNNNNNNGG	2 cut(s)	635, 840
BseMI	GCAATG	1 cut(s)	224
BseMII	CTCAG	1 cut(s)	746
BseNI	ACTGG	2 cut(s)	446, 712
BseRI	GAGGAG	1 cut(s)	197
BseXI	GCAGC	2 cut(s)	10, 496
BshFI	GGCC	2 cut(s)	120, 405
BshTI	ACCGGT	1 cut(s)	179
BsiSI	CCGG	2 cut(s)	108, 180
BslFI	GGGAC	1 cut(s)	118
BslI	CCNNNNNNNGG	2 cut(s)	635, 840
BsmAI	GTCTC	2 cut(s)	97, 804
BsmBI	CGTCTC	1 cut(s)	97
BsmFI	GGGAC	1 cut(s)	118
BsmI	GAATGC	1 cut(s)	293
BsnI	GGCC	2 cut(s)	120, 405
Bsp143I	GATC	3 cut(s)	274, 603, 799
Bsp19I	CCATGG	1 cut(s)	406
BspACI	CCGC	3 cut(s)	9, 26, 345
BspANI	GGCC	2 cut(s)	120, 405
BspCNI	CTCAG	1 cut(s)	745
BspLI	GGNNCC	2 cut(s)	33, 106
BsrDI	GCAATG	1 cut(s)	224
BsrFI	RCCGGY	2 cut(s)	107, 179
BsrI	ACTGG	2 cut(s)	446, 712
BssAI	RCCGGY	2 cut(s)	107, 179
BssECI	CCNNGG	4 cut(s)	63, 115, 406, 719
BssMI	GATC	3 cut(s)	274, 603, 799
BssNI	GRCGYC	1 cut(s)	111
BssT1I	CCWWGG	3 cut(s)	63, 406, 719
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	2 cut(s)	797, 900
BstACI	GRCGYC	1 cut(s)	111
BstC8I	GCNNGC	6 cut(s)	153, 157, 161, 203, 564, 729
BstDEI	CTNAG	1 cut(s)	732
BstDSI	CCRYGG	1 cut(s)	406
BstF5I	GGATG	2 cut(s)	678, 845
BstH2I	RGCGCY	2 cut(s)	24, 354
BstHHI	GCGC	2 cut(s)	23, 353
BstKTI	GATC	3 cut(s)	277, 606, 802
BstMAI	GTCTC	2 cut(s)	97, 804
BstMBI	GATC	3 cut(s)	274, 603, 799
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 117, 165, 689
BstNI	CCWGG	1 cut(s)	116
BstNSI	RCATGY	1 cut(s)	205
BstPAI	GACNNNNGTC	1 cut(s)	110
BstSCI	CCNGG	1 cut(s)	114
BstV1I	GCAGC	2 cut(s)	10, 496
BsuI	GTATCC	1 cut(s)	776
BsuRI	GGCC	2 cut(s)	120, 405
BtgI	CCRYGG	1 cut(s)	406
BtsCI	GGATG	2 cut(s)	678, 845
BtsI	GCAGTG	1 cut(s)	654
BtsIMutI	CAGTG	2 cut(s)	453, 654
Cac8I	GCNNGC	6 cut(s)	153, 157, 161, 203, 564, 729
CfoI	GCGC	2 cut(s)	23, 353
Cfr10I	RCCGGY	2 cut(s)	107, 179
Cfr13I	GGNCC	2 cut(s)	105, 118
CseI	GACGC	2 cut(s)	82, 100
Csp6I	GTAC	2 cut(s)	760, 868
CspAI	ACCGGT	1 cut(s)	179
CviAII	CATG	4 cut(s)	202, 292, 407, 787
CviQI	GTAC	2 cut(s)	760, 868
DdeI	CTNAG	1 cut(s)	732
DpnI	GATC	3 cut(s)	276, 605, 801
DpnII	GATC	3 cut(s)	274, 603, 799
EaeI	YGGCCR	1 cut(s)	403
EciI	GGCGGA	1 cut(s)	24
Eco130I	CCWWGG	3 cut(s)	63, 406, 719
Eco47I	GGWCC	1 cut(s)	105
Eco47III	AGCGCT	1 cut(s)	22
Eco57I	CTGAAG	2 cut(s)	481, 863
EcoRII	CCWGG	1 cut(s)	114
EcoT14I	CCWWGG	3 cut(s)	63, 406, 719
EcoT22I	ATGCAT	1 cut(s)	293
ErhI	CCWWGG	3 cut(s)	63, 406, 719
Esp3I	CGTCTC	1 cut(s)	97
FaeI	CATG	4 cut(s)	205, 295, 410, 790
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	4 cut(s)	201, 291, 406, 786
FauI	CCCGC	2 cut(s)	19, 338
FbaI	TGATCA	1 cut(s)	799
Fnu4HI	GCNGC	2 cut(s)	24, 510
FokI	GGATG	2 cut(s)	685, 832
Fsp4HI	GCNGC	2 cut(s)	24, 510
FspBI	CTAG	1 cut(s)	440
GlaI	GCGC	2 cut(s)	22, 352
GluI	GCNGC	2 cut(s)	24, 510
HaeII	RGCGCY	2 cut(s)	24, 354
HaeIII	GGCC	2 cut(s)	120, 405
HapII	CCGG	2 cut(s)	108, 180
HgaI	GACGC	2 cut(s)	82, 100
HhaI	GCGC	2 cut(s)	23, 353
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	4 cut(s)	205, 295, 410, 790
Hin6I	GCGC	2 cut(s)	21, 351
HinP1I	GCGC	2 cut(s)	21, 351
HinfI	GANTC	5 cut(s)	138, 248, 320, 411, 774
HpaII	CCGG	2 cut(s)	108, 180
HphI	GGTGA	5 cut(s)	169, 284, 556, 587, 809
Hpy166II	GTNNAC	1 cut(s)	760
Hpy188I	TCNGA	5 cut(s)	72, 80, 241, 315, 735
Hpy188III	TCNNGA	1 cut(s)	670
Hpy8I	GTNNAC	1 cut(s)	760
HpyAV	CCTTC	5 cut(s)	131, 291, 505, 887, 894
HpyCH4III	ACNGT	2 cut(s)	797, 900
HpyCH4IV	ACGT	1 cut(s)	866
HpyCH4V	TGCA	6 cut(s)	201, 217, 236, 291, 519, 635
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 117, 165, 689
HpyF3I	CTNAG	1 cut(s)	732
HpySE526I	ACGT	1 cut(s)	866
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	4 cut(s)	205, 295, 410, 790
HspAI	GCGC	2 cut(s)	21, 351
Ksp22I	TGATCA	1 cut(s)	799
Kzo9I	GATC	3 cut(s)	274, 603, 799
LmnI	GCTCC	1 cut(s)	210
Lsp1109I	GCAGC	2 cut(s)	10, 496
LweI	GCATC	1 cut(s)	245
MaeI	CTAG	1 cut(s)	440
MaeII	ACGT	1 cut(s)	866
MaeIII	GTNAC	2 cut(s)	175, 862
MalI	GATC	3 cut(s)	276, 605, 801
MboI	GATC	3 cut(s)	274, 603, 799
MboII	GAAGA	2 cut(s)	254, 257
MfeI	CAATTG	1 cut(s)	537
MlsI	TGGCCA	1 cut(s)	405
MluCI	AATT	6 cut(s)	230, 421, 453, 520, 537, 838
MluNI	TGGCCA	1 cut(s)	405
MlyI	GAGTC	1 cut(s)	405
MnlI	CCTC	7 cut(s)	45, 218, 565, 614, 632, 655, 703
Mox20I	TGGCCA	1 cut(s)	405
Mph1103I	ATGCAT	1 cut(s)	293
MscI	TGGCCA	1 cut(s)	405
MseI	TTAA	2 cut(s)	258, 420
Msp20I	TGGCCA	1 cut(s)	405
MspI	CCGG	2 cut(s)	108, 180
MspR9I	CCNGG	1 cut(s)	116
MunI	CAATTG	1 cut(s)	537
Mva1269I	GAATGC	1 cut(s)	293
MvaI	CCWGG	1 cut(s)	116
MwoI	GCNNNNNNNGC	4 cut(s)	56, 117, 165, 689
NcoI	CCATGG	1 cut(s)	406
NdeII	GATC	3 cut(s)	274, 603, 799
NlaIII	CATG	4 cut(s)	205, 295, 410, 790
NlaIV	GGNNCC	2 cut(s)	33, 106
NmeAIII	GCCGAG	1 cut(s)	144
NmuCI	GTSAC	1 cut(s)	175
NsiI	ATGCAT	1 cut(s)	293
NspI	RCATGY	1 cut(s)	205
PaeI	GCATGC	1 cut(s)	205
PctI	GAATGC	1 cut(s)	293
PfeI	GAWTC	4 cut(s)	138, 248, 320, 774
PinAI	ACCGGT	1 cut(s)	179
PkrI	GCNGC	2 cut(s)	25, 511
PleI	GAGTC	1 cut(s)	405
PpsI	GAGTC	1 cut(s)	405
PshAI	GACNNNNGTC	1 cut(s)	110
Psp6I	CCWGG	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	2 cut(s)	33, 106
PspPI	GGNCC	2 cut(s)	105, 118
RsaI	GTAC	2 cut(s)	761, 869
RsaNI	GTAC	2 cut(s)	760, 868
SaqAI	TTAA	2 cut(s)	258, 420
SatI	GCNGC	2 cut(s)	24, 510
Sau3AI	GATC	3 cut(s)	274, 603, 799
Sau96I	GGNCC	2 cut(s)	105, 118
SchI	GAGTC	1 cut(s)	405
ScrFI	CCNGG	1 cut(s)	116
SetI	ASST	7 cut(s)	69, 307, 475, 725, 864, 869, 879
SfaNI	GCATC	1 cut(s)	245
SinI	GGWCC	1 cut(s)	105
SphI	GCATGC	1 cut(s)	205
Sse9I	AATT	6 cut(s)	230, 421, 453, 520, 537, 838
SsiI	CCGC	3 cut(s)	9, 26, 345
SspI	AATATT	1 cut(s)	385
SspMI	CTAG	1 cut(s)	440
StyD4I	CCNGG	1 cut(s)	114
StyI	CCWWGG	3 cut(s)	63, 406, 719
TaaI	ACNGT	2 cut(s)	797, 900
TaiI	ACGT	1 cut(s)	869
TaqI	TCGA	1 cut(s)	42
TasI	AATT	6 cut(s)	230, 421, 453, 520, 537, 838
TfiI	GAWTC	4 cut(s)	138, 248, 320, 774
Tru1I	TTAA	2 cut(s)	258, 420
Tru9I	TTAA	2 cut(s)	258, 420
TscAI	CASTG	2 cut(s)	453, 654
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	2 cut(s)	23, 509
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	3 cut(s)	300, 378, 713
TspGWI	ACGGA	1 cut(s)	114
TspRI	CASTG	2 cut(s)	453, 654
VpaK11BI	GGWCC	1 cut(s)	105
XapI	RAATTY	1 cut(s)	230
XceI	RCATGY	1 cut(s)	205
XspI	CTAG	1 cut(s)	440
Zsp2I	ATGCAT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.