Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000775.1

Orthogroup ID

OG0012445

Physical Location & Seq

Genomic Coordinates Reverse (-)

35918 .. 39925

Gene Structure 4008 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000775.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

atggggggcggaaaaccaagcgctgcgggggttcctctgctcgaaaaggctgtgggggcttccaaggttcagacgctcggaaacataatcgtctcggttgttgggaccggcgtcttgggccttccgtatgctttgcgaatcgctggttggcttgctggctcgctcggcgttattgtcaccggtcttacaacatattactgcatgctcctccttgtgcaatgtagggagaaatttgcatcggaagaagattcaatggttaaaaagtcgtatggtgatctggggtatgaatgcatgggaaggaaaggtcgttatctgactgaatccttgattttgattgctcaatgcgggggcgctgtggcctatcttgtgtttgtaggacaaaatatttcatctatgttcaatggccatggactctcggttaattcctgtatatttttgctagtgccagtggaaattgggttatcttggataggtagtctatctgctttagcacccttcagtatctttgctgccatctgcaatttgttggctatggcaattgtggtgaagcaagacatacagcaagcagtagagggtgagttttcttttagggataggacggcgatcacatcaaatataggagggttgccatttgcaggaggcgtggcagtgttttgttttgaggggttcgggatgacattggctttggaagcctctatgaaagataaaacccagttcccaaggttgcttgctcagactttcacagggataagcattgtgtacgctttatttggattctttggatacttggcttacggtgatcaaacgagagacattatcactctcaatctcccccgaaattggtcatccatagccgttcagattggcttgtgcttgggtttaatatttacattcccgatcatgctccacccaataaacgagatcatagagggaaacttaacaaaagattcatctacaagaatgggaaaattgggagtatacatgagtcgagcaatggtggtgatggtgttggctgtcttggcctcatgtgtgccaggatttgcagtgtttgcctcacttgtgggaagtacaaagtcatcggagaccttgccggactccggtgaccggcggccggccgcagcctctagtggcggaatccggcaactggtgactggaatccggccagtgactagaatctggccaacggactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0009605 GO:0009607 GO:0009624 GO:0012505 GO:0015075 GO:0015171 GO:0015173 GO:0015175 GO:0015318 GO:0015711 GO:0015801 GO:0015804 GO:0015849 GO:0016020 GO:0022857 GO:0031984 GO:0034220 GO:0042175 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0071702 GO:0071705 GO:0098656 GO:0098827 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04138 map04138

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

396

Amino Acids

42.0

Weight (kDa)

8.52

Isoelectric Point (pI)

37.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012445)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11900 AT3G11900
fragaria_vesca	FvH4_6g21140 FvH4_6g21140 FvH4_6g21140
malus_domestica	MD12G1047000.v1.1
prunus_persica	Prupe.7G088200_v2.0.a1 Prupe.7G088200_v2.0.a1
pyrus_communis	pycom12g04050
rosa_chinensis	RchiOBHm_Chr3g0477611
rosa_laevigata	RLG00000023706
rosa_multiflora	Rmu_sc0000775.1_g000010
rosa_roxburghii	Rroxscaffold_6G00403830
rosa_rugosa	Rorug03G0162300
rosa_samantha	Rh3AG212300 Rh3BG246000 Rh3CG239600 Rh3DG239100
rosa_wichuraiana	Rw3G019220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	978
AciI	CCGC	6 cut(s)	9, 26, 345, 1108, 1116, 1131
AcoI	YGGCCR	5 cut(s)	403, 1109, 1113, 1160, 1178
AcsI	RAATTY	1 cut(s)	230
AcuI	CTGAAG	1 cut(s)	481
AcyI	GRCGYC	1 cut(s)	111
AfaI	GTAC	2 cut(s)	761, 1069
AfeI	AGCGCT	1 cut(s)	22
AfiI	CCNNNNNNNGG	6 cut(s)	635, 840, 1097, 1104, 1111, 1144
AgeI	ACCGGT	1 cut(s)	179
AgsI	TTSAA	2 cut(s)	252, 400
AjnI	CCWGG	1 cut(s)	1033
AjuI	GAANNNNNNNTTGG	2 cut(s)	130, 162
Alw26I	GTCTC	3 cut(s)	97, 804, 1076
Aor51HI	AGCGCT	1 cut(s)	22
AoxI	GGCC	8 cut(s)	118, 357, 403, 1020, 1109, 1113, 1160, 1178
ApeKI	GCWGC	3 cut(s)	23, 509, 1118
ApoI	RAATTY	1 cut(s)	230
ArsI	GACNNNNNNTTYG	2 cut(s)	667, 699
AsiGI	ACCGGT	1 cut(s)	179
AspLEI	GCGC	2 cut(s)	23, 353
AspS9I	GGNCC	2 cut(s)	105, 118
AsuHPI	GGTGA	8 cut(s)	169, 284, 556, 587, 809, 1012, 1112, 1159
AvaII	GGWCC	1 cut(s)	105
BalI	TGGCCA	2 cut(s)	405, 1180
BbvI	GCAGC	3 cut(s)	10, 496, 1130
BccI	CCATC	2 cut(s)	521, 997
BceAI	ACGGC	2 cut(s)	615, 839
BciT130I	CCWGG	1 cut(s)	1035
BciVI	GTATCC	1 cut(s)	776
BclI	TGATCA	1 cut(s)	799
BcoDI	GTCTC	3 cut(s)	97, 804, 1076
BfaI	CTAG	4 cut(s)	440, 1125, 1170, 1189
BfoI	RGCGCY	2 cut(s)	24, 354
BfuI	GTATCC	1 cut(s)	776
BisI	GCNGC	5 cut(s)	24, 510, 1109, 1116, 1119
BlsI	GCNGC	5 cut(s)	25, 511, 1110, 1117, 1120
Bme1390I	CCNGG	1 cut(s)	1035
Bme18I	GGWCC	1 cut(s)	105
BmgT120I	GGNCC	2 cut(s)	105, 118
BmiI	GGNNCC	2 cut(s)	33, 106
BmrFI	CCNGG	1 cut(s)	1035
BmrI	ACTGGG	1 cut(s)	706
BmsI	GCATC	1 cut(s)	245
BmuI	ACTGGG	1 cut(s)	706
BoxI	GACNNNNGTC	1 cut(s)	110
BsaHI	GRCGYC	1 cut(s)	111
BsaI	GGTCTC	1 cut(s)	1076
BsaJI	CCNNGG	3 cut(s)	63, 406, 719
BsaWI	WCCGGW	2 cut(s)	179, 1097
Bsc4I	CCNNNNNNNGG	6 cut(s)	635, 840, 1097, 1104, 1111, 1144
Bse118I	RCCGGY	4 cut(s)	107, 179, 1104, 1111
Bse1I	ACTGG	5 cut(s)	446, 712, 1149, 1156, 1163
Bse3DI	GCAATG	2 cut(s)	224, 999
BseBI	CCWGG	1 cut(s)	1035
BseDI	CCNNGG	3 cut(s)	63, 406, 719
BseGI	GGATG	2 cut(s)	678, 845
BseLI	CCNNNNNNNGG	6 cut(s)	635, 840, 1097, 1104, 1111, 1144
BseMI	GCAATG	2 cut(s)	224, 999
BseMII	CTCAG	1 cut(s)	746
BseNI	ACTGG	5 cut(s)	446, 712, 1149, 1156, 1163
BseRI	GAGGAG	1 cut(s)	197
BseX3I	CGGCCG	2 cut(s)	1109, 1113
BseXI	GCAGC	3 cut(s)	10, 496, 1130
Bsh1285I	CGRYCG	2 cut(s)	1112, 1116
BshFI	GGCC	8 cut(s)	120, 359, 405, 1022, 1111, 1115, 1162, 1180
BshTI	ACCGGT	1 cut(s)	179
BsiEI	CGRYCG	2 cut(s)	1112, 1116
BsiSI	CCGG	8 cut(s)	108, 180, 1091, 1098, 1105, 1112, 1138, 1159
BslFI	GGGAC	1 cut(s)	118
BslI	CCNNNNNNNGG	6 cut(s)	635, 840, 1097, 1104, 1111, 1144
BsmAI	GTCTC	3 cut(s)	97, 804, 1076
BsmBI	CGTCTC	1 cut(s)	97
BsmFI	GGGAC	1 cut(s)	118
BsmI	GAATGC	1 cut(s)	293
BsnI	GGCC	8 cut(s)	120, 359, 405, 1022, 1111, 1115, 1162, 1180
Bso31I	GGTCTC	1 cut(s)	1076
Bsp143I	GATC	5 cut(s)	274, 603, 799, 897, 921
Bsp19I	CCATGG	1 cut(s)	406
BspACI	CCGC	6 cut(s)	9, 26, 345, 1108, 1116, 1131
BspANI	GGCC	8 cut(s)	120, 359, 405, 1022, 1111, 1115, 1162, 1180
BspCNI	CTCAG	1 cut(s)	745
BspLI	GGNNCC	2 cut(s)	33, 106
BspTNI	GGTCTC	1 cut(s)	1076
BsrDI	GCAATG	2 cut(s)	224, 999
BsrFI	RCCGGY	4 cut(s)	107, 179, 1104, 1111
BsrI	ACTGG	5 cut(s)	446, 712, 1149, 1156, 1163
BssAI	RCCGGY	4 cut(s)	107, 179, 1104, 1111
BssECI	CCNNGG	3 cut(s)	63, 406, 719
BssMI	GATC	5 cut(s)	274, 603, 799, 897, 921
BssNAI	GTATAC	1 cut(s)	979
BssNI	GRCGYC	1 cut(s)	111
BssT1I	CCWWGG	3 cut(s)	63, 406, 719
Bst1107I	GTATAC	1 cut(s)	979
Bst2UI	CCWGG	1 cut(s)	1035
Bst4CI	ACNGT	1 cut(s)	797
BstACI	GRCGYC	1 cut(s)	111
BstAPI	GCANNNNNTGC	1 cut(s)	1049
BstC8I	GCNNGC	7 cut(s)	153, 157, 161, 203, 564, 729, 1113
BstDEI	CTNAG	1 cut(s)	732
BstDSI	CCRYGG	1 cut(s)	406
BstEII	GGTNACC	1 cut(s)	1100
BstF5I	GGATG	2 cut(s)	678, 845
BstH2I	RGCGCY	2 cut(s)	24, 354
BstHHI	GCGC	2 cut(s)	23, 353
BstKTI	GATC	5 cut(s)	277, 606, 802, 900, 924
BstMAI	GTCTC	3 cut(s)	97, 804, 1076
BstMBI	GATC	5 cut(s)	274, 603, 799, 897, 921
BstMCI	CGRYCG	2 cut(s)	1112, 1116
BstMWI	GCNNNNNNNGC	6 cut(s)	56, 117, 165, 689, 1019, 1049
BstNI	CCWGG	1 cut(s)	1035
BstNSI	RCATGY	1 cut(s)	205
BstPAI	GACNNNNGTC	1 cut(s)	110
BstPI	GGTNACC	1 cut(s)	1100
BstSCI	CCNGG	1 cut(s)	1033
BstV1I	GCAGC	3 cut(s)	10, 496, 1130
BstZ17I	GTATAC	1 cut(s)	979
BstZI	CGGCCG	2 cut(s)	1109, 1113
BsuI	GTATCC	1 cut(s)	776
BsuRI	GGCC	8 cut(s)	120, 359, 405, 1022, 1111, 1115, 1162, 1180
BtgI	CCRYGG	1 cut(s)	406
BtsCI	GGATG	2 cut(s)	678, 845
BtsI	GCAGTG	2 cut(s)	654, 1050
BtsIMutI	CAGTG	4 cut(s)	453, 654, 1050, 1170
Cac8I	GCNNGC	7 cut(s)	153, 157, 161, 203, 564, 729, 1113
CfoI	GCGC	2 cut(s)	23, 353
Cfr10I	RCCGGY	4 cut(s)	107, 179, 1104, 1111
Cfr13I	GGNCC	2 cut(s)	105, 118
CseI	GACGC	2 cut(s)	82, 100
Csp6I	GTAC	2 cut(s)	760, 1068
CspAI	ACCGGT	1 cut(s)	179
CviAII	CATG	6 cut(s)	202, 292, 407, 901, 982, 1026
CviQI	GTAC	2 cut(s)	760, 1068
DdeI	CTNAG	1 cut(s)	732
DpnI	GATC	5 cut(s)	276, 605, 801, 899, 923
DpnII	GATC	5 cut(s)	274, 603, 799, 897, 921
EaeI	YGGCCR	5 cut(s)	403, 1109, 1113, 1160, 1178
EagI	CGGCCG	2 cut(s)	1109, 1113
EciI	GGCGGA	2 cut(s)	24, 1146
EclXI	CGGCCG	2 cut(s)	1109, 1113
Eco130I	CCWWGG	3 cut(s)	63, 406, 719
Eco31I	GGTCTC	1 cut(s)	1076
Eco47I	GGWCC	1 cut(s)	105
Eco47III	AGCGCT	1 cut(s)	22
Eco52I	CGGCCG	2 cut(s)	1109, 1113
Eco57I	CTGAAG	1 cut(s)	481
Eco91I	GGTNACC	1 cut(s)	1100
EcoO65I	GGTNACC	1 cut(s)	1100
EcoRII	CCWGG	1 cut(s)	1033
EcoT14I	CCWWGG	3 cut(s)	63, 406, 719
EcoT22I	ATGCAT	1 cut(s)	293
ErhI	CCWWGG	3 cut(s)	63, 406, 719
Esp3I	CGTCTC	1 cut(s)	97
FaeI	CATG	6 cut(s)	205, 295, 410, 904, 985, 1029
FaqI	GGGAC	1 cut(s)	118
FatI	CATG	6 cut(s)	201, 291, 406, 900, 981, 1025
FauI	CCCGC	2 cut(s)	19, 338
FbaI	TGATCA	1 cut(s)	799
FblI	GTMKAC	1 cut(s)	978
Fnu4HI	GCNGC	5 cut(s)	24, 510, 1109, 1116, 1119
FokI	GGATG	2 cut(s)	685, 832
FseI	GGCCGGCC	1 cut(s)	1115
Fsp4HI	GCNGC	5 cut(s)	24, 510, 1109, 1116, 1119
FspBI	CTAG	4 cut(s)	440, 1125, 1170, 1189
GlaI	GCGC	2 cut(s)	22, 352
GluI	GCNGC	5 cut(s)	24, 510, 1109, 1116, 1119
HaeII	RGCGCY	2 cut(s)	24, 354
HaeIII	GGCC	8 cut(s)	120, 359, 405, 1022, 1111, 1115, 1162, 1180
HapII	CCGG	8 cut(s)	108, 180, 1091, 1098, 1105, 1112, 1138, 1159
HgaI	GACGC	2 cut(s)	82, 100
HhaI	GCGC	2 cut(s)	23, 353
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	6 cut(s)	205, 295, 410, 904, 985, 1029
Hin6I	GCGC	2 cut(s)	21, 351
HinP1I	GCGC	2 cut(s)	21, 351
HpaII	CCGG	8 cut(s)	108, 180, 1091, 1098, 1105, 1112, 1138, 1159
HphI	GGTGA	8 cut(s)	169, 284, 556, 587, 809, 1012, 1112, 1159
Hpy166II	GTNNAC	2 cut(s)	760, 979
Hpy188I	TCNGA	7 cut(s)	72, 80, 241, 315, 735, 861, 1081
Hpy188III	TCNNGA	2 cut(s)	670, 895
Hpy8I	GTNNAC	2 cut(s)	760, 979
HpyAV	CCTTC	3 cut(s)	131, 291, 505
HpyCH4III	ACNGT	1 cut(s)	797
HpyCH4V	TGCA	7 cut(s)	201, 217, 236, 291, 519, 635, 1043
HpyF10VI	GCNNNNNNNGC	6 cut(s)	56, 117, 165, 689, 1019, 1049
HpyF3I	CTNAG	1 cut(s)	732
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	6 cut(s)	205, 295, 410, 904, 985, 1029
HspAI	GCGC	2 cut(s)	21, 351
KroI	GCCGGC	1 cut(s)	1111
KroNI	GCCGGC	1 cut(s)	1113
Ksp22I	TGATCA	1 cut(s)	799
Kzo9I	GATC	5 cut(s)	274, 603, 799, 897, 921
LmnI	GCTCC	2 cut(s)	210, 909
Lsp1109I	GCAGC	3 cut(s)	10, 496, 1130
LweI	GCATC	1 cut(s)	245
MaeI	CTAG	4 cut(s)	440, 1125, 1170, 1189
MaeIII	GTNAC	4 cut(s)	175, 1100, 1147, 1165
MalI	GATC	5 cut(s)	276, 605, 801, 899, 923
MboI	GATC	5 cut(s)	274, 603, 799, 897, 921
MboII	GAAGA	2 cut(s)	254, 257
MfeI	CAATTG	1 cut(s)	537
MlsI	TGGCCA	2 cut(s)	405, 1180
MluCI	AATT	7 cut(s)	230, 421, 453, 520, 537, 838, 968
MluNI	TGGCCA	2 cut(s)	405, 1180
MlyI	GAGTC	3 cut(s)	405, 994, 1088
Mox20I	TGGCCA	2 cut(s)	405, 1180
Mph1103I	ATGCAT	1 cut(s)	293
MroNI	GCCGGC	1 cut(s)	1111
MscI	TGGCCA	2 cut(s)	405, 1180
MseI	TTAA	4 cut(s)	258, 420, 881, 938
Msp20I	TGGCCA	2 cut(s)	405, 1180
MspI	CCGG	8 cut(s)	108, 180, 1091, 1098, 1105, 1112, 1138, 1159
MspR9I	CCNGG	1 cut(s)	1035
MunI	CAATTG	1 cut(s)	537
Mva1269I	GAATGC	1 cut(s)	293
MvaI	CCWGG	1 cut(s)	1035
MwoI	GCNNNNNNNGC	6 cut(s)	56, 117, 165, 689, 1019, 1049
NaeI	GCCGGC	1 cut(s)	1113
NcoI	CCATGG	1 cut(s)	406
NdeII	GATC	5 cut(s)	274, 603, 799, 897, 921
NgoMIV	GCCGGC	1 cut(s)	1111
NlaIII	CATG	6 cut(s)	205, 295, 410, 904, 985, 1029
NlaIV	GGNNCC	2 cut(s)	33, 106
NmeAIII	GCCGAG	1 cut(s)	144
NmuCI	GTSAC	4 cut(s)	175, 1100, 1147, 1165
NsiI	ATGCAT	1 cut(s)	293
NspI	RCATGY	1 cut(s)	205
PaeI	GCATGC	1 cut(s)	205
PctI	GAATGC	1 cut(s)	293
PdiI	GCCGGC	1 cut(s)	1113
PfeI	GAWTC	8 cut(s)	138, 248, 320, 774, 947, 1134, 1155, 1173
PinAI	ACCGGT	1 cut(s)	179
PkrI	GCNGC	5 cut(s)	25, 511, 1110, 1117, 1120
PleI	GAGTC	3 cut(s)	405, 993, 1088
PpsI	GAGTC	3 cut(s)	405, 993, 1088
PshAI	GACNNNNGTC	1 cut(s)	110
Psp6I	CCWGG	1 cut(s)	1033
PspEI	GGTNACC	1 cut(s)	1100
PspGI	CCWGG	1 cut(s)	1033
PspN4I	GGNNCC	2 cut(s)	33, 106
PspPI	GGNCC	2 cut(s)	105, 118
RigI	GGCCGGCC	1 cut(s)	1115
RsaI	GTAC	2 cut(s)	761, 1069
RsaNI	GTAC	2 cut(s)	760, 1068
SaqAI	TTAA	4 cut(s)	258, 420, 881, 938
SatI	GCNGC	5 cut(s)	24, 510, 1109, 1116, 1119
Sau3AI	GATC	5 cut(s)	274, 603, 799, 897, 921
Sau96I	GGNCC	2 cut(s)	105, 118
SchI	GAGTC	3 cut(s)	405, 994, 1088
ScrFI	CCNGG	1 cut(s)	1035
SetI	ASST	5 cut(s)	69, 307, 475, 725, 1088
SfaNI	GCATC	1 cut(s)	245
SinI	GGWCC	1 cut(s)	105
SphI	GCATGC	1 cut(s)	205
Sse9I	AATT	7 cut(s)	230, 421, 453, 520, 537, 838, 968
SsiI	CCGC	6 cut(s)	9, 26, 345, 1108, 1116, 1131
SspI	AATATT	2 cut(s)	385, 885
SspMI	CTAG	4 cut(s)	440, 1125, 1170, 1189
StyD4I	CCNGG	1 cut(s)	1033
StyI	CCWWGG	3 cut(s)	63, 406, 719
TaaI	ACNGT	1 cut(s)	797
TaqI	TCGA	2 cut(s)	42, 988
TasI	AATT	7 cut(s)	230, 421, 453, 520, 537, 838, 968
TatI	WGTACW	1 cut(s)	1067
TauI	GCSGC	2 cut(s)	1111, 1118
TfiI	GAWTC	8 cut(s)	138, 248, 320, 774, 947, 1134, 1155, 1173
Tru1I	TTAA	4 cut(s)	258, 420, 881, 938
Tru9I	TTAA	4 cut(s)	258, 420, 881, 938
TscAI	CASTG	4 cut(s)	453, 654, 1050, 1170
TseFI	GTSAC	4 cut(s)	175, 1100, 1147, 1165
TseI	GCWGC	3 cut(s)	23, 509, 1118
Tsp45I	GTSAC	4 cut(s)	175, 1100, 1147, 1165
TspDTI	ATGAA	4 cut(s)	300, 378, 713, 939
TspGWI	ACGGA	1 cut(s)	114
TspRI	CASTG	4 cut(s)	453, 654, 1050, 1170
VpaK11BI	GGWCC	1 cut(s)	105
XapI	RAATTY	1 cut(s)	230
XceI	RCATGY	1 cut(s)	205
XmiI	GTMKAC	1 cut(s)	978
XspI	CTAG	4 cut(s)	440, 1125, 1170, 1189
Zsp2I	ATGCAT	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.