AT3G12570

SLT1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0007681
Physical Location & Seq
Forward (+)
3988590 .. 3991079
2490 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G12570.1

Sequence Viewer

Length: 1470 bp
ATGGGTGAGACTCTCATCACCACCCTGTCTATGGAGAACTATCACCCGTCAACACTGCTATCCATGGATTCAGGTGCTTTTACTCATGAAGAATCAGAGAGGGATATGAATGGGTCTCTCATACTTACTGGACCGCCTGATATTAATCTACCACTCTCTTCTGAAGCTAGGCCATCTCTGCTTTTGTGGAACGAACACTGTGACATCTTAGACGTTGGACTTGGACCTCAGCTATATGAGCCTGAGGCTGTTGTTCATGTGCCTAAGGTTGCTAAGAAGTACAACAAGCGTGTTGATAGTGCATGGGGTGCTTGGCTTTTCTTCAGTTTCTACTTCAAACCTGTTTTGGATGAGAAGTCTAAAAGTAAGTTAACGAGGGACAGCAATGGCTTGTCTGGGTATGATAAATCTGATTTGCAGCTCGACTCGTTCTTGGTTCAGCATGACATGGAGAATATGTACATGTGGGTGTTCAAGGAAAAGCCTGAAAATGCCCTTGGCAAGATGCAGCTGCGGAGCTACATGAACGGACACTCACGCGAGGGTGAGCGTCCTTTCCCTTTTAGTGTGGACAAAGGTTTTGTCCGCTCTCATAGGATGCAGAGGAAACATTACCGTGGTCTCTCTAACCCACAGTGCCTCCATGGAATCGAAGTTGTTTATTCACCCAACCTTTCTGTACTCAGCGAGGATGAAAAGAAGAAGTGGACAGAACTCACAGGTCGAGATGTGAACTTTGCTATTCCAGCTGAAGCTAGTGATTACGGTTCATGGAGGAATCTCCCAAACACCGAATTTGAGGCTGAGAGACCTCTTCCTCTGGCTAAAGCTAACGGGCACACCCACCTGAAAAAGCTGAATGGTACCTGTCTAAACCTGTCTACACATTCCCCAGACCATGCAGTTGATACAGTGGAAGTTCAACTCGCTGGTAGCAATAAACGCAAAAGGGATTGTCTTGCTCTAGGAAACTGCGATGACTCGAGCTCAAGTGAGAAATCTCTGGACATGAAAATCCATGCAACGGAGCTGCCTTGGTCAAATGATTTTAGCGGGGTGATGAAGAATGTGTACGGTCCAGTCACAGCCGCAAAAACGATATATGAAGACGACAGAGGGTTCTTGATAGTTATGAGCCTGCCATTTGTTGATTCCGGAAGGGTGAAAGTGACATGGAGGAATACACCAGCACATGGAATAGTGAAGATATCATGTGTAAGTACAGCATGTGAGCCATTCATCAAGAGACATGATAGAACATTTAAGCTAACAGATCCAACACCAGAGCATTGCCCACCGGGGGAATTTGTCCGCGAAGTCTCCCTGCCGAACAGGATTCCAGATGACGCCAAGCTTGAAGCTTACCGGGACGAAACAGGAACAACACTAGAGGTTTTAGTGCCTAAACACCGAATGGGACCAGAGGAGCATGAGGTTCGCGTCTGTCTCCGTCCGTTCGTGCTAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

489

Amino Acids

55.28

Weight (kDa)

6.04

Isoelectric Point (pI)

39.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8041 PF26145 94 - 259 1.4e-98 Domain of unknown function (DUF8041)
ACL_Hsps-like PF26144 361 - 469 4e-56 Hsps-like alpha-crystallin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 863
AccB1I GGYRCC 1 cut(s) 863
AccB7I CCANNNNNTGG 1 cut(s) 1193
AccBSI CCGCTC 1 cut(s) 588
AccI GTMKAC 1 cut(s) 881
AccII CGCG 3 cut(s) 540, 1314, 1440
AccIII TCCGGA 1 cut(s) 1154
AciI CCGC 6 cut(s) 134, 514, 586, 1053, 1089, 1312
AclWI GGATC 1 cut(s) 1268
AcsI RAATTY 2 cut(s) 794, 1304
AcuI CTGAAG 3 cut(s) 183, 307, 771
AcyI GRCGYC 1 cut(s) 1347
AfaI GTAC 6 cut(s) 281, 461, 681, 865, 1073, 1222
AfiI CCNNNNNNNGG 4 cut(s) 31, 1024, 1193, 1300
AflIII ACRYGT 1 cut(s) 462
AgsI TTSAA 4 cut(s) 337, 475, 923, 1358
AjuI GAANNNNNNNTTGG 2 cut(s) 480, 512
Alw21I GWGCWC 1 cut(s) 989
Alw26I GTCTC 7 cut(s) 2, 120, 626, 802, 1240, 1324, 1451
AlwI GGATC 1 cut(s) 1268
Ama87I CYCGRG 1 cut(s) 982
Aor13HI TCCGGA 1 cut(s) 1154
AoxI GGCC 1 cut(s) 170
ApeKI GCWGC 4 cut(s) 418, 508, 511, 1030
ApoI RAATTY 2 cut(s) 794, 1304
ArsI GACNNNNNNTTYG 4 cut(s) 563, 567, 595, 599
AseI ATTAAT 1 cut(s) 144
Asp718I GGTACC 1 cut(s) 863
AspS9I GGNCC 4 cut(s) 131, 224, 1076, 1418
AsuC2I CCSGG 2 cut(s) 1299, 1367
AsuHPI GGTGA 7 cut(s) 10, 17, 35, 557, 657, 1069, 1174
AvaI CYCGRG 1 cut(s) 982
AvaII GGWCC 4 cut(s) 131, 224, 1076, 1418
AxyI CCTNAGG 2 cut(s) 243, 264
BaeGI GKGCMC 1 cut(s) 840
BanI GGYRCC 1 cut(s) 863
BanII GRGCYC 1 cut(s) 989
BarI GAAGNNNNNNTAC 2 cut(s) 1055, 1087
BbsI GAAGAC 1 cut(s) 1113
Bbv12I GWGCWC 1 cut(s) 989
BbvCI CCTCAGC 1 cut(s) 228
BbvI GCAGC 4 cut(s) 430, 498, 520, 1017
BccI CCATC 1 cut(s) 181
BcgI CGANNNNNNTGC 2 cut(s) 1418, 1452
BcnI CCSGG 2 cut(s) 1299, 1367
BcoDI GTCTC 7 cut(s) 2, 120, 626, 802, 1240, 1324, 1451
BfaI CTAG 5 cut(s) 168, 756, 965, 1388, 1463
BisI GCNGC 5 cut(s) 419, 509, 512, 1031, 1089
BlsI GCNGC 5 cut(s) 420, 510, 513, 1032, 1090
Bme1390I CCNGG 2 cut(s) 1299, 1367
Bme18I GGWCC 4 cut(s) 131, 224, 1076, 1418
BmeT110I CYCGRG 1 cut(s) 982
BmgT120I GGNCC 4 cut(s) 131, 224, 1076, 1418
BmiI GGNNCC 2 cut(s) 865, 1419
BmrFI CCNGG 2 cut(s) 1299, 1367
BmsI GCATC 2 cut(s) 495, 588
BpiI GAAGAC 1 cut(s) 1113
Bpu10I CCTNAGC 1 cut(s) 228
BpuEI CTTGAG 1 cut(s) 973
BpuMI CCSGG 2 cut(s) 1299, 1367
BsaBI GATNNNNATC 1 cut(s) 144
BsaHI GRCGYC 1 cut(s) 1347
BsaI GGTCTC 3 cut(s) 120, 626, 802
BsaJI CCNNGG 6 cut(s) 63, 496, 616, 643, 1034, 1298
BsaWI WCCGGW 1 cut(s) 1154
BsaXI ACNNNNNCTCC 4 cut(s) 443, 473, 624, 654
Bsc4I CCNNNNNNNGG 4 cut(s) 31, 1024, 1193, 1300
Bse1I ACTGG 2 cut(s) 133, 1079
Bse21I CCTNAGG 2 cut(s) 243, 264
Bse3DI GCAATG 2 cut(s) 391, 1288
Bse8I GATNNNNATC 1 cut(s) 144
BseAI TCCGGA 1 cut(s) 1154
BseDI CCNNGG 6 cut(s) 63, 496, 616, 643, 1034, 1298
BseGI GGATG 3 cut(s) 355, 603, 697
BseJI GATNNNNATC 1 cut(s) 144
BseLI CCNNNNNNNGG 4 cut(s) 31, 1024, 1193, 1300
BseMI GCAATG 2 cut(s) 391, 1288
BseMII CTCAG 4 cut(s) 234, 242, 697, 795
BseNI ACTGG 2 cut(s) 133, 1079
BseRI GAGGAG 1 cut(s) 1439
BseSI GKGCMC 1 cut(s) 840
BseXI GCAGC 4 cut(s) 430, 498, 520, 1017
Bsh1236I CGCG 3 cut(s) 540, 1314, 1440
BshFI GGCC 1 cut(s) 172
BshNI GGYRCC 1 cut(s) 863
BsiHKAI GWGCWC 1 cut(s) 989
BsiHKCI CYCGRG 1 cut(s) 982
BsiSI CCGG 3 cut(s) 1155, 1298, 1366
BslFI GGGAC 3 cut(s) 392, 1382, 1431
BslI CCNNNNNNNGG 4 cut(s) 31, 1024, 1193, 1300
BsmAI GTCTC 7 cut(s) 2, 120, 626, 802, 1240, 1324, 1451
BsmFI GGGAC 3 cut(s) 392, 1382, 1431
BsnI GGCC 1 cut(s) 172
Bso31I GGTCTC 3 cut(s) 120, 626, 802
BsoBI CYCGRG 1 cut(s) 982
Bsp1286I GDGCHC 2 cut(s) 840, 989
Bsp13I TCCGGA 1 cut(s) 1154
Bsp1407I TGTACA 1 cut(s) 459
Bsp143I GATC 1 cut(s) 1273
Bsp19I CCATGG 2 cut(s) 63, 643
BspACI CCGC 6 cut(s) 134, 514, 586, 1053, 1089, 1312
BspANI GGCC 1 cut(s) 172
BspCNI CTCAG 4 cut(s) 235, 241, 696, 796
BspEI TCCGGA 1 cut(s) 1154
BspFNI CGCG 3 cut(s) 540, 1314, 1440
BspHI TCATGA 1 cut(s) 85
BspLI GGNNCC 2 cut(s) 865, 1419
BspPI GGATC 1 cut(s) 1268
BspT107I GGYRCC 1 cut(s) 863
BspTNI GGTCTC 3 cut(s) 120, 626, 802
BsrBI CCGCTC 1 cut(s) 588
BsrDI GCAATG 2 cut(s) 391, 1288
BsrGI TGTACA 1 cut(s) 459
BsrI ACTGG 2 cut(s) 133, 1079
BssECI CCNNGG 6 cut(s) 63, 496, 616, 643, 1034, 1298
BssMI GATC 1 cut(s) 1273
BssNI GRCGYC 1 cut(s) 1347
BssT1I CCWWGG 4 cut(s) 63, 496, 643, 1034
Bst4CI ACNGT 6 cut(s) 200, 617, 636, 767, 913, 1076
Bst6I CTCTTC 2 cut(s) 163, 819
BstACI GRCGYC 1 cut(s) 1347
BstAPI GCANNNNNTGC 1 cut(s) 308
BstAUI TGTACA 1 cut(s) 459
BstC8I GCNNGC 1 cut(s) 1139
BstDEI CTNAG 7 cut(s) 208, 228, 243, 264, 273, 683, 804
BstDSI CCRYGG 3 cut(s) 63, 616, 643
BstF5I GGATG 3 cut(s) 355, 603, 697
BstFNI CGCG 3 cut(s) 540, 1314, 1440
BstKTI GATC 1 cut(s) 1276
BstMAI GTCTC 7 cut(s) 2, 120, 626, 802, 1240, 1324, 1451
BstMBI GATC 1 cut(s) 1273
BstMWI GCNNNNNNNGC 5 cut(s) 178, 238, 308, 746, 942
BstNSI RCATGY 2 cut(s) 466, 1230
BstSCI CCNGG 2 cut(s) 1297, 1365
BstSLI GKGCMC 1 cut(s) 840
BstUI CGCG 3 cut(s) 540, 1314, 1440
BstV1I GCAGC 4 cut(s) 430, 498, 520, 1017
BstV2I GAAGAC 1 cut(s) 1113
BstX2I RGATCY 1 cut(s) 1273
BstYI RGATCY 1 cut(s) 1273
Bsu36I CCTNAGG 2 cut(s) 243, 264
BsuRI GGCC 1 cut(s) 172
BtgI CCRYGG 3 cut(s) 63, 616, 643
BtgZI GCGATG 1 cut(s) 990
BtsCI GGATG 3 cut(s) 355, 603, 697
BtsI GCAGTG 1 cut(s) 53
BtsIMutI CAGTG 4 cut(s) 53, 196, 641, 918
Cac8I GCNNGC 1 cut(s) 1139
CciI TCATGA 1 cut(s) 85
Cfr13I GGNCC 4 cut(s) 131, 224, 1076, 1418
CseI GACGC 3 cut(s) 539, 1355, 1429
Csp6I GTAC 6 cut(s) 280, 460, 680, 864, 1072, 1221
CviQI GTAC 6 cut(s) 280, 460, 680, 864, 1072, 1221
DdeI CTNAG 7 cut(s) 208, 228, 243, 264, 273, 683, 804
DpnI GATC 1 cut(s) 1275
DpnII GATC 1 cut(s) 1273
Eam1104I CTCTTC 2 cut(s) 163, 819
EarI CTCTTC 2 cut(s) 163, 819
Ecl136II GAGCTC 1 cut(s) 987
Eco130I CCWWGG 4 cut(s) 63, 496, 643, 1034
Eco24I GRGCYC 1 cut(s) 989
Eco31I GGTCTC 3 cut(s) 120, 626, 802
Eco32I GATATC 1 cut(s) 1209
Eco47I GGWCC 4 cut(s) 131, 224, 1076, 1418
Eco53kI GAGCTC 1 cut(s) 987
Eco57I CTGAAG 3 cut(s) 183, 307, 771
Eco81I CCTNAGG 2 cut(s) 243, 264
Eco88I CYCGRG 1 cut(s) 982
EcoICRI GAGCTC 1 cut(s) 987
EcoRV GATATC 1 cut(s) 1209
EcoT14I CCWWGG 4 cut(s) 63, 496, 643, 1034
EcoT38I GRGCYC 1 cut(s) 989
ErhI CCWWGG 4 cut(s) 63, 496, 643, 1034
FaqI GGGAC 3 cut(s) 392, 1382, 1431
FauI CCCGC 1 cut(s) 1046
FblI GTMKAC 1 cut(s) 881
Fnu4HI GCNGC 5 cut(s) 419, 509, 512, 1031, 1089
FokI GGATG 3 cut(s) 362, 610, 704
FriOI GRGCYC 1 cut(s) 989
Fsp4HI GCNGC 5 cut(s) 419, 509, 512, 1031, 1089
FspBI CTAG 5 cut(s) 168, 756, 965, 1388, 1463
GluI GCNGC 5 cut(s) 419, 509, 512, 1031, 1089
HaeIII GGCC 1 cut(s) 172
HapII CCGG 3 cut(s) 1155, 1298, 1366
HgaI GACGC 3 cut(s) 539, 1355, 1429
Hin1I GRCGYC 1 cut(s) 1347
HincII GTYRAC 2 cut(s) 51, 372
HindII GTYRAC 2 cut(s) 51, 372
HindIII AAGCTT 2 cut(s) 1352, 1359
HinfI GANTC 9 cut(s) 10, 68, 92, 425, 648, 778, 980, 1151, 1336
HpaI GTTAAC 1 cut(s) 372
HpaII CCGG 3 cut(s) 1155, 1298, 1366
HphI GGTGA 7 cut(s) 10, 17, 35, 557, 657, 1069, 1174
Hpy166II GTNNAC 7 cut(s) 51, 372, 571, 708, 733, 882, 1072
Hpy188I TCNGA 3 cut(s) 97, 163, 412
Hpy188III TCNNGA 7 cut(s) 86, 725, 1004, 1123, 1155, 1243, 1340
Hpy8I GTNNAC 7 cut(s) 51, 372, 571, 708, 733, 882, 1072
HpyAV CCTTC 1 cut(s) 1152
HpyCH4III ACNGT 6 cut(s) 200, 617, 636, 767, 913, 1076
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 6 cut(s) 302, 418, 508, 601, 902, 1022
HpyF10VI GCNNNNNNNGC 5 cut(s) 178, 238, 308, 746, 942
HpyF3I CTNAG 7 cut(s) 208, 228, 243, 264, 273, 683, 804
HpySE526I ACGT 1 cut(s) 213
Hsp92I GRCGYC 1 cut(s) 1347
Kpn2I TCCGGA 1 cut(s) 1154
KpnI GGTACC 1 cut(s) 867
KspAI GTTAAC 1 cut(s) 372
Kzo9I GATC 1 cut(s) 1273
LmnI GCTCC 3 cut(s) 516, 1027, 1426
Lsp1109I GCAGC 4 cut(s) 430, 498, 520, 1017
LweI GCATC 2 cut(s) 495, 588
MaeI CTAG 5 cut(s) 168, 756, 965, 1388, 1463
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 3 cut(s) 200, 1081, 1168
MalI GATC 1 cut(s) 1275
MbiI CCGCTC 1 cut(s) 588
MboI GATC 1 cut(s) 1273
MboII GAAGA 8 cut(s) 101, 150, 313, 712, 806, 1075, 1118, 1216
MflI RGATCY 1 cut(s) 1273
MhlI GDGCHC 2 cut(s) 840, 989
MluCI AATT 2 cut(s) 794, 1304
MlyI GAGTC 3 cut(s) 4, 419, 974
MmeI TCCRAC 2 cut(s) 196, 1301
MroI TCCGGA 1 cut(s) 1154
MseI TTAA 3 cut(s) 144, 371, 1263
MslI CAYNNNNRTG 2 cut(s) 467, 615
MspA1I CMGCKG 2 cut(s) 511, 749
MspI CCGG 3 cut(s) 1155, 1298, 1366
MspR9I CCNGG 2 cut(s) 1299, 1367
MvnI CGCG 3 cut(s) 540, 1314, 1440
MwoI GCNNNNNNNGC 5 cut(s) 178, 238, 308, 746, 942
NciI CCSGG 2 cut(s) 1299, 1367
NcoI CCATGG 2 cut(s) 63, 643
NdeII GATC 1 cut(s) 1273
NlaIV GGNNCC 2 cut(s) 865, 1419
NmuCI GTSAC 3 cut(s) 200, 1081, 1168
NspI RCATGY 2 cut(s) 466, 1230
PaeR7I CTCGAG 1 cut(s) 982
PagI TCATGA 1 cut(s) 85
PciI ACATGT 1 cut(s) 462
PfeI GAWTC 6 cut(s) 68, 92, 648, 778, 1151, 1336
PflMI CCANNNNNTGG 1 cut(s) 1193
PkrI GCNGC 5 cut(s) 420, 510, 513, 1032, 1090
PleI GAGTC 3 cut(s) 4, 419, 974
PpsI GAGTC 3 cut(s) 4, 419, 974
PscI ACATGT 1 cut(s) 462
PshBI ATTAAT 1 cut(s) 144
Psp124BI GAGCTC 1 cut(s) 989
PspN4I GGNNCC 2 cut(s) 865, 1419
PspPI GGNCC 4 cut(s) 131, 224, 1076, 1418
PspXI VCTCGAGB 1 cut(s) 982
PsuI RGATCY 1 cut(s) 1273
PvuII CAGCTG 2 cut(s) 511, 749
RsaI GTAC 6 cut(s) 281, 461, 681, 865, 1073, 1222
RsaNI GTAC 6 cut(s) 280, 460, 680, 864, 1072, 1221
RseI CAYNNNNRTG 2 cut(s) 467, 615
SacI GAGCTC 1 cut(s) 989
SaqAI TTAA 3 cut(s) 144, 371, 1263
SatI GCNGC 5 cut(s) 419, 509, 512, 1031, 1089
Sau3AI GATC 1 cut(s) 1273
Sau96I GGNCC 4 cut(s) 131, 224, 1076, 1418
SchI GAGTC 3 cut(s) 4, 419, 974
ScrFI CCNGG 2 cut(s) 1299, 1367
SduI GDGCHC 2 cut(s) 840, 989
SfaNI GCATC 2 cut(s) 495, 588
Sfr274I CTCGAG 1 cut(s) 982
SinI GGWCC 4 cut(s) 131, 224, 1076, 1418
SlaI CTCGAG 1 cut(s) 982
SmiMI CAYNNNNRTG 2 cut(s) 467, 615
SmlI CTYRAG 2 cut(s) 982, 988
SmoI CTYRAG 2 cut(s) 982, 988
Sse9I AATT 2 cut(s) 794, 1304
SsiI CCGC 6 cut(s) 134, 514, 586, 1053, 1089, 1312
SspMI CTAG 5 cut(s) 168, 756, 965, 1388, 1463
SstI GAGCTC 1 cut(s) 989
StyD4I CCNGG 2 cut(s) 1297, 1365
StyI CCWWGG 4 cut(s) 63, 496, 643, 1034
TaaI ACNGT 6 cut(s) 200, 617, 636, 767, 913, 1076
TaiI ACGT 1 cut(s) 216
TaqI TCGA 4 cut(s) 423, 651, 724, 983
TasI AATT 2 cut(s) 794, 1304
TatI WGTACW 4 cut(s) 279, 459, 679, 1220
TauI GCSGC 1 cut(s) 1091
TfiI GAWTC 6 cut(s) 68, 92, 648, 778, 1151, 1336
Tru1I TTAA 3 cut(s) 144, 371, 1263
Tru9I TTAA 3 cut(s) 144, 371, 1263
TscAI CASTG 4 cut(s) 60, 203, 641, 918
TseFI GTSAC 3 cut(s) 200, 1081, 1168
TseI GCWGC 4 cut(s) 418, 508, 511, 1030
Tsp45I GTSAC 3 cut(s) 200, 1081, 1168
TspGWI ACGGA 4 cut(s) 543, 1040, 1439, 1443
TspRI CASTG 4 cut(s) 60, 203, 641, 918
Van91I CCANNNNNTGG 1 cut(s) 1193
VpaK11BI GGWCC 4 cut(s) 131, 224, 1076, 1418
VspI ATTAAT 1 cut(s) 144
XapI RAATTY 2 cut(s) 794, 1304
XceI RCATGY 2 cut(s) 466, 1230
XcmI CCANNNNNNNNNTGG 1 cut(s) 28
XhoI CTCGAG 1 cut(s) 982
XmiI GTMKAC 1 cut(s) 881
XspI CTAG 5 cut(s) 168, 756, 965, 1388, 1463
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.