MD07G1195600.v1.1

SLT1 protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Reverse (-)
27435151 .. 27437583
2433 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1195600.v1.1.491

Sequence Viewer

Length: 1497 bp
ATGGGGGAAGCTCTTCTCACTACCCTGTCCATAGAGAATTCTCATTTGTCTACATTATTGTCTATGGATTCGGGTTCTGTGTCGCATGATGAATTGGAAAGAGAGATGAATCGAACTTTCATACTTTCTCGTCCTCCTGATATCAATCTCCCGCTACTGTCTGAGCCTAGCCCACCTCCCCAAACTTGGAATGATTCATGTGACATCTTAGATGTAGGCCTTGGATCTCAAGTTTATGAGGCCGAGGCGACAATCACTCTACCCAAAGTTGCAAGGAAATGCAACAAGAGGCTTGATAGCGTTTGGGGTGCATGGTTTTTCTTCAGCTTCTACTTCAAGCCTGTCTTGAATGAGAAGTCCAAGTGTAAGGTCATTCGGGACAGTAATGGGATCTCTGGGTACGACAAGACAGACTTGCAGTTAGATGCTTTCTTGGTTCAGCATGATATGGAGAACATGTATATGTGGGTTTTCAAGGATAGGCCTGAAAATGCATTAGGGAAGATGCAGCTGAGGAGCTTCATGAATGGGCATTCTCGCCAAGGAGAACGCCCATTCCCATTTAGTGTGGACAGGGGTTTTGTTCGGTCTCATCGTATGCAGAGGAAGCACTACAGGGGTCTTTCTAACCCGCAGTGTGTTCATGGGATAGAAGTTGTTCGGTCACCCAACCTCATGTGTCTTGATGACGAAGAGAGGAAGAGGTGGGCAGAGCTTACAGGCCGAGATATAAATTTCTCAATCCCACCTGAAGCAAGTGACTTTGGTACCTGGAGGAACCTTCAGAACACAGATTTGGAGCTTGAAAGGCCTGCCCCTCCAAAGAACAATGGAAATTCACAACCAAGAAAATTGCTTGATGGTACGGGTTTGAATTTGTCAACTCAGCCATCAGAGCATGTCAACAACGAGGGAATGGACATGTCGCCGGTCTGCAACAAGCGGAAGAAGGACCTTTTCTCCCATGGGAATGACAATGACTGTTTACCTAATAACCCACATTTCGACAGAGCTGGCACAGTCCACCCAGTTGAGTCACATTGGTTTAATGAGTTCAGTGGGGTGATGAAGAAAGCATCCGGCCCTGTTACAGCTGCAAAAACAATTTATGAGGATGAGGAAGGGTTTTTGATCATTGTCAGCTTGCCATTTGTAGATCTTCAGAGGGTAAAAGTTACTTGGAGGAATACTCCTTCACGTGGGATTGTAAAGATATCTTGCGTGAGTACAGCTTGTTTGCCATCCATTAAGAGACGTGATAGAACATTTCAGCTAACAGATCCAACACCGGAGCACTGCCCTTGTGGGGAATTTGTGAGGGAAATCGAGCTTCCTACCCGCATTCCAGAAGATGCTAAACTGGAAGCGTACTGCGATGAGACAGGTACAATGCTTGAGATTATGGTGCCCAAACGTCGAGTGGGACCAGAAGAACACGAGGTCCGTGTGTGCCTTCGCCCCTCTCCCTGGAACGAAAGAGAGCATCTTTTGACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

499

Amino Acids

56.84

Weight (kDa)

6.05

Isoelectric Point (pI)

50.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8041 PF26145 93 - 259 2.7e-103 Domain of unknown function (DUF8041)
ACL_Hsps-like PF26144 363 - 471 5.7e-58 Hsps-like alpha-crystallin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 767
AccB1I GGYRCC 2 cut(s) 767, 1405
AccI GTMKAC 1 cut(s) 50
AciI CCGC 4 cut(s) 152, 632, 943, 1339
AclWI GGATC 3 cut(s) 232, 398, 1274
AcsI RAATTY 5 cut(s) 37, 733, 835, 874, 1310
AcuI CTGAAG 4 cut(s) 307, 767, 771, 1145
AcvI CACGTG 1 cut(s) 1199
AfaI GTAC 6 cut(s) 401, 769, 865, 1228, 1370, 1387
AfiI CCNNNNNNNGG 4 cut(s) 186, 1199, 1306, 1467
AflIII ACRYGT 2 cut(s) 456, 921
AgsI TTSAA 5 cut(s) 337, 349, 475, 806, 874
AjiI CACGTC 1 cut(s) 1256
AjnI CCWGG 2 cut(s) 770, 1466
AjuI GAANNNNNNNTTGG 2 cut(s) 779, 811
AloI GAACNNNNNNTCC 4 cut(s) 540, 572, 1425, 1457
Alw21I GWGCWC 1 cut(s) 1296
Alw26I GTCTC 3 cut(s) 594, 1246, 1373
AlwI GGATC 3 cut(s) 232, 398, 1274
AoxI GGCC 6 cut(s) 217, 240, 482, 721, 809, 1081
ApeKI GCWGC 2 cut(s) 508, 1094
ApoI RAATTY 5 cut(s) 37, 733, 835, 874, 1310
ArsI GACNNNNNNTTYG 2 cut(s) 563, 595
Asp700I GAANNNNTTC 2 cut(s) 12, 657
Asp718I GGTACC 1 cut(s) 767
AspS9I GGNCC 4 cut(s) 952, 1082, 1424, 1441
AsuHPI GGTGA 2 cut(s) 657, 1075
AvaII GGWCC 3 cut(s) 952, 1424, 1441
BaeGI GKGCMC 1 cut(s) 1410
BaeI ACNNNNGTAYC 2 cut(s) 751, 784
BanI GGYRCC 2 cut(s) 767, 1405
BauI CACGAG 1 cut(s) 1436
BbrPI CACGTG 1 cut(s) 1199
Bbv12I GWGCWC 1 cut(s) 1296
BbvCI CCTCAGC 1 cut(s) 512
BbvI GCAGC 2 cut(s) 520, 1081
BccI CCATC 3 cut(s) 854, 898, 1249
BciT130I CCWGG 2 cut(s) 772, 1468
BclI TGATCA 1 cut(s) 1131
BcoDI GTCTC 3 cut(s) 594, 1246, 1373
BfaI CTAG 1 cut(s) 168
BfmI CTRYAG 1 cut(s) 613
BglII AGATCT 1 cut(s) 1156
BisI GCNGC 2 cut(s) 509, 1095
BlsI GCNGC 2 cut(s) 510, 1096
Bme1390I CCNGG 2 cut(s) 772, 1468
Bme18I GGWCC 3 cut(s) 952, 1424, 1441
BmgBI CACGTC 1 cut(s) 1256
BmgT120I GGNCC 4 cut(s) 952, 1082, 1424, 1441
BmiI GGNNCC 4 cut(s) 769, 779, 1407, 1425
BmrFI CCNGG 2 cut(s) 772, 1468
BmrI ACTGGG 1 cut(s) 1022
BmsI GCATC 5 cut(s) 415, 495, 1085, 1342, 1492
BmuI ACTGGG 1 cut(s) 1022
BplI GAGNNNNNCTC 2 cut(s) 1174, 1206
BpmI CTGGAG 1 cut(s) 793
Bpu10I CCTNAGC 1 cut(s) 512
BpuEI CTTGAG 2 cut(s) 213, 1415
BsaAI YACGTR 1 cut(s) 1199
BsaBI GATNNNNATC 1 cut(s) 144
BsaI GGTCTC 1 cut(s) 594
BsaJI CCNNGG 5 cut(s) 220, 243, 541, 964, 1466
BsaWI WCCGGW 1 cut(s) 1288
BsaXI ACNNNNNCTCC 4 cut(s) 443, 473, 944, 974
Bsc4I CCNNNNNNNGG 4 cut(s) 186, 1199, 1306, 1467
Bse118I RCCGGY 1 cut(s) 928
Bse1I ACTGG 2 cut(s) 1028, 1365
Bse8I GATNNNNATC 1 cut(s) 144
BseBI CCWGG 2 cut(s) 772, 1468
BseDI CCNNGG 5 cut(s) 220, 243, 541, 964, 1466
BseGI GGATG 3 cut(s) 1076, 1120, 1241
BseJI GATNNNNATC 1 cut(s) 144
BseLI CCNNNNNNNGG 4 cut(s) 186, 1199, 1306, 1467
BseMII CTCAG 3 cut(s) 153, 503, 899
BseNI ACTGG 2 cut(s) 1028, 1365
BseRI GAGGAG 1 cut(s) 529
BseSI GKGCMC 1 cut(s) 1410
BseXI GCAGC 2 cut(s) 520, 1081
BshFI GGCC 6 cut(s) 219, 242, 484, 723, 811, 1083
BshNI GGYRCC 2 cut(s) 767, 1405
BsiHKAI GWGCWC 1 cut(s) 1296
BsiSI CCGG 3 cut(s) 929, 1080, 1289
BslFI GGGAC 2 cut(s) 392, 1437
BslI CCNNNNNNNGG 4 cut(s) 186, 1199, 1306, 1467
BsmAI GTCTC 3 cut(s) 594, 1246, 1373
BsmBI CGTCTC 1 cut(s) 1246
BsmFI GGGAC 2 cut(s) 392, 1437
BsmI GAATGC 2 cut(s) 532, 1341
BsnI GGCC 6 cut(s) 219, 242, 484, 723, 811, 1083
Bso31I GGTCTC 1 cut(s) 594
Bsp1286I GDGCHC 2 cut(s) 1296, 1410
Bsp143I GATC 5 cut(s) 224, 390, 1131, 1156, 1279
Bsp19I CCATGG 1 cut(s) 964
BspACI CCGC 4 cut(s) 152, 632, 943, 1339
BspANI GGCC 6 cut(s) 219, 242, 484, 723, 811, 1083
BspCNI CTCAG 3 cut(s) 154, 504, 898
BspHI TCATGA 1 cut(s) 522
BspLI GGNNCC 4 cut(s) 769, 779, 1407, 1425
BspPI GGATC 3 cut(s) 232, 398, 1274
BspQI GCTCTTC 1 cut(s) 18
BspT107I GGYRCC 2 cut(s) 767, 1405
BspTNI GGTCTC 1 cut(s) 594
BsrFI RCCGGY 1 cut(s) 928
BsrI ACTGG 2 cut(s) 1028, 1365
BssAI RCCGGY 1 cut(s) 928
BssECI CCNNGG 5 cut(s) 220, 243, 541, 964, 1466
BssMI GATC 5 cut(s) 224, 390, 1131, 1156, 1279
BssSI CACGAG 1 cut(s) 1436
BssT1I CCWWGG 3 cut(s) 220, 541, 964
Bst2BI CACGAG 1 cut(s) 1436
Bst2UI CCWGG 2 cut(s) 772, 1468
Bst4CI ACNGT 4 cut(s) 159, 383, 983, 1021
Bst6I CTCTTC 3 cut(s) 18, 687, 695
BstBAI YACGTR 1 cut(s) 1199
BstC8I GCNNGC 3 cut(s) 813, 1015, 1145
BstDEI CTNAG 4 cut(s) 162, 208, 512, 885
BstDSI CCRYGG 1 cut(s) 964
BstEII GGTNACC 1 cut(s) 663
BstF5I GGATG 3 cut(s) 1076, 1120, 1241
BstKTI GATC 5 cut(s) 227, 393, 1134, 1159, 1282
BstMAI GTCTC 3 cut(s) 594, 1246, 1373
BstMBI GATC 5 cut(s) 224, 390, 1131, 1156, 1279
BstMWI GCNNNNNNNGC 3 cut(s) 607, 808, 895
BstNI CCWGG 2 cut(s) 772, 1468
BstNSI RCATGY 3 cut(s) 460, 902, 925
BstPI GGTNACC 1 cut(s) 663
BstSCI CCNGG 2 cut(s) 770, 1466
BstSFI CTRYAG 1 cut(s) 613
BstSLI GKGCMC 1 cut(s) 1410
BstV1I GCAGC 2 cut(s) 520, 1081
BstX2I RGATCY 4 cut(s) 224, 390, 1156, 1279
BstYI RGATCY 4 cut(s) 224, 390, 1156, 1279
BsuRI GGCC 6 cut(s) 219, 242, 484, 723, 811, 1083
BtgI CCRYGG 1 cut(s) 964
BtgZI GCGATG 1 cut(s) 1389
BtrI CACGTC 1 cut(s) 1256
BtsCI GGATG 3 cut(s) 1076, 1120, 1241
BtsI GCAGTG 2 cut(s) 641, 1294
BtsIMutI CAGTG 3 cut(s) 641, 1063, 1294
Cac8I GCNNGC 3 cut(s) 813, 1015, 1145
CciI TCATGA 1 cut(s) 522
Cfr10I RCCGGY 1 cut(s) 928
Cfr13I GGNCC 4 cut(s) 952, 1082, 1424, 1441
Csp6I GTAC 6 cut(s) 400, 768, 864, 1227, 1369, 1386
CviQI GTAC 6 cut(s) 400, 768, 864, 1227, 1369, 1386
DdeI CTNAG 4 cut(s) 162, 208, 512, 885
DpnI GATC 5 cut(s) 226, 392, 1133, 1158, 1281
DpnII GATC 5 cut(s) 224, 390, 1131, 1156, 1279
Eam1104I CTCTTC 3 cut(s) 18, 687, 695
EarI CTCTTC 3 cut(s) 18, 687, 695
Eco130I CCWWGG 3 cut(s) 220, 541, 964
Eco147I AGGCCT 3 cut(s) 219, 484, 811
Eco31I GGTCTC 1 cut(s) 594
Eco32I GATATC 2 cut(s) 142, 1215
Eco47I GGWCC 3 cut(s) 952, 1424, 1441
Eco57I CTGAAG 4 cut(s) 307, 767, 771, 1145
Eco72I CACGTG 1 cut(s) 1199
Eco91I GGTNACC 1 cut(s) 663
EcoO109I RGGNCCY 1 cut(s) 952
EcoO65I GGTNACC 1 cut(s) 663
EcoRI GAATTC 1 cut(s) 37
EcoRII CCWGG 2 cut(s) 770, 1466
EcoRV GATATC 2 cut(s) 142, 1215
EcoT14I CCWWGG 3 cut(s) 220, 541, 964
EcoT22I ATGCAT 1 cut(s) 496
ErhI CCWWGG 3 cut(s) 220, 541, 964
Esp3I CGTCTC 1 cut(s) 1246
FalI AAGNNNNNCTT 4 cut(s) 329, 361, 398, 430
FaqI GGGAC 2 cut(s) 392, 1437
FauI CCCGC 3 cut(s) 159, 639, 1346
FbaI TGATCA 1 cut(s) 1131
FblI GTMKAC 1 cut(s) 50
Fnu4HI GCNGC 2 cut(s) 509, 1095
FokI GGATG 3 cut(s) 1063, 1127, 1228
Fsp4HI GCNGC 2 cut(s) 509, 1095
FspBI CTAG 1 cut(s) 168
GluI GCNGC 2 cut(s) 509, 1095
GsuI CTGGAG 1 cut(s) 793
HaeIII GGCC 6 cut(s) 219, 242, 484, 723, 811, 1083
HapII CCGG 3 cut(s) 929, 1080, 1289
HincII GTYRAC 2 cut(s) 882, 904
HindII GTYRAC 2 cut(s) 882, 904
HinfI GANTC 4 cut(s) 68, 109, 194, 1034
HpaII CCGG 3 cut(s) 929, 1080, 1289
HphI GGTGA 2 cut(s) 657, 1075
Hpy166II GTNNAC 6 cut(s) 51, 571, 882, 904, 986, 1024
Hpy188I TCNGA 4 cut(s) 163, 786, 895, 1164
Hpy188III TCNNGA 6 cut(s) 137, 346, 377, 523, 683, 1346
Hpy8I GTNNAC 6 cut(s) 51, 571, 882, 904, 986, 1024
Hpy99I CGWCG 1 cut(s) 1419
HpyAV CCTTC 5 cut(s) 791, 943, 1115, 1203, 1463
HpyCH4III ACNGT 4 cut(s) 159, 383, 983, 1021
HpyCH4IV ACGT 3 cut(s) 1198, 1255, 1414
HpyCH4V TGCA 9 cut(s) 272, 282, 311, 418, 494, 508, 601, 936, 1097
HpyF10VI GCNNNNNNNGC 3 cut(s) 607, 808, 895
HpyF3I CTNAG 4 cut(s) 162, 208, 512, 885
HpySE526I ACGT 3 cut(s) 1198, 1255, 1414
KpnI GGTACC 1 cut(s) 771
Ksp22I TGATCA 1 cut(s) 1131
Kzo9I GATC 5 cut(s) 224, 390, 1131, 1156, 1279
LguI GCTCTTC 1 cut(s) 18
LmnI GCTCC 3 cut(s) 516, 799, 1291
Lsp1109I GCAGC 2 cut(s) 520, 1081
LweI GCATC 5 cut(s) 415, 495, 1085, 1342, 1492
MaeI CTAG 1 cut(s) 168
MaeII ACGT 3 cut(s) 1198, 1255, 1414
MaeIII GTNAC 6 cut(s) 200, 663, 758, 1035, 1087, 1174
MalI GATC 5 cut(s) 226, 392, 1133, 1158, 1281
MboI GATC 5 cut(s) 224, 390, 1131, 1156, 1279
MflI RGATCY 4 cut(s) 224, 390, 1156, 1279
MhlI GDGCHC 2 cut(s) 1296, 1410
MluCI AATT 8 cut(s) 37, 92, 733, 835, 851, 874, 1104, 1310
MlyI GAGTC 1 cut(s) 1043
MmeI TCCRAC 1 cut(s) 1307
Mph1103I ATGCAT 1 cut(s) 496
MroXI GAANNNNTTC 2 cut(s) 12, 657
MseI TTAA 2 cut(s) 1047, 1248
MslI CAYNNNNRTG 2 cut(s) 461, 969
MspA1I CMGCKG 2 cut(s) 511, 1094
MspI CCGG 3 cut(s) 929, 1080, 1289
MspR9I CCNGG 2 cut(s) 772, 1468
Mva1269I GAATGC 2 cut(s) 532, 1341
MvaI CCWGG 2 cut(s) 772, 1468
MwoI GCNNNNNNNGC 3 cut(s) 607, 808, 895
NcoI CCATGG 1 cut(s) 964
NdeII GATC 5 cut(s) 224, 390, 1131, 1156, 1279
NlaIV GGNNCC 4 cut(s) 769, 779, 1407, 1425
NmeAIII GCCGAG 2 cut(s) 268, 749
NmuCI GTSAC 4 cut(s) 200, 663, 758, 1035
NsiI ATGCAT 1 cut(s) 496
NspI RCATGY 3 cut(s) 460, 902, 925
PagI TCATGA 1 cut(s) 522
PceI AGGCCT 3 cut(s) 219, 484, 811
PciI ACATGT 2 cut(s) 456, 921
PciSI GCTCTTC 1 cut(s) 18
PcsI WCGNNNNNNNCGW 1 cut(s) 592
PctI GAATGC 2 cut(s) 532, 1341
PdmI GAANNNNTTC 2 cut(s) 12, 657
PfeI GAWTC 3 cut(s) 68, 109, 194
PkrI GCNGC 2 cut(s) 510, 1096
PleI GAGTC 1 cut(s) 1042
PmaCI CACGTG 1 cut(s) 1199
PmlI CACGTG 1 cut(s) 1199
PpsI GAGTC 1 cut(s) 1042
Ppu21I YACGTR 1 cut(s) 1199
PpuMI RGGWCCY 1 cut(s) 952
PscI ACATGT 2 cut(s) 456, 921
Psp5II RGGWCCY 1 cut(s) 952
Psp6I CCWGG 2 cut(s) 770, 1466
PspCI CACGTG 1 cut(s) 1199
PspEI GGTNACC 1 cut(s) 663
PspGI CCWGG 2 cut(s) 770, 1466
PspN4I GGNNCC 4 cut(s) 769, 779, 1407, 1425
PspPI GGNCC 4 cut(s) 952, 1082, 1424, 1441
PspPPI RGGWCCY 1 cut(s) 952
PsuI RGATCY 4 cut(s) 224, 390, 1156, 1279
PvuII CAGCTG 2 cut(s) 511, 1094
RsaI GTAC 6 cut(s) 401, 769, 865, 1228, 1370, 1387
RsaNI GTAC 6 cut(s) 400, 768, 864, 1227, 1369, 1386
RseI CAYNNNNRTG 2 cut(s) 461, 969
SapI GCTCTTC 1 cut(s) 18
SaqAI TTAA 2 cut(s) 1047, 1248
SatI GCNGC 2 cut(s) 509, 1095
Sau3AI GATC 5 cut(s) 224, 390, 1131, 1156, 1279
Sau96I GGNCC 4 cut(s) 952, 1082, 1424, 1441
SchI GAGTC 1 cut(s) 1043
ScrFI CCNGG 2 cut(s) 772, 1468
SduI GDGCHC 2 cut(s) 1296, 1410
SfaNI GCATC 5 cut(s) 415, 495, 1085, 1342, 1492
SfcI CTRYAG 1 cut(s) 613
SinI GGWCC 3 cut(s) 952, 1424, 1441
SmiMI CAYNNNNRTG 2 cut(s) 461, 969
SmlI CTYRAG 2 cut(s) 228, 1394
SmoI CTYRAG 2 cut(s) 228, 1394
Sse9I AATT 8 cut(s) 37, 92, 733, 835, 851, 874, 1104, 1310
SseBI AGGCCT 3 cut(s) 219, 484, 811
SsiI CCGC 4 cut(s) 152, 632, 943, 1339
SspMI CTAG 1 cut(s) 168
StuI AGGCCT 3 cut(s) 219, 484, 811
StyD4I CCNGG 2 cut(s) 770, 1466
StyI CCWWGG 3 cut(s) 220, 541, 964
TaaI ACNGT 4 cut(s) 159, 383, 983, 1021
TaiI ACGT 3 cut(s) 1201, 1258, 1417
TaqI TCGA 4 cut(s) 112, 1005, 1326, 1417
TaqII GACCGA 2 cut(s) 576, 651
TasI AATT 8 cut(s) 37, 92, 733, 835, 851, 874, 1104, 1310
TatI WGTACW 1 cut(s) 1226
TfiI GAWTC 3 cut(s) 68, 109, 194
Tru1I TTAA 2 cut(s) 1047, 1248
Tru9I TTAA 2 cut(s) 1047, 1248
TscAI CASTG 3 cut(s) 641, 1063, 1301
TseFI GTSAC 4 cut(s) 200, 663, 758, 1035
TseI GCWGC 2 cut(s) 508, 1094
Tsp45I GTSAC 4 cut(s) 200, 663, 758, 1035
TspDTI ATGAA 8 cut(s) 105, 109, 122, 186, 511, 539, 632, 1082
TspGWI ACGGA 1 cut(s) 1433
TspRI CASTG 3 cut(s) 641, 1063, 1301
VpaK11BI GGWCC 3 cut(s) 952, 1424, 1441
XapI RAATTY 5 cut(s) 37, 733, 835, 874, 1310
XceI RCATGY 3 cut(s) 460, 902, 925
XcmI CCANNNNNNNNNTGG 1 cut(s) 1417
XmiI GTMKAC 1 cut(s) 50
XmnI GAANNNNTTC 2 cut(s) 12, 657
XspI CTAG 1 cut(s) 168
Zsp2I ATGCAT 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.