Rorug01G0330200

SLT1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0007681
Physical Location & Seq
Forward (+)
44883818 .. 44886815
2998 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0330200.1

Sequence Viewer

Length: 867 bp
ATGTCCAATCAAGTGCGTTACAAGGAAACAAACGGTGGTTTTACGGTCATTTCACACAGAGAACACGAAAGCATTGCTGCAGCGGATTATTGCCCAAGAGTTAGTTTCTGTAACGAACTTGACCCGTACTTCGTCTTTCCCCAGTTCGTCGCCGGAAAAGGCTCAATCTTTACATCCACGAATGGTAACATAAGGCGGAGGATTGTGATTGAAAAATTCAAAGATTTTTGGATTGCTGGAGGGTCTCATATTGCTATTATCTGCATTGTCTCAGCATTCATTCAAATATCCAGAGGGGCCAAGGAGGACCCTAGCTACAAGTCTGGAAGTGACCACCGTCGTCCATGGCTGACTCTTCTCATAGTCCTCCTTGCCTGTGGAGCTCATACTGATACAAGTATCAGACCTGCATCTGTGGACCAACCGGCTTCATGGCTCTCTGCTTTCTACGACAGACCATCAATTTTTTGCAGGAAGTGTTTAGTGCTAATGGACTTATTGCGCAGCGACCAAGTCTTATCAAAAGATGTGCACTCTGTCTCACGAAGGCCAAGCACGGTTCAACATGAGGATATTGATTTTAGTTCAGACAGGAGTTTAGCTGAATGCGATACAAAAACTATTACTGCTGGCAAGATGGAGTTTGAGGCAGAAATTGCCTATTCTGCCATGTCAGAACTGGACCTACCTGTTCCAGCTCAAGGATCAATGCTGGTGTGGATTTTGGTCCAATGGACCATAATTGTCCAGTCATCCAAGTTACCATTTCCGCTATCAAAAGCAGAATTTGATCGTCTCATTGGTGATTGGTGCCAGACGAGTTACAAGGTGCATACTCAGCAGCAAGCTAATGGCCGCCTACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

288

Amino Acids

32.39

Weight (kDa)

7.07

Isoelectric Point (pI)

49.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 503
Acc36I ACCTGC 1 cut(s) 415
AccB1I GGYRCC 1 cut(s) 810
AciI CCGC 4 cut(s) 83, 196, 770, 856
AclWI GGATC 1 cut(s) 712
AcoI YGGCCR 1 cut(s) 853
AcsI RAATTY 2 cut(s) 215, 785
AfaI GTAC 1 cut(s) 128
AfiI CCNNNNNNNGG 1 cut(s) 701
AgsI TTSAA 4 cut(s) 212, 220, 284, 563
AluBI AGCT 5 cut(s) 315, 383, 602, 698, 848
AluI AGCT 5 cut(s) 315, 383, 602, 698, 848
Alw21I GWGCWC 2 cut(s) 385, 534
Alw26I GTCTC 4 cut(s) 249, 274, 544, 800
Alw44I GTGCAC 1 cut(s) 530
AlwI GGATC 1 cut(s) 712
AoxI GGCC 3 cut(s) 297, 548, 853
ApaLI GTGCAC 1 cut(s) 530
ApeKI GCWGC 4 cut(s) 77, 80, 504, 841
ApoI RAATTY 2 cut(s) 215, 785
ArsI GACNNNNNNTTYG 2 cut(s) 113, 145
AspLEI GCGC 1 cut(s) 504
AspS9I GGNCC 6 cut(s) 297, 307, 418, 682, 727, 735
AsuHPI GGTGA 1 cut(s) 815
AvaII GGWCC 5 cut(s) 307, 418, 682, 727, 735
BaeGI GKGCMC 1 cut(s) 534
BanI GGYRCC 1 cut(s) 810
BanII GRGCYC 1 cut(s) 385
Bbv12I GWGCWC 2 cut(s) 385, 534
BbvI GCAGC 4 cut(s) 64, 92, 516, 853
BccI CCATC 2 cut(s) 466, 631
BcgI CGANNNNNNTGC 2 cut(s) 56, 90
BcoDI GTCTC 4 cut(s) 249, 274, 544, 800
BfaI CTAG 1 cut(s) 312
BfmI CTRYAG 1 cut(s) 78
BfuAI ACCTGC 1 cut(s) 415
BisI GCNGC 5 cut(s) 78, 81, 505, 842, 856
BlsI GCNGC 5 cut(s) 79, 82, 506, 843, 857
Bme18I GGWCC 5 cut(s) 307, 418, 682, 727, 735
BmgT120I GGNCC 6 cut(s) 297, 307, 418, 682, 727, 735
BmiI GGNNCC 3 cut(s) 298, 309, 812
BmrI ACTGGG 1 cut(s) 136
BmsI GCATC 1 cut(s) 419
BmuI ACTGGG 1 cut(s) 136
BoxI GACNNNNGTC 1 cut(s) 336
BpmI CTGGAG 1 cut(s) 258
BpuEI CTTGAG 1 cut(s) 684
BsaI GGTCTC 1 cut(s) 249
BsaJI CCNNGG 2 cut(s) 300, 344
Bsc4I CCNNNNNNNGG 1 cut(s) 701
Bse118I RCCGGY 1 cut(s) 424
Bse1I ACTGG 3 cut(s) 142, 684, 748
Bse3DI GCAATG 1 cut(s) 72
BseDI CCNNGG 2 cut(s) 300, 344
BseGI GGATG 2 cut(s) 173, 752
BseLI CCNNNNNNNGG 1 cut(s) 701
BseMI GCAATG 1 cut(s) 72
BseMII CTCAG 2 cut(s) 285, 851
BseNI ACTGG 3 cut(s) 142, 684, 748
BseSI GKGCMC 1 cut(s) 534
BseXI GCAGC 4 cut(s) 64, 92, 516, 853
BshFI GGCC 3 cut(s) 299, 550, 855
BshNI GGYRCC 1 cut(s) 810
BsiHKAI GWGCWC 2 cut(s) 385, 534
BsiSI CCGG 2 cut(s) 153, 425
BslI CCNNNNNNNGG 1 cut(s) 701
BsmAI GTCTC 4 cut(s) 249, 274, 544, 800
BsmBI CGTCTC 1 cut(s) 800
BsmI GAATGC 2 cut(s) 275, 611
BsnI GGCC 3 cut(s) 299, 550, 855
Bso31I GGTCTC 1 cut(s) 249
Bsp1286I GDGCHC 2 cut(s) 385, 534
Bsp143I GATC 2 cut(s) 704, 790
Bsp19I CCATGG 1 cut(s) 344
BspACI CCGC 4 cut(s) 83, 196, 770, 856
BspANI GGCC 3 cut(s) 299, 550, 855
BspCNI CTCAG 2 cut(s) 284, 850
BspLI GGNNCC 3 cut(s) 298, 309, 812
BspMAI CTGCAG 1 cut(s) 82
BspMI ACCTGC 1 cut(s) 415
BspPI GGATC 1 cut(s) 712
BspT107I GGYRCC 1 cut(s) 810
BspTNI GGTCTC 1 cut(s) 249
BsrDI GCAATG 1 cut(s) 72
BsrFI RCCGGY 1 cut(s) 424
BsrI ACTGG 3 cut(s) 142, 684, 748
BssAI RCCGGY 1 cut(s) 424
BssECI CCNNGG 2 cut(s) 300, 344
BssMI GATC 2 cut(s) 704, 790
BssT1I CCWWGG 2 cut(s) 300, 344
Bst4CI ACNGT 4 cut(s) 35, 46, 338, 559
Bst6I CTCTTC 1 cut(s) 360
BstAPI GCANNNNNTGC 1 cut(s) 656
BstC8I GCNNGC 2 cut(s) 631, 846
BstDEI CTNAG 2 cut(s) 271, 837
BstDSI CCRYGG 1 cut(s) 344
BstF5I GGATG 2 cut(s) 173, 752
BstHHI GCGC 1 cut(s) 504
BstKTI GATC 2 cut(s) 707, 793
BstMAI GTCTC 4 cut(s) 249, 274, 544, 800
BstMBI GATC 2 cut(s) 704, 790
BstMWI GCNNNNNNNGC 4 cut(s) 380, 656, 665, 838
BstPAI GACNNNNGTC 1 cut(s) 336
BstSFI CTRYAG 1 cut(s) 78
BstSLI GKGCMC 1 cut(s) 534
BstV1I GCAGC 4 cut(s) 64, 92, 516, 853
BsuRI GGCC 3 cut(s) 299, 550, 855
BtgI CCRYGG 1 cut(s) 344
BtsCI GGATG 2 cut(s) 173, 752
BveI ACCTGC 1 cut(s) 415
Cac8I GCNNGC 2 cut(s) 631, 846
CfoI GCGC 1 cut(s) 504
Cfr10I RCCGGY 1 cut(s) 424
Cfr13I GGNCC 6 cut(s) 297, 307, 418, 682, 727, 735
Csp6I GTAC 1 cut(s) 127
CviAII CATG 4 cut(s) 345, 432, 566, 670
CviQI GTAC 1 cut(s) 127
DdeI CTNAG 2 cut(s) 271, 837
DpnI GATC 2 cut(s) 706, 792
DpnII GATC 2 cut(s) 704, 790
EaeI YGGCCR 1 cut(s) 853
Eam1104I CTCTTC 1 cut(s) 360
EarI CTCTTC 1 cut(s) 360
EciI GGCGGA 1 cut(s) 211
Ecl136II GAGCTC 1 cut(s) 383
Eco130I CCWWGG 2 cut(s) 300, 344
Eco24I GRGCYC 1 cut(s) 385
Eco31I GGTCTC 1 cut(s) 249
Eco47I GGWCC 5 cut(s) 307, 418, 682, 727, 735
Eco53kI GAGCTC 1 cut(s) 383
EcoICRI GAGCTC 1 cut(s) 383
EcoO109I RGGNCCY 1 cut(s) 307
EcoT14I CCWWGG 2 cut(s) 300, 344
EcoT38I GRGCYC 1 cut(s) 385
ErhI CCWWGG 2 cut(s) 300, 344
Esp3I CGTCTC 1 cut(s) 800
FaeI CATG 4 cut(s) 348, 435, 569, 673
FatI CATG 4 cut(s) 344, 431, 565, 669
Fnu4HI GCNGC 5 cut(s) 78, 81, 505, 842, 856
FokI GGATG 2 cut(s) 160, 739
FriOI GRGCYC 1 cut(s) 385
Fsp4HI GCNGC 5 cut(s) 78, 81, 505, 842, 856
FspBI CTAG 1 cut(s) 312
FspI TGCGCA 1 cut(s) 503
GlaI GCGC 1 cut(s) 503
GluI GCNGC 5 cut(s) 78, 81, 505, 842, 856
GsuI CTGGAG 1 cut(s) 258
HaeIII GGCC 3 cut(s) 299, 550, 855
HapII CCGG 2 cut(s) 153, 425
HhaI GCGC 1 cut(s) 504
Hin1II CATG 4 cut(s) 348, 435, 569, 673
Hin6I GCGC 1 cut(s) 502
HinP1I GCGC 1 cut(s) 502
HinfI GANTC 1 cut(s) 352
HpaII CCGG 2 cut(s) 153, 425
HphI GGTGA 1 cut(s) 815
Hpy166II GTNNAC 2 cut(s) 418, 532
Hpy188I TCNGA 3 cut(s) 404, 589, 676
Hpy188III TCNNGA 3 cut(s) 291, 324, 543
Hpy8I GTNNAC 2 cut(s) 418, 532
Hpy99I CGWCG 2 cut(s) 152, 342
HpyAV CCTTC 1 cut(s) 540
HpyCH4III ACNGT 4 cut(s) 35, 46, 338, 559
HpyCH4V TGCA 6 cut(s) 80, 264, 410, 471, 532, 832
HpyF10VI GCNNNNNNNGC 4 cut(s) 380, 656, 665, 838
HpyF3I CTNAG 2 cut(s) 271, 837
Hsp92II CATG 4 cut(s) 348, 435, 569, 673
HspAI GCGC 1 cut(s) 502
Kzo9I GATC 2 cut(s) 704, 790
LmnI GCTCC 1 cut(s) 380
Lsp1109I GCAGC 4 cut(s) 64, 92, 516, 853
LweI GCATC 1 cut(s) 419
MaeI CTAG 1 cut(s) 312
MaeIII GTNAC 6 cut(s) 17, 110, 185, 329, 759, 821
MalI GATC 2 cut(s) 706, 792
MboI GATC 2 cut(s) 704, 790
MboII GAAGA 1 cut(s) 347
MhlI GDGCHC 2 cut(s) 385, 534
MluCI AATT 5 cut(s) 215, 462, 654, 741, 785
MlyI GAGTC 1 cut(s) 346
MnlI CCTC 7 cut(s) 192, 233, 287, 298, 377, 562, 640
MspA1I CMGCKG 1 cut(s) 83
MspI CCGG 2 cut(s) 153, 425
Mva1269I GAATGC 2 cut(s) 275, 611
MwoI GCNNNNNNNGC 4 cut(s) 380, 656, 665, 838
NcoI CCATGG 1 cut(s) 344
NdeII GATC 2 cut(s) 704, 790
NlaIII CATG 4 cut(s) 348, 435, 569, 673
NlaIV GGNNCC 3 cut(s) 298, 309, 812
NmuCI GTSAC 1 cut(s) 329
NsbI TGCGCA 1 cut(s) 503
PctI GAATGC 2 cut(s) 275, 611
PflFI GACNNNGTC 1 cut(s) 512
PkrI GCNGC 5 cut(s) 79, 82, 506, 843, 857
PleI GAGTC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 346
PpuMI RGGWCCY 1 cut(s) 307
PshAI GACNNNNGTC 1 cut(s) 336
Psp124BI GAGCTC 1 cut(s) 385
Psp5II RGGWCCY 1 cut(s) 307
PspN4I GGNNCC 3 cut(s) 298, 309, 812
PspPI GGNCC 6 cut(s) 297, 307, 418, 682, 727, 735
PspPPI RGGWCCY 1 cut(s) 307
PsrI GAACNNNNNNTAC 2 cut(s) 669, 701
PstI CTGCAG 1 cut(s) 82
PsyI GACNNNGTC 1 cut(s) 512
RsaI GTAC 1 cut(s) 128
RsaNI GTAC 1 cut(s) 127
SacI GAGCTC 1 cut(s) 385
SatI GCNGC 5 cut(s) 78, 81, 505, 842, 856
Sau3AI GATC 2 cut(s) 704, 790
Sau96I GGNCC 6 cut(s) 297, 307, 418, 682, 727, 735
SchI GAGTC 1 cut(s) 346
SduI GDGCHC 2 cut(s) 385, 534
SetI ASST 9 cut(s) 317, 385, 409, 604, 687, 691, 700, 831, 850
SfaNI GCATC 1 cut(s) 419
SfcI CTRYAG 1 cut(s) 78
SinI GGWCC 5 cut(s) 307, 418, 682, 727, 735
SmlI CTYRAG 1 cut(s) 699
SmoI CTYRAG 1 cut(s) 699
Sse9I AATT 5 cut(s) 215, 462, 654, 741, 785
SsiI CCGC 4 cut(s) 83, 196, 770, 856
SspMI CTAG 1 cut(s) 312
SstI GAGCTC 1 cut(s) 385
StyI CCWWGG 2 cut(s) 300, 344
TaaI ACNGT 4 cut(s) 35, 46, 338, 559
TasI AATT 5 cut(s) 215, 462, 654, 741, 785
TauI GCSGC 1 cut(s) 858
TseFI GTSAC 1 cut(s) 329
TseI GCWGC 4 cut(s) 77, 80, 504, 841
Tsp45I GTSAC 1 cut(s) 329
TspDTI ATGAA 2 cut(s) 268, 420
Tth111I GACNNNGTC 1 cut(s) 512
VneI GTGCAC 1 cut(s) 530
VpaK11BI GGWCC 5 cut(s) 307, 418, 682, 727, 735
XapI RAATTY 2 cut(s) 215, 785
XcmI CCANNNNNNNNNTGG 1 cut(s) 676
XspI CTAG 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.