Rh1DG331500

SLT1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0007681
Physical Location & Seq
Reverse (-)
55627349 .. 55630560
3212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG331500.1

Sequence Viewer

Length: 1509 bp
ATGGGGGAAGCTCTTCTCACTACTTTGTCCATAGAGAATTCTCATTTGTCTACGTTGTTGTCGATGGATTCTGGTTCTTTGGCACATGATGAATTGGAGAGAGAGATGAATCGGACTTTCATACTTTCGCGCCCTCCTGATATCAATCTCCCGTTGCTGTCTGAACCAAGCCCACCTCCTCCAACTTGGAATGATCCATGTGACATCTTGGATGTAGGCCTTGGGTCTCAAGTGTATGAAGCTGAGACAACAATCAGTCTCCCCAAAGTCGCAAGGAAATGCAACAAGAGACTCGATAGTGTTTGGGGTGCATGGTTTTTCTTTAGCTTCTATTTCAAGCCTGTTTTGAACGAGAAGTCTAAGTGCAAGATCATTCGGGACAGTAATGGGGTGTCTGGGTTTGACAAAACAGACTTGCAGCTAGATGCTTTCTTGGTTCAGCATGATATGGAAAACATGTACATGTGGGTTTTCAAGGAAAGGCCCGAAAATGCATTGGGGAAGATGCAGCTGAGGAGTTACATGAATGGGCATTCTCGCCAAGGAGAGCGGCCCTTCCCATTTAGTGTGGACAGAGGTTTTGTGCGGTCTCATCGAATGCAGAGGAAGCACTACAGGGGTCTCTCTAACCCTCAATGTGTTCATGGGATTGAAATTGTTAGGACACCCAACCTCTTGTGTCTTGATGAGGAAGAGAGGAAGAGGTGGACAGAGCTTACAGGCCGAGATGTAAACTTCTCAATCCCGCTTGAAGCAAGTGATTTTGGTTCTTGGAGGAACATACAGAATCCAGAACTTGAGCTTGACCGGCCTGCCCCTCCATCAAAGAACAATATAAATTCTCATCAAAGAAAATTGCTTGATGGTACTGGTTTGAATTTGTCAACTCAGCCATCAGACCATGGAAACAGTGATGGAATGGACCTGTCACCGGTCTGCCATAAGCGAAAGAAAGAACTCTTTCCTCATGGAAATGACAATGATTGCTGTTTACCCAATAACCACCATTTTGACAGAGTTCTGGATGGCAAAATCCACACAGATGAGTCATCTTGGTTTAATGAGTTTAGTGGGGCAATGAAGAATGCATCTGGGCCGGTTACAGCTGCAAAGACAATATACGAGGACGATGAAGGGTTTTTGGTCATTGTCAGCTTACCTTTTGTAGATCTTCAAAGGGTTAAAGTTACTTGGAGGAATACTAATTCACATGGGATTGTAAAGATATCTTGTGTGAGTACAGCTTGTATGCCATTCATTAAGAGGCGTGATAGAACATTTAAGCTAACAGATCTGGCACCAGAGCACTGTCCTCCTGGGGAATTTGTCAGGGAAATTACTCTTCCAACTCGCATTCCAGAAGATGCCAAACTGGAAGCGTATTGTGATGAGACAGGAACAATGCTCGAAGTTATGGTGCCCAAACGTCGAGTAGGACCAGAAGAACACGAGGTCCGTGTGTGCCTCCGCCCCTCTCCCTGGAACGAAAGGGAGCATTTGTTGACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

502

Amino Acids

57.35

Weight (kDa)

6.08

Isoelectric Point (pI)

48.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8041 PF26145 93 - 259 2e-103 Domain of unknown function (DUF8041)
ACL_Hsps-like PF26144 367 - 475 3e-59 Hsps-like alpha-crystallin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1297, 1417
AccBSI CCGCTC 1 cut(s) 550
AccI GTMKAC 1 cut(s) 50
AccII CGCG 1 cut(s) 130
AciI CCGC 4 cut(s) 550, 586, 746, 1468
AclWI GGATC 1 cut(s) 188
AcsI RAATTY 4 cut(s) 37, 838, 877, 1322
AfaI GTAC 3 cut(s) 461, 868, 1240
AfiI CCNNNNNNNGG 2 cut(s) 931, 1479
AflIII ACRYGT 2 cut(s) 456, 462
AgeI ACCGGT 1 cut(s) 931
AgsI TTSAA 7 cut(s) 337, 349, 475, 653, 752, 877, 1175
AjnI CCWGG 2 cut(s) 1315, 1478
AloI GAACNNNNNNTCC 2 cut(s) 1437, 1469
Alw21I GWGCWC 1 cut(s) 1308
Alw26I GTCTC 7 cut(s) 231, 239, 263, 283, 594, 626, 1385
AlwI GGATC 1 cut(s) 188
AoxI GGCC 6 cut(s) 217, 482, 551, 721, 809, 1094
ApeKI GCWGC 3 cut(s) 418, 508, 1106
ApoI RAATTY 4 cut(s) 37, 838, 877, 1322
ArsI GACNNNNNNTTYG 2 cut(s) 563, 595
AsiGI ACCGGT 1 cut(s) 931
Asp700I GAANNNNTTC 2 cut(s) 12, 960
AspLEI GCGC 1 cut(s) 132
AspS9I GGNCC 6 cut(s) 483, 552, 922, 1094, 1436, 1453
AsuHPI GGTGA 1 cut(s) 921
AvaII GGWCC 3 cut(s) 922, 1436, 1453
BaeGI GKGCMC 1 cut(s) 1422
BanI GGYRCC 2 cut(s) 1297, 1417
BauI CACGAG 1 cut(s) 1448
Bbv12I GWGCWC 1 cut(s) 1308
BbvCI CCTCAGC 1 cut(s) 512
BbvI GCAGC 3 cut(s) 430, 520, 1093
BccI CCATC 6 cut(s) 58, 829, 857, 901, 908, 1019
BciT130I CCWGG 2 cut(s) 1317, 1480
BcoDI GTCTC 7 cut(s) 231, 239, 263, 283, 594, 626, 1385
BfaI CTAG 1 cut(s) 422
BfmI CTRYAG 1 cut(s) 613
BglII AGATCT 2 cut(s) 1168, 1291
BisI GCNGC 4 cut(s) 419, 509, 551, 1107
BlsI GCNGC 4 cut(s) 420, 510, 552, 1108
Bme1390I CCNGG 2 cut(s) 1317, 1480
Bme18I GGWCC 3 cut(s) 922, 1436, 1453
BmgT120I GGNCC 6 cut(s) 483, 552, 922, 1094, 1436, 1453
BmiI GGNNCC 2 cut(s) 1299, 1419
BmrFI CCNGG 2 cut(s) 1317, 1480
BmsI GCATC 4 cut(s) 415, 495, 1097, 1354
Bpu10I CCTNAGC 1 cut(s) 512
BpuEI CTTGAG 2 cut(s) 213, 818
BsaBI GATNNNNATC 1 cut(s) 144
BsaI GGTCTC 3 cut(s) 231, 594, 626
BsaJI CCNNGG 5 cut(s) 220, 541, 901, 1316, 1478
BsaWI WCCGGW 1 cut(s) 931
BsaXI ACNNNNNCTCC 1 cut(s) 1484
Bsc4I CCNNNNNNNGG 2 cut(s) 931, 1479
Bse118I RCCGGY 3 cut(s) 807, 931, 1096
Bse1I ACTGG 2 cut(s) 874, 1377
Bse3DI GCAATG 1 cut(s) 1083
Bse8I GATNNNNATC 1 cut(s) 144
BseBI CCWGG 2 cut(s) 1317, 1480
BseDI CCNNGG 5 cut(s) 220, 541, 901, 1316, 1478
BseGI GGATG 2 cut(s) 217, 1030
BseJI GATNNNNATC 1 cut(s) 144
BseLI CCNNNNNNNGG 2 cut(s) 931, 1479
BseMI GCAATG 1 cut(s) 1083
BseMII CTCAG 3 cut(s) 234, 503, 902
BseNI ACTGG 2 cut(s) 874, 1377
BseRI GAGGAG 2 cut(s) 168, 529
BseSI GKGCMC 1 cut(s) 1422
BseXI GCAGC 3 cut(s) 430, 520, 1093
Bsh1236I CGCG 1 cut(s) 130
BshFI GGCC 6 cut(s) 219, 484, 553, 723, 811, 1096
BshNI GGYRCC 2 cut(s) 1297, 1417
BshTI ACCGGT 1 cut(s) 931
BsiHKAI GWGCWC 1 cut(s) 1308
BsiSI CCGG 3 cut(s) 808, 932, 1097
BslFI GGGAC 1 cut(s) 392
BslI CCNNNNNNNGG 2 cut(s) 931, 1479
BsmAI GTCTC 7 cut(s) 231, 239, 263, 283, 594, 626, 1385
BsmFI GGGAC 1 cut(s) 392
BsmI GAATGC 4 cut(s) 532, 603, 1090, 1353
BsnI GGCC 6 cut(s) 219, 484, 553, 723, 811, 1096
Bso31I GGTCTC 3 cut(s) 231, 594, 626
Bsp1286I GDGCHC 2 cut(s) 1308, 1422
Bsp1407I TGTACA 1 cut(s) 459
Bsp143I GATC 4 cut(s) 193, 369, 1168, 1291
Bsp19I CCATGG 1 cut(s) 901
BspACI CCGC 4 cut(s) 550, 586, 746, 1468
BspANI GGCC 6 cut(s) 219, 484, 553, 723, 811, 1096
BspCNI CTCAG 3 cut(s) 235, 504, 901
BspFNI CGCG 1 cut(s) 130
BspLI GGNNCC 2 cut(s) 1299, 1419
BspPI GGATC 1 cut(s) 188
BspQI GCTCTTC 1 cut(s) 18
BspT107I GGYRCC 2 cut(s) 1297, 1417
BspTNI GGTCTC 3 cut(s) 231, 594, 626
BsrBI CCGCTC 1 cut(s) 550
BsrDI GCAATG 1 cut(s) 1083
BsrFI RCCGGY 3 cut(s) 807, 931, 1096
BsrGI TGTACA 1 cut(s) 459
BsrI ACTGG 2 cut(s) 874, 1377
BssAI RCCGGY 3 cut(s) 807, 931, 1096
BssECI CCNNGG 5 cut(s) 220, 541, 901, 1316, 1478
BssMI GATC 4 cut(s) 193, 369, 1168, 1291
BssSI CACGAG 1 cut(s) 1448
BssT1I CCWWGG 3 cut(s) 220, 541, 901
Bst2BI CACGAG 1 cut(s) 1448
Bst2UI CCWGG 2 cut(s) 1317, 1480
Bst4CI ACNGT 3 cut(s) 383, 911, 1310
Bst6I CTCTTC 4 cut(s) 18, 687, 695, 1347
BstAUI TGTACA 1 cut(s) 459
BstC8I GCNNGC 1 cut(s) 813
BstDEI CTNAG 4 cut(s) 243, 360, 512, 888
BstDSI CCRYGG 1 cut(s) 901
BstF5I GGATG 2 cut(s) 217, 1030
BstFNI CGCG 1 cut(s) 130
BstHHI GCGC 1 cut(s) 132
BstKTI GATC 4 cut(s) 196, 372, 1171, 1294
BstMAI GTCTC 7 cut(s) 231, 239, 263, 283, 594, 626, 1385
BstMBI GATC 4 cut(s) 193, 369, 1168, 1291
BstMWI GCNNNNNNNGC 2 cut(s) 607, 808
BstNI CCWGG 2 cut(s) 1317, 1480
BstNSI RCATGY 2 cut(s) 460, 466
BstSCI CCNGG 2 cut(s) 1315, 1478
BstSFI CTRYAG 1 cut(s) 613
BstSLI GKGCMC 1 cut(s) 1422
BstUI CGCG 1 cut(s) 130
BstV1I GCAGC 3 cut(s) 430, 520, 1093
BstX2I RGATCY 2 cut(s) 1168, 1291
BstYI RGATCY 2 cut(s) 1168, 1291
BsuRI GGCC 6 cut(s) 219, 484, 553, 723, 811, 1096
BtgI CCRYGG 1 cut(s) 901
BtsCI GGATG 2 cut(s) 217, 1030
BtsIMutI CAGTG 2 cut(s) 916, 1306
Cac8I GCNNGC 1 cut(s) 813
CfoI GCGC 1 cut(s) 132
Cfr10I RCCGGY 3 cut(s) 807, 931, 1096
Cfr13I GGNCC 6 cut(s) 483, 552, 922, 1094, 1436, 1453
Csp6I GTAC 3 cut(s) 460, 867, 1239
CspAI ACCGGT 1 cut(s) 931
CviQI GTAC 3 cut(s) 460, 867, 1239
DdeI CTNAG 4 cut(s) 243, 360, 512, 888
DpnI GATC 4 cut(s) 195, 371, 1170, 1293
DpnII GATC 4 cut(s) 193, 369, 1168, 1291
Eam1104I CTCTTC 4 cut(s) 18, 687, 695, 1347
EarI CTCTTC 4 cut(s) 18, 687, 695, 1347
EciI GGCGGA 1 cut(s) 1457
Eco130I CCWWGG 3 cut(s) 220, 541, 901
Eco147I AGGCCT 1 cut(s) 219
Eco31I GGTCTC 3 cut(s) 231, 594, 626
Eco32I GATATC 2 cut(s) 142, 1227
Eco47I GGWCC 3 cut(s) 922, 1436, 1453
EcoRI GAATTC 1 cut(s) 37
EcoRII CCWGG 2 cut(s) 1315, 1478
EcoRV GATATC 2 cut(s) 142, 1227
EcoT14I CCWWGG 3 cut(s) 220, 541, 901
EcoT22I ATGCAT 2 cut(s) 496, 1090
ErhI CCWWGG 3 cut(s) 220, 541, 901
FaqI GGGAC 1 cut(s) 392
FauI CCCGC 1 cut(s) 753
FblI GTMKAC 1 cut(s) 50
Fnu4HI GCNGC 4 cut(s) 419, 509, 551, 1107
FokI GGATG 2 cut(s) 224, 1037
Fsp4HI GCNGC 4 cut(s) 419, 509, 551, 1107
FspBI CTAG 1 cut(s) 422
GlaI GCGC 1 cut(s) 131
GluI GCNGC 4 cut(s) 419, 509, 551, 1107
HaeIII GGCC 6 cut(s) 219, 484, 553, 723, 811, 1096
HapII CCGG 3 cut(s) 808, 932, 1097
HhaI GCGC 1 cut(s) 132
Hin6I GCGC 1 cut(s) 130
HinP1I GCGC 1 cut(s) 130
HincII GTYRAC 2 cut(s) 885, 1503
HindII GTYRAC 2 cut(s) 885, 1503
HinfI GANTC 5 cut(s) 68, 109, 291, 787, 1046
HpaII CCGG 3 cut(s) 808, 932, 1097
HphI GGTGA 1 cut(s) 921
Hpy166II GTNNAC 7 cut(s) 51, 571, 708, 733, 885, 992, 1503
Hpy188I TCNGA 3 cut(s) 114, 163, 898
Hpy188III TCNNGA 6 cut(s) 137, 377, 683, 791, 1022, 1358
Hpy8I GTNNAC 7 cut(s) 51, 571, 708, 733, 885, 992, 1503
Hpy99I CGWCG 1 cut(s) 1431
HpyAV CCTTC 2 cut(s) 565, 1127
HpyCH4III ACNGT 3 cut(s) 383, 911, 1310
HpyCH4IV ACGT 2 cut(s) 53, 1426
HpyCH4V TGCA 9 cut(s) 282, 311, 366, 418, 494, 508, 601, 1088, 1109
HpyF10VI GCNNNNNNNGC 2 cut(s) 607, 808
HpyF3I CTNAG 4 cut(s) 243, 360, 512, 888
HpySE526I ACGT 2 cut(s) 53, 1426
HspAI GCGC 1 cut(s) 130
Kzo9I GATC 4 cut(s) 193, 369, 1168, 1291
LguI GCTCTTC 1 cut(s) 18
LmnI GCTCC 1 cut(s) 1492
Lsp1109I GCAGC 3 cut(s) 430, 520, 1093
LweI GCATC 4 cut(s) 415, 495, 1097, 1354
MaeI CTAG 1 cut(s) 422
MaeII ACGT 2 cut(s) 53, 1426
MaeIII GTNAC 5 cut(s) 200, 518, 927, 1099, 1186
MalI GATC 4 cut(s) 195, 371, 1170, 1293
MbiI CCGCTC 1 cut(s) 550
MboI GATC 4 cut(s) 193, 369, 1168, 1291
MboII GAAGA 9 cut(s) 5, 514, 704, 712, 1093, 1163, 1334, 1373, 1454
MflI RGATCY 2 cut(s) 1168, 1291
MhlI GDGCHC 2 cut(s) 1308, 1422
MluCI AATT 9 cut(s) 37, 92, 654, 838, 854, 877, 1204, 1322, 1335
MlyI GAGTC 2 cut(s) 285, 1055
MmeI TCCRAC 2 cut(s) 206, 1370
Mph1103I ATGCAT 2 cut(s) 496, 1090
MroXI GAANNNNTTC 2 cut(s) 12, 960
MseI TTAA 4 cut(s) 1059, 1182, 1260, 1281
MslI CAYNNNNRTG 3 cut(s) 461, 972, 1041
MspA1I CMGCKG 2 cut(s) 511, 1106
MspI CCGG 3 cut(s) 808, 932, 1097
MspR9I CCNGG 2 cut(s) 1317, 1480
Mva1269I GAATGC 4 cut(s) 532, 603, 1090, 1353
MvaI CCWGG 2 cut(s) 1317, 1480
MvnI CGCG 1 cut(s) 130
MwoI GCNNNNNNNGC 2 cut(s) 607, 808
NcoI CCATGG 1 cut(s) 901
NdeII GATC 4 cut(s) 193, 369, 1168, 1291
NlaIV GGNNCC 2 cut(s) 1299, 1419
NmeAIII GCCGAG 1 cut(s) 749
NmuCI GTSAC 2 cut(s) 200, 927
NsiI ATGCAT 2 cut(s) 496, 1090
NspI RCATGY 2 cut(s) 460, 466
PceI AGGCCT 1 cut(s) 219
PciI ACATGT 2 cut(s) 456, 462
PciSI GCTCTTC 1 cut(s) 18
PcsI WCGNNNNNNNCGW 1 cut(s) 59
PctI GAATGC 4 cut(s) 532, 603, 1090, 1353
PdmI GAANNNNTTC 2 cut(s) 12, 960
PfeI GAWTC 3 cut(s) 68, 109, 787
PinAI ACCGGT 1 cut(s) 931
PkrI GCNGC 4 cut(s) 420, 510, 552, 1108
PleI GAGTC 2 cut(s) 285, 1054
PpsI GAGTC 2 cut(s) 285, 1054
PscI ACATGT 2 cut(s) 456, 462
Psp6I CCWGG 2 cut(s) 1315, 1478
PspGI CCWGG 2 cut(s) 1315, 1478
PspN4I GGNNCC 2 cut(s) 1299, 1419
PspPI GGNCC 6 cut(s) 483, 552, 922, 1094, 1436, 1453
PsuI RGATCY 2 cut(s) 1168, 1291
PvuII CAGCTG 2 cut(s) 511, 1106
RsaI GTAC 3 cut(s) 461, 868, 1240
RsaNI GTAC 3 cut(s) 460, 867, 1239
RseI CAYNNNNRTG 3 cut(s) 461, 972, 1041
SapI GCTCTTC 1 cut(s) 18
SaqAI TTAA 4 cut(s) 1059, 1182, 1260, 1281
SatI GCNGC 4 cut(s) 419, 509, 551, 1107
Sau3AI GATC 4 cut(s) 193, 369, 1168, 1291
Sau96I GGNCC 6 cut(s) 483, 552, 922, 1094, 1436, 1453
SchI GAGTC 2 cut(s) 285, 1055
ScrFI CCNGG 2 cut(s) 1317, 1480
SduI GDGCHC 2 cut(s) 1308, 1422
SfaNI GCATC 4 cut(s) 415, 495, 1097, 1354
SfcI CTRYAG 1 cut(s) 613
SinI GGWCC 3 cut(s) 922, 1436, 1453
SmiMI CAYNNNNRTG 3 cut(s) 461, 972, 1041
SmlI CTYRAG 2 cut(s) 228, 797
SmoI CTYRAG 2 cut(s) 228, 797
Sse9I AATT 9 cut(s) 37, 92, 654, 838, 854, 877, 1204, 1322, 1335
SseBI AGGCCT 1 cut(s) 219
SsiI CCGC 4 cut(s) 550, 586, 746, 1468
SspMI CTAG 1 cut(s) 422
StuI AGGCCT 1 cut(s) 219
StyD4I CCNGG 2 cut(s) 1315, 1478
StyI CCWWGG 3 cut(s) 220, 541, 901
TaaI ACNGT 3 cut(s) 383, 911, 1310
TaiI ACGT 2 cut(s) 56, 1429
TaqI TCGA 5 cut(s) 62, 294, 595, 1407, 1429
TasI AATT 9 cut(s) 37, 92, 654, 838, 854, 877, 1204, 1322, 1335
TatI WGTACW 2 cut(s) 459, 1238
TauI GCSGC 1 cut(s) 553
TfiI GAWTC 3 cut(s) 68, 109, 787
Tru1I TTAA 4 cut(s) 1059, 1182, 1260, 1281
Tru9I TTAA 4 cut(s) 1059, 1182, 1260, 1281
TscAI CASTG 2 cut(s) 916, 1313
TseFI GTSAC 2 cut(s) 200, 927
TseI GCWGC 3 cut(s) 418, 508, 1106
Tsp45I GTSAC 2 cut(s) 200, 927
TspDTI ATGAA 9 cut(s) 105, 109, 122, 252, 539, 632, 1094, 1146, 1246
TspGWI ACGGA 1 cut(s) 1445
TspRI CASTG 2 cut(s) 916, 1313
VpaK11BI GGWCC 3 cut(s) 922, 1436, 1453
XapI RAATTY 4 cut(s) 37, 838, 877, 1322
XceI RCATGY 2 cut(s) 460, 466
XmiI GTMKAC 1 cut(s) 50
XmnI GAANNNNTTC 2 cut(s) 12, 960
XspI CTAG 1 cut(s) 422
Zsp2I ATGCAT 2 cut(s) 496, 1090
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.