Rroxscaffold_4G00289890

SLT1 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0007681
Physical Location & Seq
Forward (+)
10518737 .. 10524588
5852 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00289890.1

Sequence Viewer

Length: 1602 bp
ATGGCTGAGAGGACTCGCTTCCTTCGAGAAATGTTCACATGGGAACACACAGACAAAGACAGTGATATGTCATATGATTACATGCTAATGGACCTCTCTAATTTCCCTAACTATACTCATAGCCATAGTGATGGGTCTGCAACTATTTGGATGATTTGTTTGTGGAATCATGGGGAAGCTCTTCTCACTACTTTGTCCATAGAGAATTCTCATTTGTCTACGTTGTTGTCGATGGATTCTGGTTCTTTGGCACATGATGAATTGGAGAGAGAGATGAATCGGACTTTCATACTTTCACGCCCTCCTGATATCAATCTCCCGTTGCTGTCTGAACCAAGCCCACCTCCTCCAACTTGGAATGATCCATGTGACATCTTGGATGTAGGCCTTGGGTCTCAAGTGTATGAAGCTGAGACAACAATCAGTCTCCCCAAAGTCGCAAGGAAATGCAACAAGAGACTCGATAGTGTTTGGGGTGCATGGTTTTTCTTTAGCTTCTATTTCAAGCCTGTTTTGAACGAGAAGTCTAAGTGCAAGATCATTCGGGACAGTAATGGGGTGTCTGGGTTTGACAAAACAGACTTGCAGCTAGATGCTTTCTTGGTTCAGCATGATATGGAAAACATGTACATGTGGGTTTTCAAGGAAAGGCCCGAAAATGCATTGGGGAAGATGCAGCTGAGGAGTTACATGAATGGGCATTCTCGCCAAGGAGAGCGGCCCTTCCCATTTAGTGTGGACAGAGGTTTTGTGCGGTCTCATCGAATGCAGAGGAAGCACTACAGGGGTCTCTCTAACCCTCAATGTGTTCATGGGATTGAAATTGTTAGGACACCCAACCTCATGTGTCTTGATGAGGAAGAGAGGAAGAGGTGGACAGAGCTTACAGGCCGAGATGTAAACTTCTCAATCCCGCTTGAAGCAAGTGATTTTGGTTCTTGGAGGAACATACAGAATCCAGAACTTGAGCTTGACCGGCCTGCCCCTCCATCAAAGAACAATATAAATTCTCATCAAAGAAAATTGCTTGATGGTACTGGTTTGAATTTGTCAACTCAGCCATCAGACCATGGAAACAGTGATGGAATGGACCTGTCACCGGTCTGCCATAAGCGAAAGAAAGAACTCTTTCCTCATGGAAATGACAATGATTGCTGTTTACCCAATAACCACCATTTTGACAGAGTTTTGGATGGCAAAATCCACACAGATGAGTCATCTTGGTTTAATGAGTTTAGTGGGGCAATGAAGAACGCATCTGGGCCGGTTACAGCTGCAAAGACAATATACGAGGACGATGAAGGGTTTTTGGTCATTGTCAGCTTACCTTTTGTAGATCTTCAAAGGGTTAAAGTTACTTGGAGGAATACTAATTCACATGGGATTGTAAAGATATCTTGTGTGAGTACAGCTTGTATGCCATTCATTAAGAGGCGTGATAGAACATTTAAGCTAACAGATCTGGCACCAGAGCACTGTCCTCCTGGGGAATTTGTCAGGAAATTGCTCTTCCAACTCGCATTCCAGAAGATGCCAAACTGGAAGCGTATTGTGATGAGACAGGAACAATGCTTGAAGTTATGGTGCCCAAACGTCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

533

Amino Acids

61.54

Weight (kDa)

6.38

Isoelectric Point (pI)

47.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8041 PF26145 149 - 315 8.1e-104 Domain of unknown function (DUF8041)
ACL_Hsps-like PF26144 423 - 509 5.5e-42 Hsps-like alpha-crystallin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 1465, 1584
AccBSI CCGCTC 1 cut(s) 718
AccI GTMKAC 1 cut(s) 218
AciI CCGC 3 cut(s) 718, 754, 914
AclWI GGATC 1 cut(s) 356
AcsI RAATTY 4 cut(s) 205, 1006, 1045, 1490
AfaI GTAC 3 cut(s) 629, 1036, 1408
AfiI CCNNNNNNNGG 1 cut(s) 1099
AflIII ACRYGT 2 cut(s) 624, 630
AgeI ACCGGT 1 cut(s) 1099
AgsI TTSAA 8 cut(s) 505, 517, 643, 821, 920, 1045, 1343, 1576
AjnI CCWGG 1 cut(s) 1483
Alw21I GWGCWC 1 cut(s) 1476
Alw26I GTCTC 7 cut(s) 399, 407, 431, 451, 762, 794, 1552
AlwI GGATC 1 cut(s) 356
AoxI GGCC 6 cut(s) 385, 650, 719, 889, 977, 1262
ApeKI GCWGC 3 cut(s) 586, 676, 1274
ApoI RAATTY 4 cut(s) 205, 1006, 1045, 1490
ArsI GACNNNNNNTTYG 2 cut(s) 731, 763
AsiGI ACCGGT 1 cut(s) 1099
Asp700I GAANNNNTTC 2 cut(s) 180, 1128
AspS9I GGNCC 5 cut(s) 91, 651, 720, 1090, 1262
AsuHPI GGTGA 1 cut(s) 1089
AvaII GGWCC 2 cut(s) 91, 1090
BaeGI GKGCMC 1 cut(s) 1589
BanI GGYRCC 2 cut(s) 1465, 1584
Bbv12I GWGCWC 1 cut(s) 1476
BbvCI CCTCAGC 1 cut(s) 680
BbvI GCAGC 3 cut(s) 598, 688, 1261
BccI CCATC 7 cut(s) 125, 226, 997, 1025, 1069, 1076, 1187
BciT130I CCWGG 1 cut(s) 1485
BcoDI GTCTC 7 cut(s) 399, 407, 431, 451, 762, 794, 1552
BfaI CTAG 1 cut(s) 590
BfmI CTRYAG 1 cut(s) 781
BglII AGATCT 2 cut(s) 1336, 1459
BisI GCNGC 4 cut(s) 587, 677, 719, 1275
BlsI GCNGC 4 cut(s) 588, 678, 720, 1276
Bme1390I CCNGG 1 cut(s) 1485
Bme18I GGWCC 2 cut(s) 91, 1090
BmgT120I GGNCC 5 cut(s) 91, 651, 720, 1090, 1262
BmiI GGNNCC 2 cut(s) 1467, 1586
BmrFI CCNGG 1 cut(s) 1485
BmsI GCATC 4 cut(s) 583, 663, 1265, 1521
Bpu10I CCTNAGC 1 cut(s) 680
BpuEI CTTGAG 2 cut(s) 381, 986
BsaBI GATNNNNATC 1 cut(s) 312
BsaI GGTCTC 3 cut(s) 399, 762, 794
BsaJI CCNNGG 4 cut(s) 388, 709, 1069, 1484
BsaWI WCCGGW 1 cut(s) 1099
Bsc4I CCNNNNNNNGG 1 cut(s) 1099
Bse118I RCCGGY 3 cut(s) 975, 1099, 1264
Bse1I ACTGG 2 cut(s) 1042, 1544
Bse3DI GCAATG 1 cut(s) 1251
Bse8I GATNNNNATC 1 cut(s) 312
BseBI CCWGG 1 cut(s) 1485
BseDI CCNNGG 4 cut(s) 388, 709, 1069, 1484
BseGI GGATG 3 cut(s) 156, 385, 1198
BseJI GATNNNNATC 1 cut(s) 312
BseLI CCNNNNNNNGG 1 cut(s) 1099
BseMI GCAATG 1 cut(s) 1251
BseMII CTCAG 3 cut(s) 402, 671, 1070
BseNI ACTGG 2 cut(s) 1042, 1544
BseRI GAGGAG 2 cut(s) 336, 697
BseSI GKGCMC 1 cut(s) 1589
BseXI GCAGC 3 cut(s) 598, 688, 1261
BshFI GGCC 6 cut(s) 387, 652, 721, 891, 979, 1264
BshNI GGYRCC 2 cut(s) 1465, 1584
BshTI ACCGGT 1 cut(s) 1099
BsiHKAI GWGCWC 1 cut(s) 1476
BsiSI CCGG 3 cut(s) 976, 1100, 1265
BslFI GGGAC 1 cut(s) 560
BslI CCNNNNNNNGG 1 cut(s) 1099
BsmAI GTCTC 7 cut(s) 399, 407, 431, 451, 762, 794, 1552
BsmFI GGGAC 1 cut(s) 560
BsmI GAATGC 3 cut(s) 700, 771, 1520
BsnI GGCC 6 cut(s) 387, 652, 721, 891, 979, 1264
Bso31I GGTCTC 3 cut(s) 399, 762, 794
Bsp1286I GDGCHC 2 cut(s) 1476, 1589
Bsp1407I TGTACA 1 cut(s) 627
Bsp143I GATC 4 cut(s) 361, 537, 1336, 1459
Bsp19I CCATGG 1 cut(s) 1069
BspACI CCGC 3 cut(s) 718, 754, 914
BspANI GGCC 6 cut(s) 387, 652, 721, 891, 979, 1264
BspCNI CTCAG 3 cut(s) 403, 672, 1069
BspLI GGNNCC 2 cut(s) 1467, 1586
BspPI GGATC 1 cut(s) 356
BspQI GCTCTTC 2 cut(s) 186, 1514
BspT107I GGYRCC 2 cut(s) 1465, 1584
BspTNI GGTCTC 3 cut(s) 399, 762, 794
BsrBI CCGCTC 1 cut(s) 718
BsrDI GCAATG 1 cut(s) 1251
BsrFI RCCGGY 3 cut(s) 975, 1099, 1264
BsrGI TGTACA 1 cut(s) 627
BsrI ACTGG 2 cut(s) 1042, 1544
BssAI RCCGGY 3 cut(s) 975, 1099, 1264
BssECI CCNNGG 4 cut(s) 388, 709, 1069, 1484
BssMI GATC 4 cut(s) 361, 537, 1336, 1459
BssT1I CCWWGG 3 cut(s) 388, 709, 1069
Bst2UI CCWGG 1 cut(s) 1485
Bst4CI ACNGT 4 cut(s) 62, 551, 1079, 1478
Bst6I CTCTTC 4 cut(s) 186, 855, 863, 1514
BstAUI TGTACA 1 cut(s) 627
BstC8I GCNNGC 1 cut(s) 981
BstDEI CTNAG 5 cut(s) 6, 411, 528, 680, 1056
BstDSI CCRYGG 1 cut(s) 1069
BstF5I GGATG 3 cut(s) 156, 385, 1198
BstKTI GATC 4 cut(s) 364, 540, 1339, 1462
BstMAI GTCTC 7 cut(s) 399, 407, 431, 451, 762, 794, 1552
BstMBI GATC 4 cut(s) 361, 537, 1336, 1459
BstMWI GCNNNNNNNGC 2 cut(s) 775, 976
BstNI CCWGG 1 cut(s) 1485
BstNSI RCATGY 3 cut(s) 85, 628, 634
BstSCI CCNGG 1 cut(s) 1483
BstSFI CTRYAG 1 cut(s) 781
BstSLI GKGCMC 1 cut(s) 1589
BstV1I GCAGC 3 cut(s) 598, 688, 1261
BstX2I RGATCY 2 cut(s) 1336, 1459
BstXI CCANNNNNNTGG 1 cut(s) 131
BstYI RGATCY 2 cut(s) 1336, 1459
BsuRI GGCC 6 cut(s) 387, 652, 721, 891, 979, 1264
BtgI CCRYGG 1 cut(s) 1069
BtsCI GGATG 3 cut(s) 156, 385, 1198
BtsIMutI CAGTG 3 cut(s) 67, 1084, 1474
Cac8I GCNNGC 1 cut(s) 981
Cfr10I RCCGGY 3 cut(s) 975, 1099, 1264
Cfr13I GGNCC 5 cut(s) 91, 651, 720, 1090, 1262
Csp6I GTAC 3 cut(s) 628, 1035, 1407
CspAI ACCGGT 1 cut(s) 1099
CviQI GTAC 3 cut(s) 628, 1035, 1407
DdeI CTNAG 5 cut(s) 6, 411, 528, 680, 1056
DpnI GATC 4 cut(s) 363, 539, 1338, 1461
DpnII GATC 4 cut(s) 361, 537, 1336, 1459
Eam1104I CTCTTC 4 cut(s) 186, 855, 863, 1514
EarI CTCTTC 4 cut(s) 186, 855, 863, 1514
Eco130I CCWWGG 3 cut(s) 388, 709, 1069
Eco147I AGGCCT 1 cut(s) 387
Eco31I GGTCTC 3 cut(s) 399, 762, 794
Eco32I GATATC 2 cut(s) 310, 1395
Eco47I GGWCC 2 cut(s) 91, 1090
EcoRI GAATTC 1 cut(s) 205
EcoRII CCWGG 1 cut(s) 1483
EcoRV GATATC 2 cut(s) 310, 1395
EcoT14I CCWWGG 3 cut(s) 388, 709, 1069
EcoT22I ATGCAT 1 cut(s) 664
ErhI CCWWGG 3 cut(s) 388, 709, 1069
FaqI GGGAC 1 cut(s) 560
FauI CCCGC 1 cut(s) 921
FauNDI CATATG 1 cut(s) 73
FblI GTMKAC 1 cut(s) 218
Fnu4HI GCNGC 4 cut(s) 587, 677, 719, 1275
FokI GGATG 3 cut(s) 163, 392, 1205
Fsp4HI GCNGC 4 cut(s) 587, 677, 719, 1275
FspBI CTAG 1 cut(s) 590
GluI GCNGC 4 cut(s) 587, 677, 719, 1275
HaeIII GGCC 6 cut(s) 387, 652, 721, 891, 979, 1264
HapII CCGG 3 cut(s) 976, 1100, 1265
HincII GTYRAC 1 cut(s) 1053
HindII GTYRAC 1 cut(s) 1053
HinfI GANTC 7 cut(s) 13, 166, 236, 277, 459, 955, 1214
HpaII CCGG 3 cut(s) 976, 1100, 1265
HphI GGTGA 1 cut(s) 1089
Hpy166II GTNNAC 7 cut(s) 36, 219, 739, 876, 901, 1053, 1160
Hpy188I TCNGA 3 cut(s) 282, 331, 1066
Hpy188III TCNNGA 7 cut(s) 26, 305, 545, 851, 959, 1498, 1525
Hpy8I GTNNAC 7 cut(s) 36, 219, 739, 876, 901, 1053, 1160
Hpy99I CGWCG 1 cut(s) 1598
HpyAV CCTTC 3 cut(s) 32, 733, 1295
HpyCH4III ACNGT 4 cut(s) 62, 551, 1079, 1478
HpyCH4IV ACGT 2 cut(s) 221, 1593
HpyCH4V TGCA 9 cut(s) 140, 450, 479, 534, 586, 662, 676, 769, 1277
HpyF10VI GCNNNNNNNGC 2 cut(s) 775, 976
HpyF3I CTNAG 5 cut(s) 6, 411, 528, 680, 1056
HpySE526I ACGT 2 cut(s) 221, 1593
Kzo9I GATC 4 cut(s) 361, 537, 1336, 1459
LguI GCTCTTC 2 cut(s) 186, 1514
Lsp1109I GCAGC 3 cut(s) 598, 688, 1261
LweI GCATC 4 cut(s) 583, 663, 1265, 1521
MaeI CTAG 1 cut(s) 590
MaeII ACGT 2 cut(s) 221, 1593
MaeIII GTNAC 5 cut(s) 368, 686, 1095, 1267, 1354
MalI GATC 4 cut(s) 363, 539, 1338, 1461
MbiI CCGCTC 1 cut(s) 718
MboI GATC 4 cut(s) 361, 537, 1336, 1459
MboII GAAGA 8 cut(s) 173, 682, 872, 880, 1261, 1331, 1501, 1540
MflI RGATCY 2 cut(s) 1336, 1459
MhlI GDGCHC 2 cut(s) 1476, 1589
MlyI GAGTC 3 cut(s) 7, 453, 1223
MmeI TCCRAC 2 cut(s) 374, 1537
Mph1103I ATGCAT 1 cut(s) 664
MroXI GAANNNNTTC 2 cut(s) 180, 1128
MseI TTAA 4 cut(s) 1227, 1350, 1428, 1449
MslI CAYNNNNRTG 5 cut(s) 86, 129, 629, 1140, 1209
MspA1I CMGCKG 2 cut(s) 679, 1274
MspI CCGG 3 cut(s) 976, 1100, 1265
MspR9I CCNGG 1 cut(s) 1485
Mva1269I GAATGC 3 cut(s) 700, 771, 1520
MvaI CCWGG 1 cut(s) 1485
MwoI GCNNNNNNNGC 2 cut(s) 775, 976
NcoI CCATGG 1 cut(s) 1069
NdeI CATATG 1 cut(s) 73
NdeII GATC 4 cut(s) 361, 537, 1336, 1459
NlaIV GGNNCC 2 cut(s) 1467, 1586
NmeAIII GCCGAG 1 cut(s) 917
NmuCI GTSAC 2 cut(s) 368, 1095
NsiI ATGCAT 1 cut(s) 664
NspI RCATGY 3 cut(s) 85, 628, 634
PceI AGGCCT 1 cut(s) 387
PciI ACATGT 2 cut(s) 624, 630
PciSI GCTCTTC 2 cut(s) 186, 1514
PcsI WCGNNNNNNNCGW 2 cut(s) 22, 227
PctI GAATGC 3 cut(s) 700, 771, 1520
PdmI GAANNNNTTC 2 cut(s) 180, 1128
PfeI GAWTC 4 cut(s) 166, 236, 277, 955
PinAI ACCGGT 1 cut(s) 1099
PkrI GCNGC 4 cut(s) 588, 678, 720, 1276
PleI GAGTC 3 cut(s) 7, 453, 1222
PpsI GAGTC 3 cut(s) 7, 453, 1222
PscI ACATGT 2 cut(s) 624, 630
Psp6I CCWGG 1 cut(s) 1483
PspGI CCWGG 1 cut(s) 1483
PspN4I GGNNCC 2 cut(s) 1467, 1586
PspPI GGNCC 5 cut(s) 91, 651, 720, 1090, 1262
PsuI RGATCY 2 cut(s) 1336, 1459
PvuII CAGCTG 2 cut(s) 679, 1274
RsaI GTAC 3 cut(s) 629, 1036, 1408
RsaNI GTAC 3 cut(s) 628, 1035, 1407
RseI CAYNNNNRTG 5 cut(s) 86, 129, 629, 1140, 1209
SapI GCTCTTC 2 cut(s) 186, 1514
SaqAI TTAA 4 cut(s) 1227, 1350, 1428, 1449
SatI GCNGC 4 cut(s) 587, 677, 719, 1275
Sau3AI GATC 4 cut(s) 361, 537, 1336, 1459
Sau96I GGNCC 5 cut(s) 91, 651, 720, 1090, 1262
SchI GAGTC 3 cut(s) 7, 453, 1223
ScrFI CCNGG 1 cut(s) 1485
SduI GDGCHC 2 cut(s) 1476, 1589
SfaNI GCATC 4 cut(s) 583, 663, 1265, 1521
SfcI CTRYAG 1 cut(s) 781
SinI GGWCC 2 cut(s) 91, 1090
SmiMI CAYNNNNRTG 5 cut(s) 86, 129, 629, 1140, 1209
SmlI CTYRAG 2 cut(s) 396, 965
SmoI CTYRAG 2 cut(s) 396, 965
SseBI AGGCCT 1 cut(s) 387
SsiI CCGC 3 cut(s) 718, 754, 914
SspMI CTAG 1 cut(s) 590
StuI AGGCCT 1 cut(s) 387
StyD4I CCNGG 1 cut(s) 1483
StyI CCWWGG 3 cut(s) 388, 709, 1069
TaaI ACNGT 4 cut(s) 62, 551, 1079, 1478
TaiI ACGT 2 cut(s) 224, 1596
TaqI TCGA 5 cut(s) 25, 230, 462, 763, 1596
TatI WGTACW 2 cut(s) 627, 1406
TauI GCSGC 1 cut(s) 721
TfiI GAWTC 4 cut(s) 166, 236, 277, 955
Tru1I TTAA 4 cut(s) 1227, 1350, 1428, 1449
Tru9I TTAA 4 cut(s) 1227, 1350, 1428, 1449
TscAI CASTG 3 cut(s) 67, 1084, 1481
TseFI GTSAC 2 cut(s) 368, 1095
TseI GCWGC 3 cut(s) 586, 676, 1274
Tsp45I GTSAC 2 cut(s) 368, 1095
TspDTI ATGAA 9 cut(s) 273, 277, 290, 420, 707, 800, 1262, 1314, 1414
TspRI CASTG 3 cut(s) 67, 1084, 1481
VpaK11BI GGWCC 2 cut(s) 91, 1090
XapI RAATTY 4 cut(s) 205, 1006, 1045, 1490
XceI RCATGY 3 cut(s) 85, 628, 634
XmiI GTMKAC 1 cut(s) 218
XmnI GAANNNNTTC 2 cut(s) 180, 1128
XspI CTAG 1 cut(s) 590
Zsp2I ATGCAT 1 cut(s) 664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.