FvH4_7g22090

SLT1 protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
17507605 .. 17510478
2874 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g22090.t1

Sequence Viewer

Length: 1512 bp
ATGGGGGAAGCTCTTCTCACTACTCTGTCCATCGAGAATTCTCATCATTTGTCTACATTGTTGTCGATGGATTCGGGTTCTTTGGCACATGATGAGTTGGAGAGAGAGATGAATCGGACTTTCATACTTTCCCGCCCTCCTGATATTAATCTCCCATTGCTGTCTGAACCAAGCCCGCCTCCTCCCACATGGAATGATCCATGTGACATCTTAGACGTAGGCCTCGGTTCTCAAGTTTATGAGGCTGAGACAACAATCAGTCTCCCCAAAGTCGCAAAGAAATGCAACAAGAGACTCGACAGCATTTGGGGTGCTTGGTTTTTCTTTAGCTTCTATTTCAAGCCTGTTTTGAACGAGAAGTCCAAGGGCAAGATCATTCGGGACAGTAATGGGGTGTCGGGGTACGACAAAACAGACTTGCAGCTAGATGCTTTCTTGGTGCAGCATGATATGGAAAACATGTACATGTGGGTTTTCAAGGAAAGGCCTGAAAATGCATTGGGGAAGATGCAGCTGAGGAGTTACATGAATGGGCATTCCCGCCAAGGAGAGCGCCCCTTCCCATTTAGTGTGGACAGGGGTTTTGTGCGGTCTCATCGAATGCAGAGGAAGCACTACAGGGGTCTATCGAACCCACAATGCGTTCATGGGATTGAAATTGTTAGGACACCCAATCTCATGTGTCTTGATGAGGAAGAGAGGAAGAGGTGGACAGAGCTTACAGGCCGAGATGTAAACTTTTCTATTCCAATTGAAGCAAGTGATTTTGGTTCTTGGAGGAACATACAGAATCCAGAATTTGAGCTTGAGCGGCCTGCCCCTCCATCAAAGAACAATATAAATTCTCACCAGAGAAAATTGCTCGATGGTACTGGTTTGAATTTGTCAACTCAGCCATCAGACCATGGAAACAGTGATGGAATGGACCTGTCACCAGTCTCCAATAAGAGGAAGAAGGAACTCTTTCCGCATGGAAATGAAAATGATTGCTGTTTACCCAATGGCCAACATTTTGACAGAGTTTTGGATGGCAAGATCCACACAGATGAGTCATCCTGGTTTAATGAGTTTAGTGGGGCAATGAAGAATGCATCTGGGCCAGTTACAGCTGCAAAGTCTATATATGAGGACGATGAAGGGTTTTTGGTCATTGTCAGCTTGCCTTTTGTAGATTTTCAAAGGGTTAAAGTTACTTGGAGGAATACTAATTCACAAGGGATTGTAAAGATATCTTGTGTGAGTACAGCATGTATGCCATTCATTAAGAGACGTGATAGAACATTTAAGCTAACAGATCCAGCACCAGAGCACTGTCCTCCTGGGGAATTTGTCAGGGAAATTGCTCTGCCTACCCGCATTCCAGAAGATGCTAAACTGGAAGCCTATTGTGATGAGACGGGAACAATGCTCGAAATTATGGTGCCCAAACATCGAGTCGGACCAGAAGAACATGAGGTCCGTGTGTGCCTCCGCCCCTCTCCCTGGAACGATAGGGAGCATTTGTTGACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

504

Amino Acids

57.37

Weight (kDa)

5.97

Isoelectric Point (pI)

47.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8041 PF26145 94 - 260 9.6e-104 Domain of unknown function (DUF8041)
ACL_Hsps-like PF26144 368 - 476 3.1e-59 Hsps-like alpha-crystallin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1420
AccBSI CCGCTC 1 cut(s) 811
AccI GTMKAC 1 cut(s) 53
AciI CCGC 8 cut(s) 133, 176, 541, 589, 811, 968, 1354, 1471
AclWI GGATC 3 cut(s) 191, 1030, 1289
AcoI YGGCCR 1 cut(s) 1003
AcsI RAATTY 5 cut(s) 37, 797, 841, 880, 1325
AfaI GTAC 4 cut(s) 404, 464, 871, 1243
AfiI CCNNNNNNNGG 2 cut(s) 948, 1482
AflIII ACRYGT 2 cut(s) 459, 465
AgsI TTSAA 7 cut(s) 340, 352, 478, 656, 755, 880, 1178
AjiI CACGTC 1 cut(s) 1271
AjnI CCWGG 3 cut(s) 1055, 1318, 1481
AloI GAACNNNNNNTCC 4 cut(s) 344, 376, 1440, 1472
AluBI AGCT 9 cut(s) 11, 330, 424, 514, 718, 805, 1109, 1158, 1288
AluI AGCT 9 cut(s) 11, 330, 424, 514, 718, 805, 1109, 1158, 1288
Alw21I GWGCWC 1 cut(s) 1311
Alw26I GTCTC 7 cut(s) 242, 266, 286, 597, 943, 1261, 1388
AlwI GGATC 3 cut(s) 191, 1030, 1289
AoxI GGCC 6 cut(s) 220, 485, 724, 812, 1003, 1097
ApeKI GCWGC 4 cut(s) 421, 442, 511, 1109
ApoI RAATTY 5 cut(s) 37, 797, 841, 880, 1325
ArsI GACNNNNNNTTYG 4 cut(s) 566, 598, 1419, 1451
AseI ATTAAT 1 cut(s) 147
Asp700I GAANNNNTTC 2 cut(s) 12, 963
AspLEI GCGC 1 cut(s) 555
AspS9I GGNCC 4 cut(s) 925, 1097, 1439, 1456
AsuHPI GGTGA 2 cut(s) 839, 924
AvaII GGWCC 3 cut(s) 925, 1439, 1456
BaeGI GKGCMC 1 cut(s) 1425
BalI TGGCCA 1 cut(s) 1005
BanI GGYRCC 1 cut(s) 1420
Bbv12I GWGCWC 1 cut(s) 1311
BbvCI CCTCAGC 1 cut(s) 515
BbvI GCAGC 4 cut(s) 433, 454, 523, 1096
BccI CCATC 7 cut(s) 38, 61, 832, 860, 904, 911, 1022
BciT130I CCWGG 3 cut(s) 1057, 1320, 1483
BcoDI GTCTC 7 cut(s) 242, 266, 286, 597, 943, 1261, 1388
BfaI CTAG 1 cut(s) 425
BfmI CTRYAG 1 cut(s) 616
BfoI RGCGCY 1 cut(s) 556
BisI GCNGC 5 cut(s) 422, 443, 512, 812, 1110
BlsI GCNGC 5 cut(s) 423, 444, 513, 813, 1111
Bme1390I CCNGG 3 cut(s) 1057, 1320, 1483
Bme18I GGWCC 3 cut(s) 925, 1439, 1456
BmgBI CACGTC 1 cut(s) 1271
BmgT120I GGNCC 4 cut(s) 925, 1097, 1439, 1456
BmiI GGNNCC 1 cut(s) 1422
BmrFI CCNGG 3 cut(s) 1057, 1320, 1483
BmsI GCATC 4 cut(s) 418, 498, 1100, 1357
Bpu10I CCTNAGC 1 cut(s) 515
BpuEI CTTGAG 2 cut(s) 216, 827
BsaBI GATNNNNATC 1 cut(s) 147
BsaI GGTCTC 1 cut(s) 597
BsaJI CCNNGG 6 cut(s) 223, 363, 544, 904, 1319, 1481
BsaXI ACNNNNNCTCC 1 cut(s) 1487
Bsc4I CCNNNNNNNGG 2 cut(s) 948, 1482
Bse1I ACTGG 4 cut(s) 877, 935, 1100, 1380
Bse3DI GCAATG 2 cut(s) 155, 1086
Bse8I GATNNNNATC 1 cut(s) 147
BseBI CCWGG 3 cut(s) 1057, 1320, 1483
BseDI CCNNGG 6 cut(s) 223, 363, 544, 904, 1319, 1481
BseGI GGATG 2 cut(s) 1033, 1052
BseJI GATNNNNATC 1 cut(s) 147
BseLI CCNNNNNNNGG 2 cut(s) 948, 1482
BseMI GCAATG 2 cut(s) 155, 1086
BseMII CTCAG 3 cut(s) 237, 506, 905
BseNI ACTGG 4 cut(s) 877, 935, 1100, 1380
BseRI GAGGAG 2 cut(s) 171, 532
BseSI GKGCMC 1 cut(s) 1425
BseXI GCAGC 4 cut(s) 433, 454, 523, 1096
BsgI GTGCAG 1 cut(s) 461
BshFI GGCC 6 cut(s) 222, 487, 726, 814, 1005, 1099
BshNI GGYRCC 1 cut(s) 1420
BsiHKAI GWGCWC 1 cut(s) 1311
BslFI GGGAC 1 cut(s) 395
BslI CCNNNNNNNGG 2 cut(s) 948, 1482
BsmAI GTCTC 7 cut(s) 242, 266, 286, 597, 943, 1261, 1388
BsmBI CGTCTC 2 cut(s) 1261, 1388
BsmFI GGGAC 1 cut(s) 395
BsmI GAATGC 4 cut(s) 535, 606, 1093, 1356
BsnI GGCC 6 cut(s) 222, 487, 726, 814, 1005, 1099
Bso31I GGTCTC 1 cut(s) 597
Bsp1286I GDGCHC 2 cut(s) 1311, 1425
Bsp1407I TGTACA 1 cut(s) 462
Bsp143I GATC 4 cut(s) 196, 372, 1035, 1294
Bsp19I CCATGG 1 cut(s) 904
BspACI CCGC 8 cut(s) 133, 176, 541, 589, 811, 968, 1354, 1471
BspANI GGCC 6 cut(s) 222, 487, 726, 814, 1005, 1099
BspCNI CTCAG 3 cut(s) 238, 507, 904
BspLI GGNNCC 1 cut(s) 1422
BspPI GGATC 3 cut(s) 191, 1030, 1289
BspQI GCTCTTC 1 cut(s) 18
BspT107I GGYRCC 1 cut(s) 1420
BspTNI GGTCTC 1 cut(s) 597
BsrBI CCGCTC 1 cut(s) 811
BsrDI GCAATG 2 cut(s) 155, 1086
BsrGI TGTACA 1 cut(s) 462
BsrI ACTGG 4 cut(s) 877, 935, 1100, 1380
BssECI CCNNGG 6 cut(s) 223, 363, 544, 904, 1319, 1481
BssMI GATC 4 cut(s) 196, 372, 1035, 1294
BssT1I CCWWGG 3 cut(s) 363, 544, 904
Bst2UI CCWGG 3 cut(s) 1057, 1320, 1483
Bst4CI ACNGT 3 cut(s) 386, 914, 1313
Bst6I CTCTTC 3 cut(s) 18, 690, 698
BstAUI TGTACA 1 cut(s) 462
BstC8I GCNNGC 3 cut(s) 176, 816, 1160
BstDEI CTNAG 4 cut(s) 211, 246, 515, 891
BstDSI CCRYGG 1 cut(s) 904
BstF5I GGATG 2 cut(s) 1033, 1052
BstH2I RGCGCY 1 cut(s) 556
BstHHI GCGC 1 cut(s) 555
BstKTI GATC 4 cut(s) 199, 375, 1038, 1297
BstMAI GTCTC 7 cut(s) 242, 266, 286, 597, 943, 1261, 1388
BstMBI GATC 4 cut(s) 196, 372, 1035, 1294
BstMWI GCNNNNNNNGC 2 cut(s) 610, 811
BstNI CCWGG 3 cut(s) 1057, 1320, 1483
BstNSI RCATGY 3 cut(s) 463, 469, 1251
BstSCI CCNGG 3 cut(s) 1055, 1318, 1481
BstSFI CTRYAG 1 cut(s) 616
BstSLI GKGCMC 1 cut(s) 1425
BstV1I GCAGC 4 cut(s) 433, 454, 523, 1096
BstX2I RGATCY 2 cut(s) 1035, 1294
BstYI RGATCY 2 cut(s) 1035, 1294
BsuRI GGCC 6 cut(s) 222, 487, 726, 814, 1005, 1099
BtgI CCRYGG 1 cut(s) 904
BtrI CACGTC 1 cut(s) 1271
BtsCI GGATG 2 cut(s) 1033, 1052
BtsIMutI CAGTG 2 cut(s) 919, 1309
Cac8I GCNNGC 3 cut(s) 176, 816, 1160
CfoI GCGC 1 cut(s) 555
Cfr13I GGNCC 4 cut(s) 925, 1097, 1439, 1456
Csp6I GTAC 4 cut(s) 403, 463, 870, 1242
CviQI GTAC 4 cut(s) 403, 463, 870, 1242
DdeI CTNAG 4 cut(s) 211, 246, 515, 891
DpnI GATC 4 cut(s) 198, 374, 1037, 1296
DpnII GATC 4 cut(s) 196, 372, 1035, 1294
EaeI YGGCCR 1 cut(s) 1003
Eam1104I CTCTTC 3 cut(s) 18, 690, 698
EarI CTCTTC 3 cut(s) 18, 690, 698
EciI GGCGGA 1 cut(s) 1460
Eco130I CCWWGG 3 cut(s) 363, 544, 904
Eco147I AGGCCT 2 cut(s) 222, 487
Eco31I GGTCTC 1 cut(s) 597
Eco32I GATATC 1 cut(s) 1230
Eco47I GGWCC 3 cut(s) 925, 1439, 1456
EcoRI GAATTC 1 cut(s) 37
EcoRII CCWGG 3 cut(s) 1055, 1318, 1481
EcoRV GATATC 1 cut(s) 1230
EcoT14I CCWWGG 3 cut(s) 363, 544, 904
EcoT22I ATGCAT 2 cut(s) 499, 1093
ErhI CCWWGG 3 cut(s) 363, 544, 904
Esp3I CGTCTC 2 cut(s) 1261, 1388
FalI AAGNNNNNCTT 2 cut(s) 947, 979
FaqI GGGAC 1 cut(s) 395
FauI CCCGC 4 cut(s) 140, 183, 548, 1361
FblI GTMKAC 1 cut(s) 53
Fnu4HI GCNGC 5 cut(s) 422, 443, 512, 812, 1110
FokI GGATG 2 cut(s) 1039, 1040
Fsp4HI GCNGC 5 cut(s) 422, 443, 512, 812, 1110
FspBI CTAG 1 cut(s) 425
GlaI GCGC 1 cut(s) 554
GluI GCNGC 5 cut(s) 422, 443, 512, 812, 1110
HaeII RGCGCY 1 cut(s) 556
HaeIII GGCC 6 cut(s) 222, 487, 726, 814, 1005, 1099
HhaI GCGC 1 cut(s) 555
Hin6I GCGC 1 cut(s) 553
HinP1I GCGC 1 cut(s) 553
HincII GTYRAC 2 cut(s) 888, 1506
HindII GTYRAC 2 cut(s) 888, 1506
HinfI GANTC 6 cut(s) 71, 112, 294, 790, 1049, 1434
HphI GGTGA 2 cut(s) 839, 924
Hpy166II GTNNAC 7 cut(s) 54, 574, 711, 736, 888, 995, 1506
Hpy188I TCNGA 4 cut(s) 117, 166, 901, 1439
Hpy188III TCNNGA 6 cut(s) 34, 140, 380, 686, 794, 1361
Hpy8I GTNNAC 7 cut(s) 54, 574, 711, 736, 888, 995, 1506
HpyAV CCTTC 3 cut(s) 568, 949, 1130
HpyCH4III ACNGT 3 cut(s) 386, 914, 1313
HpyCH4IV ACGT 2 cut(s) 216, 1270
HpyCH4V TGCA 8 cut(s) 285, 421, 442, 497, 511, 604, 1091, 1112
HpyF10VI GCNNNNNNNGC 2 cut(s) 610, 811
HpyF3I CTNAG 4 cut(s) 211, 246, 515, 891
HpySE526I ACGT 2 cut(s) 216, 1270
HspAI GCGC 1 cut(s) 553
Kzo9I GATC 4 cut(s) 196, 372, 1035, 1294
LguI GCTCTTC 1 cut(s) 18
LmnI GCTCC 1 cut(s) 1495
Lsp1109I GCAGC 4 cut(s) 433, 454, 523, 1096
LweI GCATC 4 cut(s) 418, 498, 1100, 1357
MaeI CTAG 1 cut(s) 425
MaeII ACGT 2 cut(s) 216, 1270
MaeIII GTNAC 5 cut(s) 203, 521, 930, 1102, 1189
MalI GATC 4 cut(s) 198, 374, 1037, 1296
MbiI CCGCTC 1 cut(s) 811
MboI GATC 4 cut(s) 196, 372, 1035, 1294
MboII GAAGA 8 cut(s) 5, 517, 707, 715, 964, 1096, 1376, 1457
MfeI CAATTG 1 cut(s) 750
MflI RGATCY 2 cut(s) 1035, 1294
MhlI GDGCHC 2 cut(s) 1311, 1425
MlsI TGGCCA 1 cut(s) 1005
MluNI TGGCCA 1 cut(s) 1005
MlyI GAGTC 3 cut(s) 288, 1058, 1443
MmeI TCCRAC 2 cut(s) 78, 1417
Mox20I TGGCCA 1 cut(s) 1005
Mph1103I ATGCAT 2 cut(s) 499, 1093
MroXI GAANNNNTTC 2 cut(s) 12, 963
MscI TGGCCA 1 cut(s) 1005
MseI TTAA 5 cut(s) 147, 1062, 1185, 1263, 1284
MslI CAYNNNNRTG 3 cut(s) 464, 975, 1044
Msp20I TGGCCA 1 cut(s) 1005
MspA1I CMGCKG 2 cut(s) 514, 1109
MspR9I CCNGG 3 cut(s) 1057, 1320, 1483
MunI CAATTG 1 cut(s) 750
Mva1269I GAATGC 4 cut(s) 535, 606, 1093, 1356
MvaI CCWGG 3 cut(s) 1057, 1320, 1483
MwoI GCNNNNNNNGC 2 cut(s) 610, 811
NcoI CCATGG 1 cut(s) 904
NdeII GATC 4 cut(s) 196, 372, 1035, 1294
NlaIV GGNNCC 1 cut(s) 1422
NmeAIII GCCGAG 1 cut(s) 752
NmuCI GTSAC 2 cut(s) 203, 930
NsiI ATGCAT 2 cut(s) 499, 1093
NspI RCATGY 3 cut(s) 463, 469, 1251
PceI AGGCCT 2 cut(s) 222, 487
PciI ACATGT 2 cut(s) 459, 465
PciSI GCTCTTC 1 cut(s) 18
PctI GAATGC 4 cut(s) 535, 606, 1093, 1356
PdmI GAANNNNTTC 2 cut(s) 12, 963
PfeI GAWTC 3 cut(s) 71, 112, 790
PkrI GCNGC 5 cut(s) 423, 444, 513, 813, 1111
PleI GAGTC 3 cut(s) 288, 1057, 1442
PpsI GAGTC 3 cut(s) 288, 1057, 1442
PscI ACATGT 2 cut(s) 459, 465
PshBI ATTAAT 1 cut(s) 147
Psp6I CCWGG 3 cut(s) 1055, 1318, 1481
PspGI CCWGG 3 cut(s) 1055, 1318, 1481
PspN4I GGNNCC 1 cut(s) 1422
PspPI GGNCC 4 cut(s) 925, 1097, 1439, 1456
PsuI RGATCY 2 cut(s) 1035, 1294
PvuII CAGCTG 2 cut(s) 514, 1109
RsaI GTAC 4 cut(s) 404, 464, 871, 1243
RsaNI GTAC 4 cut(s) 403, 463, 870, 1242
RseI CAYNNNNRTG 3 cut(s) 464, 975, 1044
SapI GCTCTTC 1 cut(s) 18
SaqAI TTAA 5 cut(s) 147, 1062, 1185, 1263, 1284
SatI GCNGC 5 cut(s) 422, 443, 512, 812, 1110
Sau3AI GATC 4 cut(s) 196, 372, 1035, 1294
Sau96I GGNCC 4 cut(s) 925, 1097, 1439, 1456
SchI GAGTC 3 cut(s) 288, 1058, 1443
ScrFI CCNGG 3 cut(s) 1057, 1320, 1483
SduI GDGCHC 2 cut(s) 1311, 1425
SfaNI GCATC 4 cut(s) 418, 498, 1100, 1357
SfcI CTRYAG 1 cut(s) 616
SinI GGWCC 3 cut(s) 925, 1439, 1456
SmiMI CAYNNNNRTG 3 cut(s) 464, 975, 1044
SmlI CTYRAG 2 cut(s) 231, 806
SmoI CTYRAG 2 cut(s) 231, 806
SseBI AGGCCT 2 cut(s) 222, 487
SsiI CCGC 8 cut(s) 133, 176, 541, 589, 811, 968, 1354, 1471
SspMI CTAG 1 cut(s) 425
StuI AGGCCT 2 cut(s) 222, 487
StyD4I CCNGG 3 cut(s) 1055, 1318, 1481
StyI CCWWGG 3 cut(s) 363, 544, 904
TaaI ACNGT 3 cut(s) 386, 914, 1313
TaiI ACGT 2 cut(s) 219, 1273
TaqI TCGA 8 cut(s) 33, 65, 297, 598, 629, 864, 1410, 1432
TatI WGTACW 2 cut(s) 462, 1241
TauI GCSGC 1 cut(s) 814
TfiI GAWTC 3 cut(s) 71, 112, 790
Tru1I TTAA 5 cut(s) 147, 1062, 1185, 1263, 1284
Tru9I TTAA 5 cut(s) 147, 1062, 1185, 1263, 1284
TscAI CASTG 2 cut(s) 919, 1316
TseFI GTSAC 2 cut(s) 203, 930
TseI GCWGC 4 cut(s) 421, 442, 511, 1109
Tsp45I GTSAC 2 cut(s) 203, 930
TspDTI ATGAA 8 cut(s) 112, 125, 542, 635, 993, 1097, 1149, 1249
TspGWI ACGGA 1 cut(s) 1448
TspRI CASTG 2 cut(s) 919, 1316
VpaK11BI GGWCC 3 cut(s) 925, 1439, 1456
VspI ATTAAT 1 cut(s) 147
XapI RAATTY 5 cut(s) 37, 797, 841, 880, 1325
XceI RCATGY 3 cut(s) 463, 469, 1251
XmiI GTMKAC 1 cut(s) 53
XmnI GAANNNNTTC 2 cut(s) 12, 963
XspI CTAG 1 cut(s) 425
Zsp2I ATGCAT 2 cut(s) 499, 1093
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.