AT3G13175

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0017095
Physical Location & Seq
Reverse (-)
4235075 .. 4235814
740 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G13175.1

Sequence Viewer

Length: 321 bp
ATGGAGTTCCGGGAGAAGCTTTTGAAGTTCAAGTTGCAAATCGTGTTTGCCTTTGTTTTATCTCTCCTCACCGTAGCTCTCGTCGCTTATTCTCCCGGTTTCCTCACCGTTCTATCTTACTTCTGGCCACTTTTTCTCTCCACGGCTCTCTTTCTCGCTGCCGTTTTCTTCTTCGCACGCACCTCCGATCTCCCGGTTTCGTCTACCATCATCCCAGGCGAAGGCGCAGGCTTAAAAGTGGCGGCGGAAGGGATTCTTGACTATGTCGTCGGCGGACAACACGAAGACATTCTCTTTGATAGCTTCACCAAACTTGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.7

Weight (kDa)

4.94

Isoelectric Point (pI)

21.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017095)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13175
fragaria_vesca FvH4_3g29390
malus_domestica MD03G1183900.v1.1 MD11G1200800.v1.1
prunus_persica Prupe.4G242100_v2.0.a1
pyrus_communis pycom11g17320
rosa_chinensis RchiOBHm_Chr5g0053811
rosa_laevigata RLG00000034903
rosa_multiflora Rmu_sc0001759.1_g000011
rosa_roxburghii Rroxscaffold_1G00026790
rosa_rugosa Rorug05G0282800
rosa_samantha Rh5DG379700
rosa_wichuraiana Rw0G009580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 266
AccI GTMKAC 1 cut(s) 203
AciI CCGC 3 cut(s) 242, 245, 273
AcoI YGGCCR 1 cut(s) 125
AfiI CCNNNNNNNGG 1 cut(s) 221
AgsI TTSAA 2 cut(s) 25, 31
AjnI CCWGG 1 cut(s) 214
AluBI AGCT 3 cut(s) 19, 77, 303
AluI AGCT 3 cut(s) 19, 77, 303
AoxI GGCC 1 cut(s) 125
ApeKI GCWGC 1 cut(s) 158
ArsI GACNNNNNNTTYG 2 cut(s) 278, 310
Asp700I GAANNNNTTC 2 cut(s) 252, 288
AspLEI GCGC 1 cut(s) 227
AsuC2I CCSGG 3 cut(s) 11, 96, 194
AsuHPI GGTGA 3 cut(s) 61, 97, 298
BalI TGGCCA 1 cut(s) 127
BbsI GAAGAC 1 cut(s) 291
BbvI GCAGC 1 cut(s) 145
BccI CCATC 1 cut(s) 215
BceAI ACGGC 2 cut(s) 146, 159
BciT130I CCWGG 1 cut(s) 216
BcnI CCSGG 3 cut(s) 11, 96, 194
BisI GCNGC 2 cut(s) 159, 243
BlsI GCNGC 2 cut(s) 160, 244
Bme1390I CCNGG 4 cut(s) 11, 96, 194, 216
BmrFI CCNGG 4 cut(s) 11, 96, 194, 216
BpiI GAAGAC 1 cut(s) 291
BpuMI CCSGG 3 cut(s) 11, 96, 194
BsaJI CCNNGG 2 cut(s) 141, 214
Bsc4I CCNNNNNNNGG 1 cut(s) 221
BseBI CCWGG 1 cut(s) 216
BseDI CCNNGG 2 cut(s) 141, 214
BseGI GGATG 1 cut(s) 210
BseLI CCNNNNNNNGG 1 cut(s) 221
BseRI GAGGAG 1 cut(s) 56
BseXI GCAGC 1 cut(s) 145
BshFI GGCC 1 cut(s) 127
BsiSI CCGG 3 cut(s) 10, 96, 194
BslI CCNNNNNNNGG 1 cut(s) 221
BsnI GGCC 1 cut(s) 127
Bsp143I GATC 1 cut(s) 187
BspACI CCGC 3 cut(s) 242, 245, 273
BspANI GGCC 1 cut(s) 127
BssECI CCNNGG 2 cut(s) 141, 214
BssMI GATC 1 cut(s) 187
Bst2UI CCWGG 1 cut(s) 216
Bst4CI ACNGT 2 cut(s) 73, 109
BstC8I GCNNGC 2 cut(s) 178, 229
BstDSI CCRYGG 1 cut(s) 141
BstF5I GGATG 1 cut(s) 210
BstHHI GCGC 1 cut(s) 227
BstKTI GATC 1 cut(s) 190
BstMBI GATC 1 cut(s) 187
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstNI CCWGG 1 cut(s) 216
BstSCI CCNGG 4 cut(s) 9, 94, 192, 214
BstV1I GCAGC 1 cut(s) 145
BstV2I GAAGAC 1 cut(s) 291
BsuRI GGCC 1 cut(s) 127
BtgI CCRYGG 1 cut(s) 141
BtsCI GGATG 1 cut(s) 210
Cac8I GCNNGC 2 cut(s) 178, 229
CfoI GCGC 1 cut(s) 227
CviJI RGCY 6 cut(s) 19, 77, 127, 146, 231, 303
CviKI_1 RGCY 6 cut(s) 19, 77, 127, 146, 231, 303
DpnI GATC 1 cut(s) 189
DpnII GATC 1 cut(s) 187
DrdI GACNNNNNNGTC 1 cut(s) 266
DseDI GACNNNNNNGTC 1 cut(s) 266
EaeI YGGCCR 1 cut(s) 125
EciI GGCGGA 2 cut(s) 260, 288
EcoRII CCWGG 1 cut(s) 214
FaiI YATR 1 cut(s) 264
FalI AAGNNNNNCTT 2 cut(s) 240, 272
FblI GTMKAC 1 cut(s) 203
Fnu4HI GCNGC 2 cut(s) 159, 243
FokI GGATG 1 cut(s) 197
Fsp4HI GCNGC 2 cut(s) 159, 243
GlaI GCGC 1 cut(s) 226
GluI GCNGC 2 cut(s) 159, 243
HaeIII GGCC 1 cut(s) 127
HapII CCGG 3 cut(s) 10, 96, 194
HhaI GCGC 1 cut(s) 227
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 1 cut(s) 253
HpaII CCGG 3 cut(s) 10, 96, 194
HphI GGTGA 3 cut(s) 61, 97, 298
Hpy166II GTNNAC 1 cut(s) 204
Hpy188I TCNGA 1 cut(s) 187
Hpy188III TCNNGA 1 cut(s) 257
Hpy8I GTNNAC 1 cut(s) 204
Hpy99I CGWCG 2 cut(s) 86, 272
HpyAV CCTTC 2 cut(s) 215, 242
HpyCH4III ACNGT 2 cut(s) 73, 109
HpyCH4V TGCA 1 cut(s) 37
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
HspAI GCGC 1 cut(s) 225
Kzo9I GATC 1 cut(s) 187
LpnPI CCDG 7 cut(s) 23, 109, 109, 201, 207, 213, 228
Lsp1109I GCAGC 1 cut(s) 145
MalI GATC 1 cut(s) 189
MboI GATC 1 cut(s) 187
MboII GAAGA 3 cut(s) 160, 163, 296
MlsI TGGCCA 1 cut(s) 127
MluNI TGGCCA 1 cut(s) 127
MnlI CCTC 3 cut(s) 77, 113, 193
Mox20I TGGCCA 1 cut(s) 127
MroXI GAANNNNTTC 2 cut(s) 252, 288
MscI TGGCCA 1 cut(s) 127
MseI TTAA 1 cut(s) 233
Msp20I TGGCCA 1 cut(s) 127
MspI CCGG 3 cut(s) 10, 96, 194
MspR9I CCNGG 4 cut(s) 11, 96, 194, 216
MvaI CCWGG 1 cut(s) 216
MwoI GCNNNNNNNGC 1 cut(s) 83
NciI CCSGG 3 cut(s) 11, 96, 194
NdeII GATC 1 cut(s) 187
PdmI GAANNNNTTC 2 cut(s) 252, 288
PfeI GAWTC 1 cut(s) 253
PflFI GACNNNGTC 1 cut(s) 263
PfoI TCCNGGA 1 cut(s) 9
PkrI GCNGC 2 cut(s) 160, 244
Psp6I CCWGG 1 cut(s) 214
PspGI CCWGG 1 cut(s) 214
PsyI GACNNNGTC 1 cut(s) 263
SaqAI TTAA 1 cut(s) 233
SatI GCNGC 2 cut(s) 159, 243
Sau3AI GATC 1 cut(s) 187
ScrFI CCNGG 4 cut(s) 11, 96, 194, 216
SetI ASST 4 cut(s) 21, 79, 185, 305
SsiI CCGC 3 cut(s) 242, 245, 273
StyD4I CCNGG 4 cut(s) 9, 94, 192, 214
TaaI ACNGT 2 cut(s) 73, 109
TauI GCSGC 1 cut(s) 245
TfiI GAWTC 1 cut(s) 253
Tru1I TTAA 1 cut(s) 233
Tru9I TTAA 1 cut(s) 233
TseI GCWGC 1 cut(s) 158
Tth111I GACNNNGTC 1 cut(s) 263
XmiI GTMKAC 1 cut(s) 203
XmnI GAANNNNTTC 2 cut(s) 252, 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.