Rw0G009580

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00372
OG0017095
Physical Location & Seq
Reverse (-)
37673 .. 38240
568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G009580.1

Sequence Viewer

Length: 375 bp
ATGGAGATCCCAGAAAAGCTCCTCAAGTTCAAGTACCACTTTCTCTGTGCACTCATTTTTTGCCTCACCCTTTACTCCCTAGCCCTCTTTGCGCCAAGATTTCTAACCATCCTGGCCTACTTTTGGCCTCTCTTCCTCTCCACTGCTCTCTTCCTCTTTGCCGTCGTCGTCTTCGGGAAGACCTCGTTACCGGGCACCGATGCTCATGCAGCTGACAAAGCCGGCGAAGGCCTCCTCGATTATGTAGCCGGCCAACCGGACACACCGTCGTGGAAAGTTACCCTTCTGAAATGTAATGTAATTTTTGTAGCTGTAATTTCTAACTTGTGTTGTTCAACATCGATCCCTGTGAACTGTGATCTCCGGGAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.77

Weight (kDa)

6.07

Isoelectric Point (pI)

17.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017095)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13175
fragaria_vesca FvH4_3g29390
malus_domestica MD03G1183900.v1.1 MD11G1200800.v1.1
prunus_persica Prupe.4G242100_v2.0.a1
pyrus_communis pycom11g17320
rosa_chinensis RchiOBHm_Chr5g0053811
rosa_laevigata RLG00000034903
rosa_multiflora Rmu_sc0001759.1_g000011
rosa_roxburghii Rroxscaffold_1G00026790
rosa_rugosa Rorug05G0282800
rosa_samantha Rh5DG379700
rosa_wichuraiana Rw0G009580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 194
AclWI GGATC 1 cut(s) 337
AcoI YGGCCR 1 cut(s) 250
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 1 cut(s) 123
AgsI TTSAA 2 cut(s) 31, 336
AhdI GACNNNNNGTC 1 cut(s) 265
AjnI CCWGG 1 cut(s) 111
AleI CACNNNNGTG 1 cut(s) 268
AluBI AGCT 3 cut(s) 19, 212, 311
AluI AGCT 3 cut(s) 19, 212, 311
Alw21I GWGCWC 1 cut(s) 52
Alw44I GTGCAC 1 cut(s) 48
AlwI GGATC 1 cut(s) 337
AoxI GGCC 4 cut(s) 114, 125, 229, 250
ApaLI GTGCAC 1 cut(s) 48
ApeKI GCWGC 1 cut(s) 209
AspLEI GCGC 1 cut(s) 94
AsuC2I CCSGG 2 cut(s) 192, 365
AsuHPI GGTGA 1 cut(s) 58
BaeGI GKGCMC 2 cut(s) 52, 197
BanI GGYRCC 1 cut(s) 194
BbsI GAAGAC 2 cut(s) 163, 185
Bbv12I GWGCWC 1 cut(s) 52
BbvI GCAGC 1 cut(s) 221
BccI CCATC 1 cut(s) 116
BceAI ACGGC 1 cut(s) 146
BcgI CGANNNNNNTGC 2 cut(s) 188, 222
BciT130I CCWGG 1 cut(s) 113
BcnI CCSGG 2 cut(s) 192, 365
BfaI CTAG 1 cut(s) 80
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
Bme1390I CCNGG 3 cut(s) 113, 192, 365
BmeRI GACNNNNNGTC 1 cut(s) 265
BmiI GGNNCC 1 cut(s) 196
BmrFI CCNGG 3 cut(s) 113, 192, 365
BmsI GCATC 1 cut(s) 190
BpiI GAAGAC 2 cut(s) 163, 185
BpuEI CTTGAG 1 cut(s) 8
BpuMI CCSGG 2 cut(s) 192, 365
Bsa29I ATCGAT 1 cut(s) 341
BsaWI WCCGGW 1 cut(s) 256
Bsc4I CCNNNNNNNGG 1 cut(s) 123
Bse118I RCCGGY 2 cut(s) 221, 248
BseBI CCWGG 1 cut(s) 113
BseCI ATCGAT 1 cut(s) 341
BseGI GGATG 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 123
BseRI GAGGAG 2 cut(s) 11, 224
BseSI GKGCMC 2 cut(s) 52, 197
BseXI GCAGC 1 cut(s) 221
BshFI GGCC 4 cut(s) 116, 127, 231, 252
BshNI GGYRCC 1 cut(s) 194
BshVI ATCGAT 1 cut(s) 341
BsiHKAI GWGCWC 1 cut(s) 52
BsiSI CCGG 5 cut(s) 191, 222, 249, 257, 364
BslI CCNNNNNNNGG 1 cut(s) 123
BsnI GGCC 4 cut(s) 116, 127, 231, 252
Bsp1286I GDGCHC 2 cut(s) 52, 197
Bsp143I GATC 3 cut(s) 6, 342, 358
BspANI GGCC 4 cut(s) 116, 127, 231, 252
BspDI ATCGAT 1 cut(s) 341
BspLI GGNNCC 1 cut(s) 196
BspPI GGATC 1 cut(s) 337
BspT107I GGYRCC 1 cut(s) 194
BsrFI RCCGGY 2 cut(s) 221, 248
BssAI RCCGGY 2 cut(s) 221, 248
BssMI GATC 3 cut(s) 6, 342, 358
Bst2UI CCWGG 1 cut(s) 113
Bst4CI ACNGT 2 cut(s) 267, 356
Bst6I CTCTTC 2 cut(s) 137, 155
BstC8I GCNNGC 2 cut(s) 223, 250
BstF5I GGATG 1 cut(s) 108
BstHHI GCGC 1 cut(s) 94
BstKTI GATC 3 cut(s) 9, 345, 361
BstMBI GATC 3 cut(s) 6, 342, 358
BstMWI GCNNNNNNNGC 3 cut(s) 89, 209, 218
BstNI CCWGG 1 cut(s) 113
BstSCI CCNGG 3 cut(s) 111, 190, 363
BstSLI GKGCMC 2 cut(s) 52, 197
BstV1I GCAGC 1 cut(s) 221
BstV2I GAAGAC 2 cut(s) 163, 185
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
Bsu15I ATCGAT 1 cut(s) 341
BsuRI GGCC 4 cut(s) 116, 127, 231, 252
BsuTUI ATCGAT 1 cut(s) 341
BtsCI GGATG 1 cut(s) 108
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 141
Cac8I GCNNGC 2 cut(s) 223, 250
CfoI GCGC 1 cut(s) 94
Cfr10I RCCGGY 2 cut(s) 221, 248
ClaI ATCGAT 1 cut(s) 341
Csp6I GTAC 1 cut(s) 34
CviAII CATG 1 cut(s) 206
CviQI GTAC 1 cut(s) 34
DpnI GATC 3 cut(s) 8, 344, 360
DpnII GATC 3 cut(s) 6, 342, 358
DriI GACNNNNNGTC 1 cut(s) 265
EaeI YGGCCR 1 cut(s) 250
Eam1104I CTCTTC 2 cut(s) 137, 155
Eam1105I GACNNNNNGTC 1 cut(s) 265
EarI CTCTTC 2 cut(s) 137, 155
Eco147I AGGCCT 1 cut(s) 231
EcoRII CCWGG 1 cut(s) 111
FaeI CATG 1 cut(s) 209
FaiI YATR 2 cut(s) 207, 243
FalI AAGNNNNNCTT 4 cut(s) 23, 55, 267, 299
FatI CATG 1 cut(s) 205
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 1 cut(s) 95
Fsp4HI GCNGC 1 cut(s) 210
FspBI CTAG 1 cut(s) 80
GlaI GCGC 1 cut(s) 93
GluI GCNGC 1 cut(s) 210
HaeIII GGCC 4 cut(s) 116, 127, 231, 252
HapII CCGG 5 cut(s) 191, 222, 249, 257, 364
HhaI GCGC 1 cut(s) 94
Hin1II CATG 1 cut(s) 209
Hin6I GCGC 1 cut(s) 92
HinP1I GCGC 1 cut(s) 92
HpaII CCGG 5 cut(s) 191, 222, 249, 257, 364
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 2 cut(s) 50, 352
Hpy188I TCNGA 1 cut(s) 288
Hpy188III TCNNGA 1 cut(s) 175
Hpy8I GTNNAC 2 cut(s) 50, 352
Hpy99I CGWCG 3 cut(s) 167, 170, 271
HpyAV CCTTC 2 cut(s) 221, 293
HpyCH4III ACNGT 2 cut(s) 267, 356
HpyCH4V TGCA 2 cut(s) 50, 209
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 209, 218
Hsp92II CATG 1 cut(s) 209
HspAI GCGC 1 cut(s) 92
KroI GCCGGC 2 cut(s) 221, 248
KroNI GCCGGC 2 cut(s) 223, 250
Kzo9I GATC 3 cut(s) 6, 342, 358
LmnI GCTCC 1 cut(s) 24
LpnPI CCDG 8 cut(s) 24, 98, 125, 204, 235, 262, 270, 360
Lsp1109I GCAGC 1 cut(s) 221
LweI GCATC 1 cut(s) 190
MaeI CTAG 1 cut(s) 80
MaeIII GTNAC 2 cut(s) 186, 277
MalI GATC 3 cut(s) 8, 344, 360
MboI GATC 3 cut(s) 6, 342, 358
MboII GAAGA 4 cut(s) 124, 142, 163, 190
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 2 cut(s) 52, 197
MluCI AATT 2 cut(s) 300, 315
MnlI CCTC 9 cut(s) 32, 74, 95, 138, 146, 164, 193, 242, 245
MroNI GCCGGC 2 cut(s) 221, 248
MslI CAYNNNNRTG 1 cut(s) 268
MspA1I CMGCKG 1 cut(s) 212
MspI CCGG 5 cut(s) 191, 222, 249, 257, 364
MspR9I CCNGG 3 cut(s) 113, 192, 365
MvaI CCWGG 1 cut(s) 113
MwoI GCNNNNNNNGC 3 cut(s) 89, 209, 218
NaeI GCCGGC 2 cut(s) 223, 250
NciI CCSGG 2 cut(s) 192, 365
NdeII GATC 3 cut(s) 6, 342, 358
NgoMIV GCCGGC 2 cut(s) 221, 248
NlaIII CATG 1 cut(s) 209
NlaIV GGNNCC 1 cut(s) 196
OliI CACNNNNGTG 1 cut(s) 268
PceI AGGCCT 1 cut(s) 231
PdiI GCCGGC 2 cut(s) 223, 250
PfoI TCCNGGA 1 cut(s) 363
PkrI GCNGC 1 cut(s) 211
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
PspN4I GGNNCC 1 cut(s) 196
PsuI RGATCY 1 cut(s) 6
PvuII CAGCTG 1 cut(s) 212
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
RseI CAYNNNNRTG 1 cut(s) 268
SatI GCNGC 1 cut(s) 210
Sau3AI GATC 3 cut(s) 6, 342, 358
ScrFI CCNGG 3 cut(s) 113, 192, 365
SduI GDGCHC 2 cut(s) 52, 197
SetI ASST 4 cut(s) 21, 185, 214, 313
SfaNI GCATC 1 cut(s) 190
SmiMI CAYNNNNRTG 1 cut(s) 268
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
Sse9I AATT 2 cut(s) 300, 315
SseBI AGGCCT 1 cut(s) 231
SspMI CTAG 1 cut(s) 80
StuI AGGCCT 1 cut(s) 231
StyD4I CCNGG 3 cut(s) 111, 190, 363
TaaI ACNGT 2 cut(s) 267, 356
TaqI TCGA 2 cut(s) 237, 341
TasI AATT 2 cut(s) 300, 315
TscAI CASTG 1 cut(s) 148
TseI GCWGC 1 cut(s) 209
TspRI CASTG 1 cut(s) 148
VneI GTGCAC 1 cut(s) 48
XspI CTAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.