Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0017095

Physical Location & Seq

Genomic Coordinates Reverse (-)

29003278 .. 29003610

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1200800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGAGATCCCAGAAAAGCTTGTCAAGTTCAAGTTCCACTTCCTCTTTGCACTCCTTTTCTGCTTTGCCCTTTACTCTCTAACCCTAATAGCTCCCGGATTTCTAACCCTTTTGGCCTACTTCTGGCCCCTCTTTCTCTCCACCGCGCTCTTCCTCTTCGCCGTCGTCATCTTCGGGAAGACCACGATACCGGCCTCCGACGCCTCCGGTGACAAACCCGGTGAAGGCCTCCTGGATTATGTAGCCGGGCAACCTGACCATGTCGTAGAAAGTTACAAATCCGAGTTGCCGCACAGCAGTAAAGTAGTTGAGGAGAAAGAACCAGAAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

111

Amino Acids

12.31

Weight (kDa)

5.02

Isoelectric Point (pI)

23.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0017095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13175
fragaria_vesca	FvH4_3g29390
malus_domestica	MD03G1183900.v1.1 MD11G1200800.v1.1
prunus_persica	Prupe.4G242100_v2.0.a1
pyrus_communis	pycom11g17320
rosa_chinensis	RchiOBHm_Chr5g0053811
rosa_laevigata	RLG00000034903
rosa_multiflora	Rmu_sc0001759.1_g000011
rosa_roxburghii	Rroxscaffold_1G00026790
rosa_rugosa	Rorug05G0282800
rosa_samantha	Rh5DG379700
rosa_wichuraiana	Rw0G009580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	146
AciI	CCGC	2 cut(s)	144, 290
AcyI	GRCGYC	1 cut(s)	201
AfiI	CCNNNNNNNGG	2 cut(s)	123, 224
AgsI	TTSAA	1 cut(s)	31
AjnI	CCWGG	1 cut(s)	231
AluBI	AGCT	2 cut(s)	19, 92
AluI	AGCT	2 cut(s)	19, 92
AoxI	GGCC	4 cut(s)	114, 125, 192, 226
AspLEI	GCGC	1 cut(s)	148
AspS9I	GGNCC	1 cut(s)	126
AsuC2I	CCSGG	3 cut(s)	96, 219, 247
AsuHPI	GGTGA	2 cut(s)	221, 233
BbsI	GAAGAC	1 cut(s)	185
BceAI	ACGGC	1 cut(s)	146
BciT130I	CCWGG	1 cut(s)	233
BcnI	CCSGG	3 cut(s)	96, 219, 247
BisI	GCNGC	1 cut(s)	290
BlsI	GCNGC	1 cut(s)	291
Bme1390I	CCNGG	4 cut(s)	96, 219, 233, 247
BmgT120I	GGNCC	1 cut(s)	126
BmiI	GGNNCC	1 cut(s)	128
BmrFI	CCNGG	4 cut(s)	96, 219, 233, 247
BpiI	GAAGAC	1 cut(s)	185
BpuMI	CCSGG	3 cut(s)	96, 219, 247
BsaHI	GRCGYC	1 cut(s)	201
BsaWI	WCCGGW	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	2 cut(s)	123, 224
Bse118I	RCCGGY	1 cut(s)	190
BseBI	CCWGG	1 cut(s)	233
BseLI	CCNNNNNNNGG	2 cut(s)	123, 224
BseRI	GAGGAG	1 cut(s)	326
Bsh1236I	CGCG	1 cut(s)	146
BshFI	GGCC	4 cut(s)	116, 127, 194, 228
BsiSI	CCGG	5 cut(s)	96, 191, 207, 219, 246
BslI	CCNNNNNNNGG	2 cut(s)	123, 224
BsnI	GGCC	4 cut(s)	116, 127, 194, 228
Bsp143I	GATC	1 cut(s)	6
BspACI	CCGC	2 cut(s)	144, 290
BspANI	GGCC	4 cut(s)	116, 127, 194, 228
BspFNI	CGCG	1 cut(s)	146
BspLI	GGNNCC	1 cut(s)	128
BspQI	GCTCTTC	1 cut(s)	155
BsrFI	RCCGGY	1 cut(s)	190
BssAI	RCCGGY	1 cut(s)	190
BssMI	GATC	1 cut(s)	6
BssNI	GRCGYC	1 cut(s)	201
Bst2UI	CCWGG	1 cut(s)	233
Bst6I	CTCTTC	2 cut(s)	155, 161
BstACI	GRCGYC	1 cut(s)	201
BstFNI	CGCG	1 cut(s)	146
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	1 cut(s)	9
BstMBI	GATC	1 cut(s)	6
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstNI	CCWGG	1 cut(s)	233
BstSCI	CCNGG	4 cut(s)	94, 217, 231, 245
BstUI	CGCG	1 cut(s)	146
BstV2I	GAAGAC	1 cut(s)	185
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
BsuRI	GGCC	4 cut(s)	116, 127, 194, 228
CfoI	GCGC	1 cut(s)	148
Cfr10I	RCCGGY	1 cut(s)	190
Cfr13I	GGNCC	1 cut(s)	126
CseI	GACGC	1 cut(s)	209
CviAII	CATG	1 cut(s)	260
CviJI	RGCY	7 cut(s)	19, 92, 116, 127, 194, 228, 245
CviKI_1	RGCY	7 cut(s)	19, 92, 116, 127, 194, 228, 245
DpnI	GATC	1 cut(s)	8
DpnII	GATC	1 cut(s)	6
Eam1104I	CTCTTC	2 cut(s)	155, 161
EarI	CTCTTC	2 cut(s)	155, 161
Eco147I	AGGCCT	1 cut(s)	228
EcoRII	CCWGG	1 cut(s)	231
FaeI	CATG	1 cut(s)	263
FaiI	YATR	2 cut(s)	240, 261
FalI	AAGNNNNNCTT	2 cut(s)	23, 55
FatI	CATG	1 cut(s)	259
Fnu4HI	GCNGC	1 cut(s)	290
Fsp4HI	GCNGC	1 cut(s)	290
GlaI	GCGC	1 cut(s)	147
GluI	GCNGC	1 cut(s)	290
HaeIII	GGCC	4 cut(s)	116, 127, 194, 228
HapII	CCGG	5 cut(s)	96, 191, 207, 219, 246
HgaI	GACGC	1 cut(s)	209
HhaI	GCGC	1 cut(s)	148
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	1 cut(s)	263
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HindIII	AAGCTT	1 cut(s)	17
HpaII	CCGG	5 cut(s)	96, 191, 207, 219, 246
HphI	GGTGA	2 cut(s)	221, 233
Hpy188I	TCNGA	2 cut(s)	199, 283
Hpy188III	TCNNGA	1 cut(s)	175
Hpy99I	CGWCG	2 cut(s)	167, 203
HpyAV	CCTTC	1 cut(s)	218
HpyCH4V	TGCA	1 cut(s)	50
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	1 cut(s)	263
HspAI	GCGC	1 cut(s)	146
Kzo9I	GATC	1 cut(s)	6
LguI	GCTCTTC	1 cut(s)	155
LmnI	GCTCC	1 cut(s)	97
MaeIII	GTNAC	2 cut(s)	209, 272
MalI	GATC	1 cut(s)	8
MboI	GATC	1 cut(s)	6
MboII	GAAGA	4 cut(s)	142, 148, 163, 190
MflI	RGATCY	1 cut(s)	6
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	7 cut(s)	53, 140, 164, 205, 214, 239, 304
MspI	CCGG	5 cut(s)	96, 191, 207, 219, 246
MspR9I	CCNGG	4 cut(s)	96, 219, 233, 247
MvaI	CCWGG	1 cut(s)	233
MvnI	CGCG	1 cut(s)	146
MwoI	GCNNNNNNNGC	1 cut(s)	200
NciI	CCSGG	3 cut(s)	96, 219, 247
NdeII	GATC	1 cut(s)	6
NlaIII	CATG	1 cut(s)	263
NlaIV	GGNNCC	1 cut(s)	128
NmuCI	GTSAC	1 cut(s)	209
PceI	AGGCCT	1 cut(s)	228
PciSI	GCTCTTC	1 cut(s)	155
PflFI	GACNNNGTC	1 cut(s)	260
PfoI	TCCNGGA	2 cut(s)	94, 231
PkrI	GCNGC	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	231
PspN4I	GGNNCC	1 cut(s)	128
PspPI	GGNCC	1 cut(s)	126
PsuI	RGATCY	1 cut(s)	6
PsyI	GACNNNGTC	1 cut(s)	260
SapI	GCTCTTC	1 cut(s)	155
SatI	GCNGC	1 cut(s)	290
Sau3AI	GATC	1 cut(s)	6
Sau96I	GGNCC	1 cut(s)	126
ScrFI	CCNGG	4 cut(s)	96, 219, 233, 247
SetI	ASST	3 cut(s)	21, 94, 256
SseBI	AGGCCT	1 cut(s)	228
SsiI	CCGC	2 cut(s)	144, 290
StuI	AGGCCT	1 cut(s)	228
StyD4I	CCNGG	4 cut(s)	94, 217, 231, 245
TauI	GCSGC	1 cut(s)	292
TseFI	GTSAC	1 cut(s)	209
Tsp45I	GTSAC	1 cut(s)	209
Tth111I	GACNNNGTC	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.