Rh5DG379700

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0017095
Physical Location & Seq
Forward (+)
57784974 .. 57786021
1048 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG379700.1

Sequence Viewer

Length: 429 bp
ATGTTTTTCGGACTTTTTCCCCACAGAGAATCCCTTCACATTAAAGAGATAAACCTCCCTCGATCCCCGTCTCTCTGTCCTCTCTCTCTCTCTCCCTCTCTAAAAACCTTCACTCTCATACTCTTCCTACTCATGGAGATCCCAGAAAAGCTCCTCAAGTTCAAGTACCACTTTCTCTGTGCACTCATTTTCTGCCTCACCCTTTACTCCCTAGCCCTCTTTGCGCCAAGATTTCTAACCATCCTGGCCTACTTTTGGCCTCTCTTCCTCTCCACTGCTCTCTTCCTGTTTGCCGTCGTCGTCTTCGGGAAGACCTCGTTACCGGGCACCGATGCTCATGCAGCTGACAAAGCCGGCGAAGGCCTCCTCGATTATGTAGCCGGCCAACCGGACCACACCGTCGTGGAAAGTTACCCTTCTGAAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.99

Weight (kDa)

6.49

Isoelectric Point (pI)

39.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017095)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13175
fragaria_vesca FvH4_3g29390
malus_domestica MD03G1183900.v1.1 MD11G1200800.v1.1
prunus_persica Prupe.4G242100_v2.0.a1
pyrus_communis pycom11g17320
rosa_chinensis RchiOBHm_Chr5g0053811
rosa_laevigata RLG00000034903
rosa_multiflora Rmu_sc0001759.1_g000011
rosa_roxburghii Rroxscaffold_1G00026790
rosa_rugosa Rorug05G0282800
rosa_samantha Rh5DG379700
rosa_wichuraiana Rw0G009580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 398
AccB1I GGYRCC 1 cut(s) 326
AclWI GGATC 2 cut(s) 57, 133
AcoI YGGCCR 1 cut(s) 382
AfaI GTAC 1 cut(s) 167
AfiI CCNNNNNNNGG 2 cut(s) 133, 255
AgsI TTSAA 1 cut(s) 163
AjnI CCWGG 1 cut(s) 243
AleI CACNNNNGTG 1 cut(s) 401
AluBI AGCT 2 cut(s) 151, 344
AluI AGCT 2 cut(s) 151, 344
Alw21I GWGCWC 1 cut(s) 184
Alw26I GTCTC 1 cut(s) 75
Alw44I GTGCAC 1 cut(s) 180
AlwI GGATC 2 cut(s) 57, 133
AoxI GGCC 4 cut(s) 246, 257, 361, 382
ApaLI GTGCAC 1 cut(s) 180
ApeKI GCWGC 1 cut(s) 341
Asp700I GAANNNNTTC 1 cut(s) 33
AspLEI GCGC 1 cut(s) 226
AspS9I GGNCC 1 cut(s) 391
AsuC2I CCSGG 1 cut(s) 324
AsuHPI GGTGA 1 cut(s) 190
AvaII GGWCC 1 cut(s) 391
BaeGI GKGCMC 2 cut(s) 184, 329
BanI GGYRCC 1 cut(s) 326
BbsI GAAGAC 2 cut(s) 295, 317
Bbv12I GWGCWC 1 cut(s) 184
BbvI GCAGC 1 cut(s) 353
BccI CCATC 1 cut(s) 248
BceAI ACGGC 1 cut(s) 278
BcgI CGANNNNNNTGC 2 cut(s) 320, 354
BciT130I CCWGG 1 cut(s) 245
BcnI CCSGG 1 cut(s) 324
BcoDI GTCTC 1 cut(s) 75
BfaI CTAG 1 cut(s) 212
BisI GCNGC 1 cut(s) 342
BlsI GCNGC 1 cut(s) 343
Bme1390I CCNGG 2 cut(s) 245, 324
Bme18I GGWCC 1 cut(s) 391
BmgT120I GGNCC 1 cut(s) 391
BmiI GGNNCC 1 cut(s) 328
BmrFI CCNGG 2 cut(s) 245, 324
BmsI GCATC 1 cut(s) 322
BpiI GAAGAC 2 cut(s) 295, 317
BpuEI CTTGAG 1 cut(s) 140
BpuMI CCSGG 1 cut(s) 324
BsaWI WCCGGW 1 cut(s) 388
Bsc4I CCNNNNNNNGG 2 cut(s) 133, 255
Bse118I RCCGGY 2 cut(s) 353, 380
BseBI CCWGG 1 cut(s) 245
BseGI GGATG 1 cut(s) 240
BseLI CCNNNNNNNGG 2 cut(s) 133, 255
BseRI GAGGAG 2 cut(s) 143, 356
BseSI GKGCMC 2 cut(s) 184, 329
BseXI GCAGC 1 cut(s) 353
BshFI GGCC 4 cut(s) 248, 259, 363, 384
BshNI GGYRCC 1 cut(s) 326
BsiHKAI GWGCWC 1 cut(s) 184
BsiSI CCGG 4 cut(s) 323, 354, 381, 389
BslI CCNNNNNNNGG 2 cut(s) 133, 255
BsmAI GTCTC 1 cut(s) 75
BsmBI CGTCTC 1 cut(s) 75
BsnI GGCC 4 cut(s) 248, 259, 363, 384
Bsp1286I GDGCHC 2 cut(s) 184, 329
Bsp143I GATC 2 cut(s) 62, 138
BspANI GGCC 4 cut(s) 248, 259, 363, 384
BspLI GGNNCC 1 cut(s) 328
BspPI GGATC 2 cut(s) 57, 133
BspT107I GGYRCC 1 cut(s) 326
BsrFI RCCGGY 2 cut(s) 353, 380
BssAI RCCGGY 2 cut(s) 353, 380
BssMI GATC 2 cut(s) 62, 138
Bst2UI CCWGG 1 cut(s) 245
Bst4CI ACNGT 1 cut(s) 400
Bst6I CTCTTC 3 cut(s) 128, 269, 287
BstC8I GCNNGC 2 cut(s) 355, 382
BstF5I GGATG 1 cut(s) 240
BstHHI GCGC 1 cut(s) 226
BstKTI GATC 2 cut(s) 65, 141
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 2 cut(s) 62, 138
BstMWI GCNNNNNNNGC 3 cut(s) 221, 341, 350
BstNI CCWGG 1 cut(s) 245
BstSCI CCNGG 2 cut(s) 243, 322
BstSLI GKGCMC 2 cut(s) 184, 329
BstV1I GCAGC 1 cut(s) 353
BstV2I GAAGAC 2 cut(s) 295, 317
BstX2I RGATCY 1 cut(s) 138
BstYI RGATCY 1 cut(s) 138
BsuRI GGCC 4 cut(s) 248, 259, 363, 384
BtsCI GGATG 1 cut(s) 240
BtsI GCAGTG 1 cut(s) 273
BtsIMutI CAGTG 1 cut(s) 273
Cac8I GCNNGC 2 cut(s) 355, 382
CfoI GCGC 1 cut(s) 226
Cfr10I RCCGGY 2 cut(s) 353, 380
Cfr13I GGNCC 1 cut(s) 391
Csp6I GTAC 1 cut(s) 166
CviAII CATG 2 cut(s) 133, 338
CviJI RGCY 9 cut(s) 151, 215, 248, 259, 344, 353, 363, 380, 384
CviKI_1 RGCY 9 cut(s) 151, 215, 248, 259, 344, 353, 363, 380, 384
CviQI GTAC 1 cut(s) 166
DpnI GATC 2 cut(s) 64, 140
DpnII GATC 2 cut(s) 62, 138
DrdI GACNNNNNNGTC 1 cut(s) 398
DseDI GACNNNNNNGTC 1 cut(s) 398
EaeI YGGCCR 1 cut(s) 382
Eam1104I CTCTTC 3 cut(s) 128, 269, 287
EarI CTCTTC 3 cut(s) 128, 269, 287
Eco147I AGGCCT 1 cut(s) 363
Eco47I GGWCC 1 cut(s) 391
EcoRII CCWGG 1 cut(s) 243
Esp3I CGTCTC 1 cut(s) 75
FaeI CATG 2 cut(s) 136, 341
FaiI YATR 4 cut(s) 119, 134, 339, 375
FalI AAGNNNNNCTT 3 cut(s) 155, 187, 400
FatI CATG 2 cut(s) 132, 337
Fnu4HI GCNGC 1 cut(s) 342
FokI GGATG 1 cut(s) 227
Fsp4HI GCNGC 1 cut(s) 342
FspBI CTAG 1 cut(s) 212
GlaI GCGC 1 cut(s) 225
GluI GCNGC 1 cut(s) 342
HaeIII GGCC 4 cut(s) 248, 259, 363, 384
HapII CCGG 4 cut(s) 323, 354, 381, 389
HhaI GCGC 1 cut(s) 226
Hin1II CATG 2 cut(s) 136, 341
Hin6I GCGC 1 cut(s) 224
HinP1I GCGC 1 cut(s) 224
HinfI GANTC 1 cut(s) 29
HpaII CCGG 4 cut(s) 323, 354, 381, 389
HphI GGTGA 1 cut(s) 190
Hpy166II GTNNAC 1 cut(s) 182
Hpy188I TCNGA 2 cut(s) 11, 421
Hpy188III TCNNGA 1 cut(s) 307
Hpy8I GTNNAC 1 cut(s) 182
Hpy99I CGWCG 3 cut(s) 299, 302, 404
HpyAV CCTTC 4 cut(s) 44, 118, 353, 426
HpyCH4III ACNGT 1 cut(s) 400
HpyCH4V TGCA 2 cut(s) 182, 341
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 341, 350
Hsp92II CATG 2 cut(s) 136, 341
HspAI GCGC 1 cut(s) 224
KroI GCCGGC 2 cut(s) 353, 380
KroNI GCCGGC 2 cut(s) 355, 382
Kzo9I GATC 2 cut(s) 62, 138
LmnI GCTCC 1 cut(s) 156
LpnPI CCDG 8 cut(s) 156, 230, 257, 299, 336, 367, 394, 402
Lsp1109I GCAGC 1 cut(s) 353
LweI GCATC 1 cut(s) 322
MaeI CTAG 1 cut(s) 212
MaeIII GTNAC 2 cut(s) 318, 410
MalI GATC 2 cut(s) 64, 140
MboI GATC 2 cut(s) 62, 138
MboII GAAGA 5 cut(s) 115, 256, 274, 295, 322
MflI RGATCY 1 cut(s) 138
MhlI GDGCHC 2 cut(s) 184, 329
MroNI GCCGGC 2 cut(s) 353, 380
MroXI GAANNNNTTC 1 cut(s) 33
MseI TTAA 1 cut(s) 42
MslI CAYNNNNRTG 1 cut(s) 401
MspA1I CMGCKG 1 cut(s) 344
MspI CCGG 4 cut(s) 323, 354, 381, 389
MspR9I CCNGG 2 cut(s) 245, 324
MvaI CCWGG 1 cut(s) 245
MwoI GCNNNNNNNGC 3 cut(s) 221, 341, 350
NaeI GCCGGC 2 cut(s) 355, 382
NciI CCSGG 1 cut(s) 324
NdeII GATC 2 cut(s) 62, 138
NgoMIV GCCGGC 2 cut(s) 353, 380
NlaIII CATG 2 cut(s) 136, 341
NlaIV GGNNCC 1 cut(s) 328
OliI CACNNNNGTG 1 cut(s) 401
PceI AGGCCT 1 cut(s) 363
PdiI GCCGGC 2 cut(s) 355, 382
PdmI GAANNNNTTC 1 cut(s) 33
PfeI GAWTC 1 cut(s) 29
PkrI GCNGC 1 cut(s) 343
Psp6I CCWGG 1 cut(s) 243
PspGI CCWGG 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 328
PspPI GGNCC 1 cut(s) 391
PsuI RGATCY 1 cut(s) 138
PvuII CAGCTG 1 cut(s) 344
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
RseI CAYNNNNRTG 1 cut(s) 401
SaqAI TTAA 1 cut(s) 42
SatI GCNGC 1 cut(s) 342
Sau3AI GATC 2 cut(s) 62, 138
Sau96I GGNCC 1 cut(s) 391
ScrFI CCNGG 2 cut(s) 245, 324
SduI GDGCHC 2 cut(s) 184, 329
SetI ASST 5 cut(s) 57, 110, 153, 317, 346
SfaNI GCATC 1 cut(s) 322
SinI GGWCC 1 cut(s) 391
SmiMI CAYNNNNRTG 1 cut(s) 401
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
SseBI AGGCCT 1 cut(s) 363
SspMI CTAG 1 cut(s) 212
StuI AGGCCT 1 cut(s) 363
StyD4I CCNGG 2 cut(s) 243, 322
TaaI ACNGT 1 cut(s) 400
TaqI TCGA 2 cut(s) 61, 369
TfiI GAWTC 1 cut(s) 29
Tru1I TTAA 1 cut(s) 42
Tru9I TTAA 1 cut(s) 42
TscAI CASTG 1 cut(s) 280
TseI GCWGC 1 cut(s) 341
TspRI CASTG 1 cut(s) 280
VneI GTGCAC 1 cut(s) 180
VpaK11BI GGWCC 1 cut(s) 391
XmnI GAANNNNTTC 1 cut(s) 33
XspI CTAG 1 cut(s) 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.