Rroxscaffold_1G00026790

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0017095
Physical Location & Seq
Reverse (-)
33734331 .. 33734624
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00026790.1

Sequence Viewer

Length: 294 bp
ATGGAGATCCCAGAAAAGCTCCTCAAGTTCAAGTACCACTTTCTCTGTGCACTCATTTTCTGCCTCACCCTTTACTCCCTAGCCCTCTTTGCGCCAAGATTTCTAACCATCCTGGCCTACTTTTGGCCTCTCTTCCTCTCCACTGCTCTCTTCCTCTTTGCCGTCGTCGTCTTCGGGAAGACCTCGTTACCGGGCACCGATGCTCATGCAGCTGACAAAGCCGGCGAAGGCCTCCTCGATTATGTAGCCGGCCAACCGGACCACACCATGGAAAGTTACCCTTCTGAAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.89

Weight (kDa)

5.41

Isoelectric Point (pI)

19.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017095)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13175
fragaria_vesca FvH4_3g29390
malus_domestica MD03G1183900.v1.1 MD11G1200800.v1.1
prunus_persica Prupe.4G242100_v2.0.a1
pyrus_communis pycom11g17320
rosa_chinensis RchiOBHm_Chr5g0053811
rosa_laevigata RLG00000034903
rosa_multiflora Rmu_sc0001759.1_g000011
rosa_roxburghii Rroxscaffold_1G00026790
rosa_rugosa Rorug05G0282800
rosa_samantha Rh5DG379700
rosa_wichuraiana Rw0G009580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 194
AccB7I CCANNNNNTGG 1 cut(s) 268
AcoI YGGCCR 1 cut(s) 250
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 2 cut(s) 123, 268
AgsI TTSAA 1 cut(s) 31
AjnI CCWGG 1 cut(s) 111
AluBI AGCT 2 cut(s) 19, 212
AluI AGCT 2 cut(s) 19, 212
Alw21I GWGCWC 1 cut(s) 52
Alw44I GTGCAC 1 cut(s) 48
AoxI GGCC 4 cut(s) 114, 125, 229, 250
ApaLI GTGCAC 1 cut(s) 48
ApeKI GCWGC 1 cut(s) 209
AspLEI GCGC 1 cut(s) 94
AspS9I GGNCC 1 cut(s) 259
AsuC2I CCSGG 1 cut(s) 192
AsuHPI GGTGA 1 cut(s) 58
AvaII GGWCC 1 cut(s) 259
BaeGI GKGCMC 2 cut(s) 52, 197
BanI GGYRCC 1 cut(s) 194
BbsI GAAGAC 2 cut(s) 163, 185
Bbv12I GWGCWC 1 cut(s) 52
BbvI GCAGC 1 cut(s) 221
BccI CCATC 1 cut(s) 116
BceAI ACGGC 1 cut(s) 146
BcgI CGANNNNNNTGC 2 cut(s) 188, 222
BciT130I CCWGG 1 cut(s) 113
BcnI CCSGG 1 cut(s) 192
BfaI CTAG 1 cut(s) 80
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
Bme1390I CCNGG 2 cut(s) 113, 192
Bme18I GGWCC 1 cut(s) 259
BmgT120I GGNCC 1 cut(s) 259
BmiI GGNNCC 1 cut(s) 196
BmrFI CCNGG 2 cut(s) 113, 192
BmsI GCATC 1 cut(s) 190
BpiI GAAGAC 2 cut(s) 163, 185
BpuEI CTTGAG 1 cut(s) 8
BpuMI CCSGG 1 cut(s) 192
BsaJI CCNNGG 1 cut(s) 267
BsaWI WCCGGW 1 cut(s) 256
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 268
Bse118I RCCGGY 2 cut(s) 221, 248
BseBI CCWGG 1 cut(s) 113
BseDI CCNNGG 1 cut(s) 267
BseGI GGATG 1 cut(s) 108
BseLI CCNNNNNNNGG 2 cut(s) 123, 268
BseRI GAGGAG 2 cut(s) 11, 224
BseSI GKGCMC 2 cut(s) 52, 197
BseXI GCAGC 1 cut(s) 221
BshFI GGCC 4 cut(s) 116, 127, 231, 252
BshNI GGYRCC 1 cut(s) 194
BsiHKAI GWGCWC 1 cut(s) 52
BsiSI CCGG 4 cut(s) 191, 222, 249, 257
BslI CCNNNNNNNGG 2 cut(s) 123, 268
BsnI GGCC 4 cut(s) 116, 127, 231, 252
Bsp1286I GDGCHC 2 cut(s) 52, 197
Bsp143I GATC 1 cut(s) 6
Bsp19I CCATGG 1 cut(s) 267
BspANI GGCC 4 cut(s) 116, 127, 231, 252
BspLI GGNNCC 1 cut(s) 196
BspT107I GGYRCC 1 cut(s) 194
BsrFI RCCGGY 2 cut(s) 221, 248
BssAI RCCGGY 2 cut(s) 221, 248
BssECI CCNNGG 1 cut(s) 267
BssMI GATC 1 cut(s) 6
BssT1I CCWWGG 1 cut(s) 267
Bst2UI CCWGG 1 cut(s) 113
Bst6I CTCTTC 2 cut(s) 137, 155
BstC8I GCNNGC 2 cut(s) 223, 250
BstDSI CCRYGG 1 cut(s) 267
BstF5I GGATG 1 cut(s) 108
BstHHI GCGC 1 cut(s) 94
BstKTI GATC 1 cut(s) 9
BstMBI GATC 1 cut(s) 6
BstMWI GCNNNNNNNGC 3 cut(s) 89, 209, 218
BstNI CCWGG 1 cut(s) 113
BstSCI CCNGG 2 cut(s) 111, 190
BstSLI GKGCMC 2 cut(s) 52, 197
BstV1I GCAGC 1 cut(s) 221
BstV2I GAAGAC 2 cut(s) 163, 185
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
BsuRI GGCC 4 cut(s) 116, 127, 231, 252
BtgI CCRYGG 1 cut(s) 267
BtsCI GGATG 1 cut(s) 108
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 141
Cac8I GCNNGC 2 cut(s) 223, 250
CfoI GCGC 1 cut(s) 94
Cfr10I RCCGGY 2 cut(s) 221, 248
Cfr13I GGNCC 1 cut(s) 259
Csp6I GTAC 1 cut(s) 34
CviAII CATG 2 cut(s) 206, 268
CviJI RGCY 9 cut(s) 19, 83, 116, 127, 212, 221, 231, 248, 252
CviKI_1 RGCY 9 cut(s) 19, 83, 116, 127, 212, 221, 231, 248, 252
CviQI GTAC 1 cut(s) 34
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
EaeI YGGCCR 1 cut(s) 250
Eam1104I CTCTTC 2 cut(s) 137, 155
EarI CTCTTC 2 cut(s) 137, 155
Eco130I CCWWGG 1 cut(s) 267
Eco147I AGGCCT 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 259
EcoRII CCWGG 1 cut(s) 111
EcoT14I CCWWGG 1 cut(s) 267
ErhI CCWWGG 1 cut(s) 267
FaeI CATG 2 cut(s) 209, 271
FaiI YATR 3 cut(s) 207, 243, 269
FalI AAGNNNNNCTT 3 cut(s) 23, 55, 265
FatI CATG 2 cut(s) 205, 267
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 1 cut(s) 95
Fsp4HI GCNGC 1 cut(s) 210
FspBI CTAG 1 cut(s) 80
GlaI GCGC 1 cut(s) 93
GluI GCNGC 1 cut(s) 210
HaeIII GGCC 4 cut(s) 116, 127, 231, 252
HapII CCGG 4 cut(s) 191, 222, 249, 257
HhaI GCGC 1 cut(s) 94
Hin1II CATG 2 cut(s) 209, 271
Hin6I GCGC 1 cut(s) 92
HinP1I GCGC 1 cut(s) 92
HpaII CCGG 4 cut(s) 191, 222, 249, 257
HphI GGTGA 1 cut(s) 58
Hpy166II GTNNAC 1 cut(s) 50
Hpy188I TCNGA 1 cut(s) 286
Hpy188III TCNNGA 1 cut(s) 175
Hpy8I GTNNAC 1 cut(s) 50
Hpy99I CGWCG 2 cut(s) 167, 170
HpyAV CCTTC 2 cut(s) 221, 291
HpyCH4V TGCA 2 cut(s) 50, 209
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 209, 218
Hsp92II CATG 2 cut(s) 209, 271
HspAI GCGC 1 cut(s) 92
KroI GCCGGC 2 cut(s) 221, 248
KroNI GCCGGC 2 cut(s) 223, 250
Kzo9I GATC 1 cut(s) 6
LmnI GCTCC 1 cut(s) 24
LpnPI CCDG 7 cut(s) 24, 98, 125, 204, 235, 262, 270
Lsp1109I GCAGC 1 cut(s) 221
LweI GCATC 1 cut(s) 190
MaeI CTAG 1 cut(s) 80
MaeIII GTNAC 2 cut(s) 186, 275
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 4 cut(s) 124, 142, 163, 190
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 2 cut(s) 52, 197
MnlI CCTC 9 cut(s) 32, 74, 95, 138, 146, 164, 193, 242, 245
MroNI GCCGGC 2 cut(s) 221, 248
MspA1I CMGCKG 1 cut(s) 212
MspI CCGG 4 cut(s) 191, 222, 249, 257
MspR9I CCNGG 2 cut(s) 113, 192
MvaI CCWGG 1 cut(s) 113
MwoI GCNNNNNNNGC 3 cut(s) 89, 209, 218
NaeI GCCGGC 2 cut(s) 223, 250
NciI CCSGG 1 cut(s) 192
NcoI CCATGG 1 cut(s) 267
NdeII GATC 1 cut(s) 6
NgoMIV GCCGGC 2 cut(s) 221, 248
NlaIII CATG 2 cut(s) 209, 271
NlaIV GGNNCC 1 cut(s) 196
PceI AGGCCT 1 cut(s) 231
PdiI GCCGGC 2 cut(s) 223, 250
PflMI CCANNNNNTGG 1 cut(s) 268
PkrI GCNGC 1 cut(s) 211
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
PspN4I GGNNCC 1 cut(s) 196
PspPI GGNCC 1 cut(s) 259
PsuI RGATCY 1 cut(s) 6
PvuII CAGCTG 1 cut(s) 212
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
SatI GCNGC 1 cut(s) 210
Sau3AI GATC 1 cut(s) 6
Sau96I GGNCC 1 cut(s) 259
ScrFI CCNGG 2 cut(s) 113, 192
SduI GDGCHC 2 cut(s) 52, 197
SetI ASST 3 cut(s) 21, 185, 214
SfaNI GCATC 1 cut(s) 190
SinI GGWCC 1 cut(s) 259
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
SseBI AGGCCT 1 cut(s) 231
SspMI CTAG 1 cut(s) 80
StuI AGGCCT 1 cut(s) 231
StyD4I CCNGG 2 cut(s) 111, 190
StyI CCWWGG 1 cut(s) 267
TaqI TCGA 1 cut(s) 237
TscAI CASTG 1 cut(s) 148
TseI GCWGC 1 cut(s) 209
TspRI CASTG 1 cut(s) 148
Van91I CCANNNNNTGG 1 cut(s) 268
VneI GTGCAC 1 cut(s) 48
VpaK11BI GGWCC 1 cut(s) 259
XspI CTAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.