Rorug05G0282800

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0017095
Physical Location & Seq
Forward (+)
32355285 .. 32355824
540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0282800.1

Sequence Viewer

Length: 540 bp
ATGGAGCTACAAACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACAGATTTCTGGCGAAGCCGTGCCAGGTGGGTTCCTACTCCAGATCAAATAAGGATCCTCAGGGATCTTTACTACGACAAGGGAGTTAAGACCCCAACTACAGAGCAGATTCACGAGATCTGTCTCCAGCTGCAACAGTATGGACAGGTTGAGGGCAAGAACATTTATTTTTGGTTCCAGAATGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGGTACTGGTGGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGGTGGATCCATCGACATCAATTTTGGGCCAGCTGGTGGATCCATTGACATCAATTTTGGGTCCACTAGTTCTACTGGTGCTGGTGGATCCATTGATCTCAATTTTGGTTCCACTGCTTCTACTGGTAATGAAGGATTTATTTACTTAAATTTTGTTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

19.23

Weight (kDa)

5.08

Isoelectric Point (pI)

39.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Homeodomain PF00046 30 - 91 3.3e-10 Homeodomain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0017095)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13175
fragaria_vesca FvH4_3g29390
malus_domestica MD03G1183900.v1.1 MD11G1200800.v1.1
prunus_persica Prupe.4G242100_v2.0.a1
pyrus_communis pycom11g17320
rosa_chinensis RchiOBHm_Chr5g0053811
rosa_laevigata RLG00000034903
rosa_multiflora Rmu_sc0001759.1_g000011
rosa_roxburghii Rroxscaffold_1G00026790
rosa_rugosa Rorug05G0282800
rosa_samantha Rh5DG379700
rosa_wichuraiana Rw0G009580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 413
AcsI RAATTY 1 cut(s) 526
AfaI GTAC 1 cut(s) 328
AfiI CCNNNNNNNGG 2 cut(s) 329, 413
AhlI ACTAGT 2 cut(s) 314, 443
AjnI CCWGG 2 cut(s) 92, 322
AjuI GAANNNNNNNTTGG 2 cut(s) 59, 91
AloI GAACNNNNNNTCC 2 cut(s) 304, 336
AluBI AGCT 3 cut(s) 7, 199, 410
AluI AGCT 3 cut(s) 7, 199, 410
Alw26I GTCTC 1 cut(s) 197
Ama87I CYCGRG 1 cut(s) 261
AoxI GGCC 1 cut(s) 404
ApeKI GCWGC 3 cut(s) 50, 199, 293
ApoI RAATTY 1 cut(s) 526
ArsI GACNNNNNNTTYG 4 cut(s) 383, 415, 416, 448
Asp700I GAANNNNTTC 1 cut(s) 316
AspS9I GGNCC 3 cut(s) 357, 404, 438
AsuC2I CCSGG 1 cut(s) 55
AvaI CYCGRG 1 cut(s) 261
AvaII GGWCC 2 cut(s) 357, 438
AxyI CCTNAGG 1 cut(s) 128
BaeGI GKGCMC 1 cut(s) 306
BamHI GGATCC 5 cut(s) 123, 335, 383, 416, 464
BanII GRGCYC 1 cut(s) 262
BauI CACGAG 1 cut(s) 182
BbvI GCAGC 3 cut(s) 62, 186, 280
BccI CCATC 2 cut(s) 26, 395
BceAI ACGGC 1 cut(s) 72
BciT130I CCWGG 2 cut(s) 94, 324
BcnI CCSGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 197
BcuI ACTAGT 2 cut(s) 314, 443
BfaI CTAG 2 cut(s) 315, 444
BfmI CTRYAG 1 cut(s) 168
BglII AGATCT 1 cut(s) 186
BisI GCNGC 3 cut(s) 51, 200, 294
BlsI GCNGC 3 cut(s) 52, 201, 295
Bme1390I CCNGG 3 cut(s) 55, 94, 324
Bme18I GGWCC 2 cut(s) 357, 438
BmeT110I CYCGRG 1 cut(s) 261
BmgT120I GGNCC 3 cut(s) 357, 404, 438
BmrFI CCNGG 3 cut(s) 55, 94, 324
BpmI CTGGAG 2 cut(s) 93, 179
BpuEI CTTGAG 1 cut(s) 282
BpuMI CCSGG 1 cut(s) 55
BsaJI CCNNGG 1 cut(s) 306
BsaXI ACNNNNNCTCC 2 cut(s) 304, 334
Bsc4I CCNNNNNNNGG 2 cut(s) 329, 413
Bse1I ACTGG 5 cut(s) 334, 367, 376, 457, 505
Bse21I CCTNAGG 1 cut(s) 128
BseBI CCWGG 2 cut(s) 94, 324
BseDI CCNNGG 1 cut(s) 306
BseGI GGATG 1 cut(s) 37
BseLI CCNNNNNNNGG 2 cut(s) 329, 413
BseMII CTCAG 1 cut(s) 142
BseNI ACTGG 5 cut(s) 334, 367, 376, 457, 505
BseSI GKGCMC 1 cut(s) 306
BseXI GCAGC 3 cut(s) 62, 186, 280
BseYI CCCAGC 1 cut(s) 15
BshFI GGCC 1 cut(s) 406
BsiHKCI CYCGRG 1 cut(s) 261
BsiSI CCGG 1 cut(s) 54
BslI CCNNNNNNNGG 2 cut(s) 329, 413
BsmAI GTCTC 1 cut(s) 197
BsnI GGCC 1 cut(s) 406
BsoBI CYCGRG 1 cut(s) 261
Bsp1286I GDGCHC 2 cut(s) 262, 306
Bsp19I CCATGG 1 cut(s) 306
BspANI GGCC 1 cut(s) 406
BspCNI CTCAG 1 cut(s) 141
BsrI ACTGG 5 cut(s) 334, 367, 376, 457, 505
BssECI CCNNGG 1 cut(s) 306
BssSI CACGAG 1 cut(s) 182
BssT1I CCWWGG 1 cut(s) 306
Bst2BI CACGAG 1 cut(s) 182
Bst2UI CCWGG 2 cut(s) 94, 324
Bst4CI ACNGT 1 cut(s) 207
Bst6I CTCTTC 1 cut(s) 272
BstC8I GCNNGC 1 cut(s) 408
BstDEI CTNAG 1 cut(s) 128
BstDSI CCRYGG 1 cut(s) 306
BstF5I GGATG 1 cut(s) 37
BstMAI GTCTC 1 cut(s) 197
BstNI CCWGG 2 cut(s) 94, 324
BstSCI CCNGG 3 cut(s) 53, 92, 322
BstSFI CTRYAG 1 cut(s) 168
BstSLI GKGCMC 1 cut(s) 306
BstV1I GCAGC 3 cut(s) 62, 186, 280
BstX2I RGATCY 7 cut(s) 123, 133, 186, 335, 383, 416, 464
BstYI RGATCY 7 cut(s) 123, 133, 186, 335, 383, 416, 464
Bsu36I CCTNAGG 1 cut(s) 128
BsuRI GGCC 1 cut(s) 406
BtgI CCRYGG 1 cut(s) 306
BtsCI GGATG 1 cut(s) 37
BtsI GCAGTG 1 cut(s) 489
BtsIMutI CAGTG 2 cut(s) 360, 489
Cac8I GCNNGC 1 cut(s) 408
Cfr13I GGNCC 3 cut(s) 357, 404, 438
Csp6I GTAC 1 cut(s) 327
CviAII CATG 1 cut(s) 307
CviJI RGCY 8 cut(s) 7, 53, 87, 199, 260, 293, 406, 410
CviKI_1 RGCY 8 cut(s) 7, 53, 87, 199, 260, 293, 406, 410
CviQI GTAC 1 cut(s) 327
DdeI CTNAG 1 cut(s) 128
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
Eco130I CCWWGG 1 cut(s) 306
Eco24I GRGCYC 1 cut(s) 262
Eco47I GGWCC 2 cut(s) 357, 438
Eco81I CCTNAGG 1 cut(s) 128
Eco88I CYCGRG 1 cut(s) 261
EcoRII CCWGG 2 cut(s) 92, 322
EcoT14I CCWWGG 1 cut(s) 306
EcoT38I GRGCYC 1 cut(s) 262
ErhI CCWWGG 1 cut(s) 306
FaeI CATG 1 cut(s) 310
FaiI YATR 3 cut(s) 210, 308, 538
FatI CATG 1 cut(s) 306
Fnu4HI GCNGC 3 cut(s) 51, 200, 294
FokI GGATG 1 cut(s) 44
FriOI GRGCYC 1 cut(s) 262
Fsp4HI GCNGC 3 cut(s) 51, 200, 294
FspBI CTAG 2 cut(s) 315, 444
GluI GCNGC 3 cut(s) 51, 200, 294
GsaI CCCAGC 1 cut(s) 19
GsuI CTGGAG 2 cut(s) 93, 179
HaeIII GGCC 1 cut(s) 406
HapII CCGG 1 cut(s) 54
Hin1II CATG 1 cut(s) 310
HinfI GANTC 1 cut(s) 178
HpaII CCGG 1 cut(s) 54
Hpy166II GTNNAC 2 cut(s) 360, 441
Hpy188III TCNNGA 4 cut(s) 110, 182, 247, 263
Hpy8I GTNNAC 2 cut(s) 360, 441
HpyAV CCTTC 1 cut(s) 503
HpyCH4III ACNGT 1 cut(s) 207
HpyCH4V TGCA 2 cut(s) 202, 285
HpyF3I CTNAG 1 cut(s) 128
Hsp92II CATG 1 cut(s) 310
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 3 cut(s) 62, 186, 280
MaeI CTAG 2 cut(s) 315, 444
MboII GAAGA 1 cut(s) 289
MflI RGATCY 7 cut(s) 123, 133, 186, 335, 383, 416, 464
MhlI GDGCHC 2 cut(s) 262, 306
MluCI AATT 5 cut(s) 349, 397, 430, 478, 526
MnlI CCTC 5 cut(s) 22, 29, 137, 214, 273
MroXI GAANNNNTTC 1 cut(s) 316
MseI TTAA 2 cut(s) 156, 524
MspA1I CMGCKG 2 cut(s) 199, 410
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 3 cut(s) 55, 94, 324
MvaI CCWGG 2 cut(s) 94, 324
NciI CCSGG 1 cut(s) 55
NcoI CCATGG 1 cut(s) 306
NlaIII CATG 1 cut(s) 310
PaeR7I CTCGAG 1 cut(s) 261
PdmI GAANNNNTTC 1 cut(s) 316
PfeI GAWTC 1 cut(s) 178
PflMI CCANNNNNTGG 1 cut(s) 413
PkrI GCNGC 3 cut(s) 52, 201, 295
Psp6I CCWGG 2 cut(s) 92, 322
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 2 cut(s) 92, 322
PspPI GGNCC 3 cut(s) 357, 404, 438
PsuI RGATCY 7 cut(s) 123, 133, 186, 335, 383, 416, 464
PvuII CAGCTG 2 cut(s) 199, 410
RsaI GTAC 1 cut(s) 328
RsaNI GTAC 1 cut(s) 327
SaqAI TTAA 2 cut(s) 156, 524
SatI GCNGC 3 cut(s) 51, 200, 294
Sau96I GGNCC 3 cut(s) 357, 404, 438
ScrFI CCNGG 3 cut(s) 55, 94, 324
SduI GDGCHC 2 cut(s) 262, 306
SetI ASST 6 cut(s) 9, 98, 201, 219, 284, 412
SfcI CTRYAG 1 cut(s) 168
Sfr274I CTCGAG 1 cut(s) 261
SinI GGWCC 2 cut(s) 357, 438
SlaI CTCGAG 1 cut(s) 261
SmlI CTYRAG 2 cut(s) 261, 297
SmoI CTYRAG 2 cut(s) 261, 297
SpeI ACTAGT 2 cut(s) 314, 443
Sse9I AATT 5 cut(s) 349, 397, 430, 478, 526
SspMI CTAG 2 cut(s) 315, 444
StyD4I CCNGG 3 cut(s) 53, 92, 322
StyI CCWWGG 1 cut(s) 306
TaaI ACNGT 1 cut(s) 207
TaqI TCGA 3 cut(s) 27, 262, 390
TasI AATT 5 cut(s) 349, 397, 430, 478, 526
TfiI GAWTC 1 cut(s) 178
Tru1I TTAA 2 cut(s) 156, 524
Tru9I TTAA 2 cut(s) 156, 524
TscAI CASTG 2 cut(s) 367, 496
TseI GCWGC 3 cut(s) 50, 199, 293
TspDTI ATGAA 3 cut(s) 290, 522, 525
TspRI CASTG 2 cut(s) 367, 496
Van91I CCANNNNNTGG 1 cut(s) 413
VpaK11BI GGWCC 2 cut(s) 357, 438
XapI RAATTY 1 cut(s) 526
XhoI CTCGAG 1 cut(s) 261
XmnI GAANNNNTTC 1 cut(s) 316
XspI CTAG 2 cut(s) 315, 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.