FvH4_3g29390

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0017095
Physical Location & Seq
Forward (+)
22484820 .. 22489034
4215 bp
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UTR
Exon/CDS
Intron
FvH4_3g29390.t1

Sequence Viewer

Length: 471 bp
ATGGAGATCCCAGAAAAGCTTCTCAAGTTCAAATACCACTTCCTCTCTGCACTCATTTTCTGCCTCACCCTCTACTCCCTCACCCTCTTTGCGCCAAGATTTCTAACCATTCTGGCTTACTTTTGGCCTCTCTTCCTCTCCACCGCCCTCTTCCTCTTTGCCGTCGTCGTCTTCGGGAAGACTTCGTTACCGGGCTCAGATTCCCACGCTGACAAAGCCGGCGAAGGCCTCCTCGATTATGTAGCCGGCCAGCCGGACCACGCCGTGGAAAGTTACCCTTCTGAAATTTTATTCGTTGCACAGTCGCAAACAAACAAAGAGGTGAAAGTCAGGAAACGACGCAGACGAAAAAGAAGACGAAGTCGCCCATTCGATCTCTTCTCTCCGCCGACAGCCTCCGGTGGCCTCAATCTCCTCTGGGTTGTTAAGCTGATAACCTCTAGCTCTCTTCCTCCAGCCATGGGCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.6

Weight (kDa)

10.0

Isoelectric Point (pI)

65.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017095)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13175
fragaria_vesca FvH4_3g29390
malus_domestica MD03G1183900.v1.1 MD11G1200800.v1.1
prunus_persica Prupe.4G242100_v2.0.a1
pyrus_communis pycom11g17320
rosa_chinensis RchiOBHm_Chr5g0053811
rosa_laevigata RLG00000034903
rosa_multiflora Rmu_sc0001759.1_g000011
rosa_roxburghii Rroxscaffold_1G00026790
rosa_rugosa Rorug05G0282800
rosa_samantha Rh5DG379700
rosa_wichuraiana Rw0G009580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 265
AciI CCGC 2 cut(s) 144, 386
AcoI YGGCCR 1 cut(s) 247
AcsI RAATTY 1 cut(s) 285
AdeI CACNNNGTG 1 cut(s) 265
AfiI CCNNNNNNNGG 2 cut(s) 265, 461
AgsI TTSAA 1 cut(s) 31
AluBI AGCT 3 cut(s) 19, 430, 444
AluI AGCT 3 cut(s) 19, 430, 444
AoxI GGCC 4 cut(s) 125, 226, 247, 403
ApoI RAATTY 1 cut(s) 285
Asp700I GAANNNNTTC 1 cut(s) 18
AspLEI GCGC 1 cut(s) 94
AspS9I GGNCC 1 cut(s) 256
AsuC2I CCSGG 1 cut(s) 192
AsuHPI GGTGA 3 cut(s) 58, 73, 334
AvaII GGWCC 1 cut(s) 256
BanII GRGCYC 1 cut(s) 197
BbsI GAAGAC 3 cut(s) 163, 185, 361
BceAI ACGGC 2 cut(s) 146, 248
BcnI CCSGG 1 cut(s) 192
BfaI CTAG 1 cut(s) 441
Bme1390I CCNGG 1 cut(s) 192
Bme18I GGWCC 1 cut(s) 256
BmgT120I GGNCC 1 cut(s) 256
BmrFI CCNGG 1 cut(s) 192
BpiI GAAGAC 3 cut(s) 163, 185, 361
BpmI CTGGAG 1 cut(s) 438
BpuEI CTTGAG 1 cut(s) 8
BpuMI CCSGG 1 cut(s) 192
BsaJI CCNNGG 2 cut(s) 264, 459
BsaWI WCCGGW 1 cut(s) 398
Bsc4I CCNNNNNNNGG 2 cut(s) 265, 461
Bse118I RCCGGY 2 cut(s) 218, 245
BseDI CCNNGG 2 cut(s) 264, 459
BseLI CCNNNNNNNGG 2 cut(s) 265, 461
BseMII CTCAG 1 cut(s) 210
BseRI GAGGAG 2 cut(s) 221, 404
BsgI GTGCAG 1 cut(s) 33
BshFI GGCC 4 cut(s) 127, 228, 249, 405
BsiSI CCGG 5 cut(s) 191, 219, 246, 254, 399
BslI CCNNNNNNNGG 2 cut(s) 265, 461
BsnI GGCC 4 cut(s) 127, 228, 249, 405
Bsp1286I GDGCHC 1 cut(s) 197
Bsp143I GATC 2 cut(s) 6, 373
Bsp19I CCATGG 1 cut(s) 459
BspACI CCGC 2 cut(s) 144, 386
BspANI GGCC 4 cut(s) 127, 228, 249, 405
BspCNI CTCAG 1 cut(s) 209
BsrFI RCCGGY 2 cut(s) 218, 245
BssAI RCCGGY 2 cut(s) 218, 245
BssECI CCNNGG 2 cut(s) 264, 459
BssMI GATC 2 cut(s) 6, 373
BssT1I CCWWGG 1 cut(s) 459
Bst4CI ACNGT 1 cut(s) 303
Bst6I CTCTTC 4 cut(s) 137, 155, 383, 453
BstC8I GCNNGC 3 cut(s) 220, 247, 251
BstDEI CTNAG 1 cut(s) 196
BstDSI CCRYGG 2 cut(s) 264, 459
BstHHI GCGC 1 cut(s) 94
BstKTI GATC 2 cut(s) 9, 376
BstMBI GATC 2 cut(s) 6, 373
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstSCI CCNGG 1 cut(s) 190
BstV2I GAAGAC 3 cut(s) 163, 185, 361
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
BsuRI GGCC 4 cut(s) 127, 228, 249, 405
BtgI CCRYGG 2 cut(s) 264, 459
Cac8I GCNNGC 3 cut(s) 220, 247, 251
CfoI GCGC 1 cut(s) 94
Cfr10I RCCGGY 2 cut(s) 218, 245
Cfr13I GGNCC 1 cut(s) 256
CseI GACGC 1 cut(s) 348
CviAII CATG 1 cut(s) 460
DdeI CTNAG 1 cut(s) 196
DpnI GATC 2 cut(s) 8, 375
DpnII GATC 2 cut(s) 6, 373
DraIII CACNNNGTG 1 cut(s) 265
EaeI YGGCCR 1 cut(s) 247
Eam1104I CTCTTC 4 cut(s) 137, 155, 383, 453
EarI CTCTTC 4 cut(s) 137, 155, 383, 453
EciI GGCGGA 1 cut(s) 375
Eco130I CCWWGG 1 cut(s) 459
Eco147I AGGCCT 1 cut(s) 228
Eco24I GRGCYC 1 cut(s) 197
Eco47I GGWCC 1 cut(s) 256
EcoT14I CCWWGG 1 cut(s) 459
EcoT38I GRGCYC 1 cut(s) 197
ErhI CCWWGG 1 cut(s) 459
FaeI CATG 1 cut(s) 463
FaiI YATR 2 cut(s) 240, 461
FalI AAGNNNNNCTT 2 cut(s) 262, 294
FatI CATG 1 cut(s) 459
FriOI GRGCYC 1 cut(s) 197
FspBI CTAG 1 cut(s) 441
GlaI GCGC 1 cut(s) 93
GsuI CTGGAG 1 cut(s) 438
HaeIII GGCC 4 cut(s) 127, 228, 249, 405
HapII CCGG 5 cut(s) 191, 219, 246, 254, 399
HgaI GACGC 1 cut(s) 348
HhaI GCGC 1 cut(s) 94
Hin1II CATG 1 cut(s) 463
Hin6I GCGC 1 cut(s) 92
HinP1I GCGC 1 cut(s) 92
HindIII AAGCTT 1 cut(s) 17
HinfI GANTC 1 cut(s) 200
HpaII CCGG 5 cut(s) 191, 219, 246, 254, 399
HphI GGTGA 3 cut(s) 58, 73, 334
Hpy188I TCNGA 2 cut(s) 199, 283
Hpy188III TCNNGA 2 cut(s) 175, 331
Hpy99I CGWCG 3 cut(s) 167, 170, 342
HpyAV CCTTC 2 cut(s) 218, 288
HpyCH4III ACNGT 1 cut(s) 303
HpyCH4V TGCA 2 cut(s) 50, 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
HpyF3I CTNAG 1 cut(s) 196
Hsp92II CATG 1 cut(s) 463
HspAI GCGC 1 cut(s) 92
KroI GCCGGC 2 cut(s) 218, 245
KroNI GCCGGC 2 cut(s) 220, 247
Kzo9I GATC 2 cut(s) 6, 373
MaeI CTAG 1 cut(s) 441
MaeIII GTNAC 2 cut(s) 186, 272
MalI GATC 2 cut(s) 8, 375
MboI GATC 2 cut(s) 6, 373
MboII GAAGA 7 cut(s) 124, 142, 163, 190, 366, 370, 440
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 1 cut(s) 197
MluCI AATT 1 cut(s) 285
MroNI GCCGGC 2 cut(s) 218, 245
MroXI GAANNNNTTC 1 cut(s) 18
MseI TTAA 1 cut(s) 426
MspI CCGG 5 cut(s) 191, 219, 246, 254, 399
MspR9I CCNGG 1 cut(s) 192
MwoI GCNNNNNNNGC 1 cut(s) 215
NaeI GCCGGC 2 cut(s) 220, 247
NciI CCSGG 1 cut(s) 192
NcoI CCATGG 1 cut(s) 459
NdeII GATC 2 cut(s) 6, 373
NgoMIV GCCGGC 2 cut(s) 218, 245
NlaIII CATG 1 cut(s) 463
PceI AGGCCT 1 cut(s) 228
PcsI WCGNNNNNNNCGW 1 cut(s) 343
PdiI GCCGGC 2 cut(s) 220, 247
PdmI GAANNNNTTC 1 cut(s) 18
PfeI GAWTC 1 cut(s) 200
PflFI GACNNNGTC 1 cut(s) 360
PflMI CCANNNNNTGG 1 cut(s) 265
PspPI GGNCC 1 cut(s) 256
PsuI RGATCY 1 cut(s) 6
PsyI GACNNNGTC 1 cut(s) 360
SaqAI TTAA 1 cut(s) 426
Sau3AI GATC 2 cut(s) 6, 373
Sau96I GGNCC 1 cut(s) 256
ScrFI CCNGG 1 cut(s) 192
SduI GDGCHC 1 cut(s) 197
SetI ASST 5 cut(s) 21, 324, 432, 440, 446
SinI GGWCC 1 cut(s) 256
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
Sse9I AATT 1 cut(s) 285
SseBI AGGCCT 1 cut(s) 228
SsiI CCGC 2 cut(s) 144, 386
SspMI CTAG 1 cut(s) 441
StuI AGGCCT 1 cut(s) 228
StyD4I CCNGG 1 cut(s) 190
StyI CCWWGG 1 cut(s) 459
TaaI ACNGT 1 cut(s) 303
TaqI TCGA 2 cut(s) 234, 372
TasI AATT 1 cut(s) 285
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 1 cut(s) 426
Tru9I TTAA 1 cut(s) 426
Tth111I GACNNNGTC 1 cut(s) 360
Van91I CCANNNNNTGG 1 cut(s) 265
VpaK11BI GGWCC 1 cut(s) 256
XapI RAATTY 1 cut(s) 285
XmnI GAANNNNTTC 1 cut(s) 18
XspI CTAG 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.