RLG00000034903

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0017095
Physical Location & Seq
Forward (+)
56805942 .. 56807341
1400 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034903

Sequence Viewer

Length: 351 bp
ATGGAGATCCCAGAAAAGCTCCTCAAGTTCAAGTACCACTTTCTCTCTGCGCTCATTTTCTGCCTCTCCCTTTACTCCCTAGCCCTCTTTGCGCCAAGATTTCTAACCATCCTGGCCTACTTTTGGCCTCTCTTCCTCTCCACTGCTCTCTTCCTCTTTGCCGTCGTCGTCTTCGGGAAGACCTCGTTACCGGGCACCGATGCTCATGCAGCTGACAAAGCCGGCGAAGGCCTCCTCGATTATGTAGCCGGCCAACCGGACCACACCGTGGAAAGTTACCCTTCTGAAATTCCTGCAGCAGTTCCACGGAAGCCCAAGTCTGCTTACTACTGTGCAAAGATTCCCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.88

Weight (kDa)

8.53

Isoelectric Point (pI)

21.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017095)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13175
fragaria_vesca FvH4_3g29390
malus_domestica MD03G1183900.v1.1 MD11G1200800.v1.1
prunus_persica Prupe.4G242100_v2.0.a1
pyrus_communis pycom11g17320
rosa_chinensis RchiOBHm_Chr5g0053811
rosa_laevigata RLG00000034903
rosa_multiflora Rmu_sc0001759.1_g000011
rosa_roxburghii Rroxscaffold_1G00026790
rosa_rugosa Rorug05G0282800
rosa_samantha Rh5DG379700
rosa_wichuraiana Rw0G009580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 194
AccB7I CCANNNNNTGG 1 cut(s) 268
AcoI YGGCCR 1 cut(s) 250
AcsI RAATTY 1 cut(s) 288
AdeI CACNNNGTG 1 cut(s) 268
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 2 cut(s) 123, 268
AgsI TTSAA 1 cut(s) 31
AjnI CCWGG 1 cut(s) 111
AluBI AGCT 2 cut(s) 19, 212
AluI AGCT 2 cut(s) 19, 212
AoxI GGCC 4 cut(s) 114, 125, 229, 250
ApeKI GCWGC 2 cut(s) 209, 296
ApoI RAATTY 1 cut(s) 288
AspLEI GCGC 2 cut(s) 52, 94
AspS9I GGNCC 1 cut(s) 259
AsuC2I CCSGG 1 cut(s) 192
AvaII GGWCC 1 cut(s) 259
BaeGI GKGCMC 1 cut(s) 197
BanI GGYRCC 1 cut(s) 194
BbsI GAAGAC 2 cut(s) 163, 185
BbvI GCAGC 2 cut(s) 221, 308
BccI CCATC 1 cut(s) 116
BceAI ACGGC 1 cut(s) 146
BcgI CGANNNNNNTGC 2 cut(s) 188, 222
BciT130I CCWGG 1 cut(s) 113
BcnI CCSGG 1 cut(s) 192
BfaI CTAG 1 cut(s) 80
BfmI CTRYAG 1 cut(s) 294
BisI GCNGC 2 cut(s) 210, 297
BlsI GCNGC 2 cut(s) 211, 298
Bme1390I CCNGG 2 cut(s) 113, 192
Bme18I GGWCC 1 cut(s) 259
BmgT120I GGNCC 1 cut(s) 259
BmiI GGNNCC 1 cut(s) 196
BmrFI CCNGG 2 cut(s) 113, 192
BmsI GCATC 1 cut(s) 190
BpiI GAAGAC 2 cut(s) 163, 185
BpuEI CTTGAG 1 cut(s) 8
BpuMI CCSGG 1 cut(s) 192
BsaJI CCNNGG 2 cut(s) 267, 305
BsaWI WCCGGW 1 cut(s) 256
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 268
Bse118I RCCGGY 2 cut(s) 221, 248
BseBI CCWGG 1 cut(s) 113
BseDI CCNNGG 2 cut(s) 267, 305
BseGI GGATG 1 cut(s) 108
BseLI CCNNNNNNNGG 2 cut(s) 123, 268
BseRI GAGGAG 2 cut(s) 11, 224
BseSI GKGCMC 1 cut(s) 197
BseXI GCAGC 2 cut(s) 221, 308
BshFI GGCC 4 cut(s) 116, 127, 231, 252
BshNI GGYRCC 1 cut(s) 194
BsiSI CCGG 4 cut(s) 191, 222, 249, 257
BslI CCNNNNNNNGG 2 cut(s) 123, 268
BsnI GGCC 4 cut(s) 116, 127, 231, 252
Bsp1286I GDGCHC 1 cut(s) 197
Bsp143I GATC 1 cut(s) 6
BspANI GGCC 4 cut(s) 116, 127, 231, 252
BspLI GGNNCC 1 cut(s) 196
BspMAI CTGCAG 1 cut(s) 298
BspT107I GGYRCC 1 cut(s) 194
BsrFI RCCGGY 2 cut(s) 221, 248
BssAI RCCGGY 2 cut(s) 221, 248
BssECI CCNNGG 2 cut(s) 267, 305
BssMI GATC 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 113
Bst4CI ACNGT 2 cut(s) 268, 332
Bst6I CTCTTC 2 cut(s) 137, 155
BstC8I GCNNGC 2 cut(s) 223, 250
BstDSI CCRYGG 2 cut(s) 267, 305
BstF5I GGATG 1 cut(s) 108
BstHHI GCGC 2 cut(s) 52, 94
BstKTI GATC 1 cut(s) 9
BstMBI GATC 1 cut(s) 6
BstMWI GCNNNNNNNGC 3 cut(s) 89, 209, 218
BstNI CCWGG 1 cut(s) 113
BstSCI CCNGG 2 cut(s) 111, 190
BstSFI CTRYAG 1 cut(s) 294
BstSLI GKGCMC 1 cut(s) 197
BstV1I GCAGC 2 cut(s) 221, 308
BstV2I GAAGAC 2 cut(s) 163, 185
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
BsuRI GGCC 4 cut(s) 116, 127, 231, 252
BtgI CCRYGG 2 cut(s) 267, 305
BtsCI GGATG 1 cut(s) 108
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 141
Cac8I GCNNGC 2 cut(s) 223, 250
CfoI GCGC 2 cut(s) 52, 94
Cfr10I RCCGGY 2 cut(s) 221, 248
Cfr13I GGNCC 1 cut(s) 259
Csp6I GTAC 1 cut(s) 34
CviAII CATG 1 cut(s) 206
CviQI GTAC 1 cut(s) 34
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
DraIII CACNNNGTG 1 cut(s) 268
EaeI YGGCCR 1 cut(s) 250
Eam1104I CTCTTC 2 cut(s) 137, 155
EarI CTCTTC 2 cut(s) 137, 155
Eco147I AGGCCT 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 259
EcoRII CCWGG 1 cut(s) 111
FaeI CATG 1 cut(s) 209
FaiI YATR 2 cut(s) 207, 243
FalI AAGNNNNNCTT 4 cut(s) 23, 55, 265, 297
FatI CATG 1 cut(s) 205
Fnu4HI GCNGC 2 cut(s) 210, 297
FokI GGATG 1 cut(s) 95
Fsp4HI GCNGC 2 cut(s) 210, 297
FspBI CTAG 1 cut(s) 80
GlaI GCGC 2 cut(s) 51, 93
GluI GCNGC 2 cut(s) 210, 297
HaeIII GGCC 4 cut(s) 116, 127, 231, 252
HapII CCGG 4 cut(s) 191, 222, 249, 257
HhaI GCGC 2 cut(s) 52, 94
Hin1II CATG 1 cut(s) 209
Hin6I GCGC 2 cut(s) 50, 92
HinP1I GCGC 2 cut(s) 50, 92
HinfI GANTC 1 cut(s) 340
HpaII CCGG 4 cut(s) 191, 222, 249, 257
Hpy188I TCNGA 1 cut(s) 286
Hpy188III TCNNGA 1 cut(s) 175
Hpy99I CGWCG 2 cut(s) 167, 170
HpyAV CCTTC 2 cut(s) 221, 291
HpyCH4III ACNGT 2 cut(s) 268, 332
HpyCH4V TGCA 3 cut(s) 209, 296, 335
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 209, 218
Hsp92II CATG 1 cut(s) 209
HspAI GCGC 2 cut(s) 50, 92
KroI GCCGGC 2 cut(s) 221, 248
KroNI GCCGGC 2 cut(s) 223, 250
Kzo9I GATC 1 cut(s) 6
LmnI GCTCC 1 cut(s) 24
LpnPI CCDG 8 cut(s) 24, 98, 125, 204, 235, 262, 270, 306
Lsp1109I GCAGC 2 cut(s) 221, 308
LweI GCATC 1 cut(s) 190
MaeI CTAG 1 cut(s) 80
MaeIII GTNAC 2 cut(s) 186, 275
MalI GATC 1 cut(s) 8
MboI GATC 1 cut(s) 6
MboII GAAGA 4 cut(s) 124, 142, 163, 190
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 1 cut(s) 197
MluCI AATT 1 cut(s) 288
MnlI CCTC 9 cut(s) 32, 74, 95, 138, 146, 164, 193, 242, 245
MroNI GCCGGC 2 cut(s) 221, 248
MspA1I CMGCKG 1 cut(s) 212
MspI CCGG 4 cut(s) 191, 222, 249, 257
MspR9I CCNGG 2 cut(s) 113, 192
MvaI CCWGG 1 cut(s) 113
MwoI GCNNNNNNNGC 3 cut(s) 89, 209, 218
NaeI GCCGGC 2 cut(s) 223, 250
NciI CCSGG 1 cut(s) 192
NdeII GATC 1 cut(s) 6
NgoMIV GCCGGC 2 cut(s) 221, 248
NlaIII CATG 1 cut(s) 209
NlaIV GGNNCC 1 cut(s) 196
PceI AGGCCT 1 cut(s) 231
PdiI GCCGGC 2 cut(s) 223, 250
PfeI GAWTC 1 cut(s) 340
PflMI CCANNNNNTGG 1 cut(s) 268
PkrI GCNGC 2 cut(s) 211, 298
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
PspN4I GGNNCC 1 cut(s) 196
PspPI GGNCC 1 cut(s) 259
PstI CTGCAG 1 cut(s) 298
PsuI RGATCY 1 cut(s) 6
PvuII CAGCTG 1 cut(s) 212
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
SatI GCNGC 2 cut(s) 210, 297
Sau3AI GATC 1 cut(s) 6
Sau96I GGNCC 1 cut(s) 259
ScrFI CCNGG 2 cut(s) 113, 192
SduI GDGCHC 1 cut(s) 197
SetI ASST 3 cut(s) 21, 185, 214
SfaNI GCATC 1 cut(s) 190
SfcI CTRYAG 1 cut(s) 294
SinI GGWCC 1 cut(s) 259
SmlI CTYRAG 1 cut(s) 23
SmoI CTYRAG 1 cut(s) 23
Sse9I AATT 1 cut(s) 288
SseBI AGGCCT 1 cut(s) 231
SspMI CTAG 1 cut(s) 80
StuI AGGCCT 1 cut(s) 231
StyD4I CCNGG 2 cut(s) 111, 190
TaaI ACNGT 2 cut(s) 268, 332
TaqI TCGA 1 cut(s) 237
TasI AATT 1 cut(s) 288
TfiI GAWTC 1 cut(s) 340
TscAI CASTG 1 cut(s) 148
TseI GCWGC 2 cut(s) 209, 296
TspGWI ACGGA 1 cut(s) 322
TspRI CASTG 1 cut(s) 148
Van91I CCANNNNNTGG 1 cut(s) 268
VpaK11BI GGWCC 1 cut(s) 259
XapI RAATTY 1 cut(s) 288
XspI CTAG 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.