AT3G13550

Belongs to the ubiquitin-conjugating enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0015505
Physical Location & Seq
Reverse (-)
4423237 .. 4424894
1658 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G13550.2

Sequence Viewer

Length: 549 bp
ATGATGACACCTGGCGGAAGCGGGAGGTTGAGACCGTTACCGACGGCGATGTACGCCGGATATTCAGGAACGGCGTCGTCTTGGGTAGCGAAGACTTCAGTTTCTGCGTCAGGGAAGAGGATACAGAGGGAGATGGCTGAGCTTAACATTGATCCACCTCCTGATTGCTCAGCTGGTCCAAAAGGAGATAATCTCTACCATTGGATCGCCACCATCATTGGTCCTTCGGGAACTCCCTATGAAGGAGGGATCTTTTTCCTGGATATAATTTTCCCATCTGATTATCCATTCAAGCCACCTAAGTTGGTGTTCAAGACTCGGATTTACCATTGCAATGTTGATACTGCGGGAGATTTAAGTGTGAACATTCTAAGAGATAGTTGGAGTCCAGCCCTTACAATCACTAAAGTCTTACAAGCCATCAGATCTATCTTCTTAAAACCTGAACCCTATAGTCCAGCTTTACCGGTGATTGCACGGCTCTACTTGACAGATAGAGAAAAGCATGACGAGGTAGCCAAAGAATGGACATTGCGATTTGCCAAGTGA

Protein Analysis

182

Amino Acids

20.13

Weight (kDa)

9.06

Isoelectric Point (pI)

42.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 40 - 151 5.9e-38 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015505)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13550 AT3G13550
fragaria_vesca FvH4_3g45321 FvH4_3g45321
malus_domestica MD03G1006100.v1.1
prunus_persica Prupe.6G005800_v2.0.a1
pyrus_communis pycom03g00610
rosa_chinensis RchiOBHm_Chr5g0083101
rosa_laevigata RLG00000037011
rosa_rugosa Rorug05G0482200 Rorug05G0482200
rosa_samantha Rh5AG531900 Rh5BG559000 Rh5CG581900 Rh5DG567800
rosa_wichuraiana Rw5G049650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 525
AciI CCGC 3 cut(s) 15, 21, 347
AclWI GGATC 3 cut(s) 146, 212, 257
AcuI CTGAAG 1 cut(s) 81
AcyI GRCGYC 1 cut(s) 74
AfaI GTAC 1 cut(s) 53
AfiI CCNNNNNNNGG 2 cut(s) 242, 525
AgeI ACCGGT 1 cut(s) 466
AgsI TTSAA 2 cut(s) 292, 313
AjnI CCWGG 2 cut(s) 10, 258
AluBI AGCT 3 cut(s) 142, 173, 461
AluI AGCT 3 cut(s) 142, 173, 461
Alw26I GTCTC 1 cut(s) 25
AlwI GGATC 3 cut(s) 146, 212, 257
AlwNI CAGNNNCTG 1 cut(s) 104
AsiGI ACCGGT 1 cut(s) 466
AspS9I GGNCC 2 cut(s) 176, 221
AsuHPI GGTGA 1 cut(s) 481
AvaII GGWCC 2 cut(s) 176, 221
BbsI GAAGAC 1 cut(s) 98
BccI CCATC 4 cut(s) 127, 221, 283, 428
BceAI ACGGC 3 cut(s) 60, 87, 494
BciT130I CCWGG 2 cut(s) 12, 260
BciVI GTATCC 1 cut(s) 114
BcoDI GTCTC 1 cut(s) 25
BfmI CTRYAG 1 cut(s) 451
BfuI GTATCC 1 cut(s) 114
BglII AGATCT 1 cut(s) 425
BlpI GCTNAGC 2 cut(s) 138, 169
Bme1390I CCNGG 2 cut(s) 12, 260
Bme18I GGWCC 2 cut(s) 176, 221
BmgT120I GGNCC 2 cut(s) 176, 221
BmrFI CCNGG 2 cut(s) 12, 260
BpiI GAAGAC 1 cut(s) 98
BplI GAGNNNNNCTC 2 cut(s) 177, 209
Bpu1102I GCTNAGC 2 cut(s) 138, 169
BsaHI GRCGYC 1 cut(s) 74
BsaI GGTCTC 1 cut(s) 25
BsaWI WCCGGW 1 cut(s) 466
Bsc4I CCNNNNNNNGG 2 cut(s) 242, 525
Bse118I RCCGGY 1 cut(s) 466
Bse3DI GCAATG 3 cut(s) 328, 340, 530
BseBI CCWGG 2 cut(s) 12, 260
BseLI CCNNNNNNNGG 2 cut(s) 242, 525
BseMI GCAATG 3 cut(s) 328, 340, 530
BseMII CTCAG 2 cut(s) 129, 183
BshTI ACCGGT 1 cut(s) 466
BsiSI CCGG 2 cut(s) 57, 467
BslI CCNNNNNNNGG 2 cut(s) 242, 525
BsmAI GTCTC 1 cut(s) 25
Bso31I GGTCTC 1 cut(s) 25
Bsp143I GATC 4 cut(s) 151, 204, 249, 425
Bsp1720I GCTNAGC 2 cut(s) 138, 169
BspACI CCGC 3 cut(s) 15, 21, 347
BspCNI CTCAG 2 cut(s) 130, 182
BspPI GGATC 3 cut(s) 146, 212, 257
BspTNI GGTCTC 1 cut(s) 25
BsrDI GCAATG 3 cut(s) 328, 340, 530
BsrFI RCCGGY 1 cut(s) 466
BssAI RCCGGY 1 cut(s) 466
BssMI GATC 4 cut(s) 151, 204, 249, 425
BssNI GRCGYC 1 cut(s) 74
Bst2UI CCWGG 2 cut(s) 12, 260
Bst4CI ACNGT 1 cut(s) 36
Bst6I CTCTTC 1 cut(s) 110
BstACI GRCGYC 1 cut(s) 74
BstDEI CTNAG 4 cut(s) 138, 169, 300, 371
BstKTI GATC 4 cut(s) 154, 207, 252, 428
BstMAI GTCTC 1 cut(s) 25
BstMBI GATC 4 cut(s) 151, 204, 249, 425
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNI CCWGG 2 cut(s) 12, 260
BstSCI CCNGG 2 cut(s) 10, 258
BstSFI CTRYAG 1 cut(s) 451
BstV2I GAAGAC 1 cut(s) 98
BstX2I RGATCY 2 cut(s) 249, 425
BstYI RGATCY 2 cut(s) 249, 425
BsuI GTATCC 1 cut(s) 114
BtgZI GCGATG 1 cut(s) 62
CaiI CAGNNNCTG 1 cut(s) 104
Cfr10I RCCGGY 1 cut(s) 466
Cfr13I GGNCC 2 cut(s) 176, 221
CseI GACGC 2 cut(s) 63, 96
Csp6I GTAC 1 cut(s) 52
CspAI ACCGGT 1 cut(s) 466
CspCI CAANNNNNGTGG 4 cut(s) 199, 234, 285, 320
CviAII CATG 1 cut(s) 506
CviJI RGCY 9 cut(s) 137, 142, 173, 295, 392, 419, 461, 481, 518
CviKI_1 RGCY 9 cut(s) 137, 142, 173, 295, 392, 419, 461, 481, 518
CviQI GTAC 1 cut(s) 52
DdeI CTNAG 4 cut(s) 138, 169, 300, 371
DpnI GATC 4 cut(s) 153, 206, 251, 427
DpnII GATC 4 cut(s) 151, 204, 249, 425
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
EciI GGCGGA 1 cut(s) 30
Eco31I GGTCTC 1 cut(s) 25
Eco47I GGWCC 2 cut(s) 176, 221
Eco57I CTGAAG 1 cut(s) 81
EcoRII CCWGG 2 cut(s) 10, 258
FaeI CATG 1 cut(s) 509
FaiI YATR 4 cut(s) 240, 266, 453, 507
FatI CATG 1 cut(s) 505
FauI CCCGC 2 cut(s) 14, 340
HapII CCGG 2 cut(s) 57, 467
HgaI GACGC 2 cut(s) 63, 96
Hin1I GRCGYC 1 cut(s) 74
Hin1II CATG 1 cut(s) 509
HinfI GANTC 2 cut(s) 316, 385
HpaII CCGG 2 cut(s) 57, 467
HphI GGTGA 1 cut(s) 481
Hpy166II GTNNAC 1 cut(s) 364
Hpy188I TCNGA 3 cut(s) 280, 321, 425
Hpy188III TCNNGA 4 cut(s) 66, 161, 228, 313
Hpy8I GTNNAC 1 cut(s) 364
Hpy99I CGWCG 2 cut(s) 46, 79
HpyAV CCTTC 2 cut(s) 234, 236
HpyCH4III ACNGT 1 cut(s) 36
HpyCH4V TGCA 2 cut(s) 333, 476
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 4 cut(s) 138, 169, 300, 371
Hsp92I GRCGYC 1 cut(s) 74
Hsp92II CATG 1 cut(s) 509
Kzo9I GATC 4 cut(s) 151, 204, 249, 425
MaeIII GTNAC 1 cut(s) 36
MalI GATC 4 cut(s) 153, 206, 251, 427
MboI GATC 4 cut(s) 151, 204, 249, 425
MboII GAAGA 3 cut(s) 103, 127, 424
MflI RGATCY 2 cut(s) 249, 425
MluCI AATT 1 cut(s) 267
MlyI GAGTC 2 cut(s) 310, 394
MmeI TCCRAC 1 cut(s) 362
MnlI CCTC 6 cut(s) 18, 111, 120, 168, 239, 505
MseI TTAA 3 cut(s) 144, 356, 437
MslI CAYNNNNRTG 1 cut(s) 333
MspA1I CMGCKG 1 cut(s) 173
MspI CCGG 2 cut(s) 57, 467
MspR9I CCNGG 2 cut(s) 12, 260
MvaI CCWGG 2 cut(s) 12, 260
MwoI GCNNNNNNNGC 1 cut(s) 53
NdeII GATC 4 cut(s) 151, 204, 249, 425
NlaIII CATG 1 cut(s) 509
PflMI CCANNNNNTGG 1 cut(s) 525
PfoI TCCNGGA 1 cut(s) 258
PinAI ACCGGT 1 cut(s) 466
PleI GAGTC 2 cut(s) 310, 393
PpsI GAGTC 2 cut(s) 310, 393
Psp6I CCWGG 2 cut(s) 10, 258
PspGI CCWGG 2 cut(s) 10, 258
PspPI GGNCC 2 cut(s) 176, 221
PstNI CAGNNNCTG 1 cut(s) 104
PsuI RGATCY 2 cut(s) 249, 425
PvuII CAGCTG 1 cut(s) 173
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
RseI CAYNNNNRTG 1 cut(s) 333
SaqAI TTAA 3 cut(s) 144, 356, 437
Sau3AI GATC 4 cut(s) 151, 204, 249, 425
Sau96I GGNCC 2 cut(s) 176, 221
SchI GAGTC 2 cut(s) 310, 394
ScrFI CCNGG 2 cut(s) 12, 260
SetI ASST 9 cut(s) 13, 29, 144, 160, 175, 301, 445, 463, 516
SfcI CTRYAG 1 cut(s) 451
SinI GGWCC 2 cut(s) 176, 221
SmiMI CAYNNNNRTG 1 cut(s) 333
Sse9I AATT 1 cut(s) 267
SsiI CCGC 3 cut(s) 15, 21, 347
StyD4I CCNGG 2 cut(s) 10, 258
TaaI ACNGT 1 cut(s) 36
TasI AATT 1 cut(s) 267
Tru1I TTAA 3 cut(s) 144, 356, 437
Tru9I TTAA 3 cut(s) 144, 356, 437
TspDTI ATGAA 1 cut(s) 255
Van91I CCANNNNNTGG 1 cut(s) 525
VpaK11BI GGWCC 2 cut(s) 176, 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.