Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0015505

Physical Location & Seq

Genomic Coordinates Reverse (-)

66337066 .. 66339712

Gene Structure 2647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0482200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAAAATGGGCTTCTCCGTCCTGCTCCTTGTGTTTGCTCTGCTCCTTACTCAGTCGACTGCTTCTCCCAACTCCGCCGCCGCTTCACCGGCATCTCCTCCAGCCGCCGCCGCTTCACCTGCGATTCCTCCTGCCGGCTTCCCTTCCGCGGCGACTCCTCCAGCCGGCTTCGCTTCCGCGGCGACTCCTCCCGCCGGCTTCGCTTTCGCGGCGACTCCTCTCGCCGGCTTCGCTTCCGCGGAGACTCCCATCGCCGGCTTCGCTTCCGCGGCGAATCCTCTCGCCGGCTTCGCTGCGGCTGCGAATCCTCCCGCCGGCTTCGCTTCGGCTATGGCTTGTTCTGGCCGCGACGCACGTGATTCTTCTTTCGGCGGCGAGCCACTTGCTAATTCTTCCGGCGGCGACGTCAATCCAGGTTCTTCGGATTCTCACACTCCTCCTTCATCCACTCTTCGAACCTTAAGAGAATTCCTCTTGGCCATTTTCAATTTCTTGGATGAGAATCCGATTGCCTGCTCCATGATGCTAGCCCTAGTAGTCAGTTCATCGGGATCACCCAACCCTACGGATCTCATCAATAACCAAGTCCTCCTGCTTGCTTTCTCGGTTTTGTTGGTGTCGATACTGAGGGCTCTTCTATATGTAATCCTGCATCTTCTCCTCTACAATGCGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010099 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:2000026 GO:2000030

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

225

Amino Acids

22.41

Weight (kDa)

5.07

Isoelectric Point (pI)

50.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13550 AT3G13550
fragaria_vesca	FvH4_3g45321 FvH4_3g45321
malus_domestica	MD03G1006100.v1.1
prunus_persica	Prupe.6G005800_v2.0.a1
pyrus_communis	pycom03g00610
rosa_chinensis	RchiOBHm_Chr5g0083101
rosa_laevigata	RLG00000037011
rosa_rugosa	Rorug05G0482200 Rorug05G0482200
rosa_samantha	Rh5AG531900 Rh5BG559000 Rh5CG581900 Rh5DG567800
rosa_wichuraiana	Rw5G049650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	127
AatII	GACGTC	1 cut(s)	408
Acc16I	TGCGCA	1 cut(s)	672
Acc36I	ACCTGC	1 cut(s)	127
AccI	GTMKAC	1 cut(s)	56
AccII	CGCG	6 cut(s)	149, 179, 209, 239, 269, 348
AclWI	GGATC	2 cut(s)	559, 576
AcoI	YGGCCR	2 cut(s)	343, 477
AcsI	RAATTY	1 cut(s)	467
AcvI	CACGTG	1 cut(s)	356
AcyI	GRCGYC	1 cut(s)	405
AfiI	CCNNNNNNNGG	8 cut(s)	134, 148, 164, 194, 224, 254, 284, 314
AflII	CTTAAG	1 cut(s)	460
AgsI	TTSAA	1 cut(s)	487
AjnI	CCWGG	1 cut(s)	412
Alw26I	GTCTC	1 cut(s)	236
AlwI	GGATC	2 cut(s)	559, 576
AoxI	GGCC	2 cut(s)	343, 477
ApeKI	GCWGC	2 cut(s)	293, 299
ApoI	RAATTY	1 cut(s)	467
AspLEI	GCGC	1 cut(s)	673
AsuHPI	GGTGA	3 cut(s)	78, 108, 546
AsuII	TTCGAA	1 cut(s)	454
AsuNHI	GCTAGC	1 cut(s)	526
BalI	TGGCCA	1 cut(s)	479
BanII	GRGCYC	1 cut(s)	634
BbrPI	CACGTG	1 cut(s)	356
BbvI	GCAGC	2 cut(s)	280, 286
BccI	CCATC	1 cut(s)	257
BcgI	CGANNNNNNTGC	2 cut(s)	365, 399
BciT130I	CCWGG	1 cut(s)	414
BcoDI	GTCTC	1 cut(s)	236
BfaI	CTAG	2 cut(s)	527, 533
BfrI	CTTAAG	1 cut(s)	460
BfuAI	ACCTGC	1 cut(s)	127
Bme1390I	CCNGG	1 cut(s)	414
BmrFI	CCNGG	1 cut(s)	414
BmsI	GCATC	3 cut(s)	101, 513, 661
BmtI	GCTAGC	1 cut(s)	530
BplI	GAGNNNNNCTC	2 cut(s)	456, 488
BpmI	CTGGAG	2 cut(s)	84, 144
Bpu14I	TTCGAA	1 cut(s)	454
BsaAI	YACGTR	1 cut(s)	356
BsaBI	GATNNNNATC	1 cut(s)	501
BsaHI	GRCGYC	1 cut(s)	405
BsaJI	CCNNGG	4 cut(s)	147, 177, 237, 267
BsaXI	ACNNNNNCTCC	2 cut(s)	49, 79
Bsc4I	CCNNNNNNNGG	8 cut(s)	134, 148, 164, 194, 224, 254, 284, 314
Bse118I	RCCGGY	8 cut(s)	88, 134, 164, 194, 224, 254, 284, 314
Bse8I	GATNNNNATC	1 cut(s)	501
BseBI	CCWGG	1 cut(s)	414
BseDI	CCNNGG	4 cut(s)	147, 177, 237, 267
BseGI	GGATG	2 cut(s)	443, 502
BseJI	GATNNNNATC	1 cut(s)	501
BseLI	CCNNNNNNNGG	8 cut(s)	134, 148, 164, 194, 224, 254, 284, 314
BseMII	CTCAG	2 cut(s)	65, 617
BseRI	GAGGAG	6 cut(s)	87, 147, 177, 207, 426, 650
BseXI	GCAGC	2 cut(s)	280, 286
Bsh1236I	CGCG	6 cut(s)	149, 179, 209, 239, 269, 348
BshFI	GGCC	2 cut(s)	345, 479
BsiSI	CCGG	9 cut(s)	89, 135, 165, 195, 225, 255, 285, 315, 396
BslI	CCNNNNNNNGG	8 cut(s)	134, 148, 164, 194, 224, 254, 284, 314
BsmAI	GTCTC	1 cut(s)	236
BsnI	GGCC	2 cut(s)	345, 479
Bsp119I	TTCGAA	1 cut(s)	454
Bsp1286I	GDGCHC	1 cut(s)	634
Bsp143I	GATC	2 cut(s)	551, 568
BspANI	GGCC	2 cut(s)	345, 479
BspCNI	CTCAG	2 cut(s)	64, 618
BspFNI	CGCG	6 cut(s)	149, 179, 209, 239, 269, 348
BspMI	ACCTGC	1 cut(s)	127
BspOI	GCTAGC	1 cut(s)	530
BspPI	GGATC	2 cut(s)	559, 576
BspQI	GCTCTTC	1 cut(s)	639
BspT104I	TTCGAA	1 cut(s)	454
BspTI	CTTAAG	1 cut(s)	460
BsrFI	RCCGGY	8 cut(s)	88, 134, 164, 194, 224, 254, 284, 314
BssAI	RCCGGY	8 cut(s)	88, 134, 164, 194, 224, 254, 284, 314
BssECI	CCNNGG	4 cut(s)	147, 177, 237, 267
BssMI	GATC	2 cut(s)	551, 568
BssNI	GRCGYC	1 cut(s)	405
Bst2UI	CCWGG	1 cut(s)	414
Bst6I	CTCTTC	2 cut(s)	456, 639
BstACI	GRCGYC	1 cut(s)	405
BstAFI	CTTAAG	1 cut(s)	460
BstBAI	YACGTR	1 cut(s)	356
BstBI	TTCGAA	1 cut(s)	454
BstDEI	CTNAG	2 cut(s)	51, 626
BstDSI	CCRYGG	4 cut(s)	147, 177, 237, 267
BstF5I	GGATG	2 cut(s)	443, 502
BstFNI	CGCG	6 cut(s)	149, 179, 209, 239, 269, 348
BstHHI	GCGC	1 cut(s)	673
BstKTI	GATC	2 cut(s)	554, 571
BstMAI	GTCTC	1 cut(s)	236
BstMBI	GATC	2 cut(s)	551, 568
BstNI	CCWGG	1 cut(s)	414
BstSCI	CCNGG	1 cut(s)	412
BstUI	CGCG	6 cut(s)	149, 179, 209, 239, 269, 348
BstV1I	GCAGC	2 cut(s)	280, 286
BstX2I	RGATCY	1 cut(s)	568
BstYI	RGATCY	1 cut(s)	568
BsuRI	GGCC	2 cut(s)	345, 479
BtgI	CCRYGG	4 cut(s)	147, 177, 237, 267
BtgZI	GCGATG	1 cut(s)	235
BtsCI	GGATG	2 cut(s)	443, 502
BveI	ACCTGC	1 cut(s)	127
CfoI	GCGC	1 cut(s)	673
Cfr10I	RCCGGY	8 cut(s)	88, 134, 164, 194, 224, 254, 284, 314
Cfr42I	CCGCGG	4 cut(s)	150, 180, 240, 270
CseI	GACGC	1 cut(s)	359
CviAII	CATG	1 cut(s)	520
DdeI	CTNAG	2 cut(s)	51, 626
DpnI	GATC	2 cut(s)	553, 570
DpnII	GATC	2 cut(s)	551, 568
EaeI	YGGCCR	2 cut(s)	343, 477
Eam1104I	CTCTTC	2 cut(s)	456, 639
EarI	CTCTTC	2 cut(s)	456, 639
EciI	GGCGGA	1 cut(s)	64
Eco24I	GRGCYC	1 cut(s)	634
Eco72I	CACGTG	1 cut(s)	356
EcoRI	GAATTC	1 cut(s)	467
EcoRII	CCWGG	1 cut(s)	412
EcoT38I	GRGCYC	1 cut(s)	634
FaeI	CATG	1 cut(s)	523
FaiI	YATR	4 cut(s)	332, 521, 640, 642
FatI	CATG	1 cut(s)	519
FauI	CCCGC	2 cut(s)	199, 319
FblI	GTMKAC	1 cut(s)	56
FokI	GGATG	2 cut(s)	430, 509
FriOI	GRGCYC	1 cut(s)	634
FspAI	RTGCGCAY	1 cut(s)	672
FspBI	CTAG	2 cut(s)	527, 533
FspI	TGCGCA	1 cut(s)	672
GlaI	GCGC	1 cut(s)	672
GsuI	CTGGAG	2 cut(s)	84, 144
HaeIII	GGCC	2 cut(s)	345, 479
HapII	CCGG	9 cut(s)	89, 135, 165, 195, 225, 255, 285, 315, 396
HgaI	GACGC	1 cut(s)	359
HhaI	GCGC	1 cut(s)	673
Hin1I	GRCGYC	1 cut(s)	405
Hin1II	CATG	1 cut(s)	523
Hin6I	GCGC	1 cut(s)	671
HinP1I	GCGC	1 cut(s)	671
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HpaII	CCGG	9 cut(s)	89, 135, 165, 195, 225, 255, 285, 315, 396
HphI	GGTGA	3 cut(s)	78, 108, 546
Hpy166II	GTNNAC	1 cut(s)	57
Hpy188I	TCNGA	2 cut(s)	424, 507
Hpy188III	TCNNGA	1 cut(s)	549
Hpy8I	GTNNAC	1 cut(s)	57
Hpy99I	CGWCG	2 cut(s)	353, 407
HpyAV	CCTTC	2 cut(s)	153, 450
HpyCH4IV	ACGT	2 cut(s)	355, 405
HpyCH4V	TGCA	1 cut(s)	652
HpyF3I	CTNAG	2 cut(s)	51, 626
HpySE526I	ACGT	2 cut(s)	355, 405
Hsp92I	GRCGYC	1 cut(s)	405
Hsp92II	CATG	1 cut(s)	523
HspAI	GCGC	1 cut(s)	671
KroI	GCCGGC	7 cut(s)	134, 164, 194, 224, 254, 284, 314
KroNI	GCCGGC	7 cut(s)	136, 166, 196, 226, 256, 286, 316
KspI	CCGCGG	4 cut(s)	150, 180, 240, 270
Kzo9I	GATC	2 cut(s)	551, 568
LguI	GCTCTTC	1 cut(s)	639
LmnI	GCTCC	3 cut(s)	30, 48, 521
Lsp1109I	GCAGC	2 cut(s)	280, 286
LweI	GCATC	3 cut(s)	101, 513, 661
MaeI	CTAG	2 cut(s)	527, 533
MaeII	ACGT	2 cut(s)	355, 405
MalI	GATC	2 cut(s)	553, 570
MboI	GATC	2 cut(s)	551, 568
MboII	GAAGA	6 cut(s)	354, 384, 411, 443, 626, 647
MflI	RGATCY	1 cut(s)	568
MhlI	GDGCHC	1 cut(s)	634
MlsI	TGGCCA	1 cut(s)	479
MluCI	AATT	3 cut(s)	388, 467, 487
MluNI	TGGCCA	1 cut(s)	479
MlyI	GAGTC	4 cut(s)	148, 178, 208, 238
Mox20I	TGGCCA	1 cut(s)	479
MroNI	GCCGGC	7 cut(s)	134, 164, 194, 224, 254, 284, 314
MscI	TGGCCA	1 cut(s)	479
MseI	TTAA	1 cut(s)	461
Msp20I	TGGCCA	1 cut(s)	479
MspA1I	CMGCKG	4 cut(s)	149, 179, 239, 269
MspCI	CTTAAG	1 cut(s)	460
MspI	CCGG	9 cut(s)	89, 135, 165, 195, 225, 255, 285, 315, 396
MspR9I	CCNGG	1 cut(s)	414
MvaI	CCWGG	1 cut(s)	414
MvnI	CGCG	6 cut(s)	149, 179, 209, 239, 269, 348
NaeI	GCCGGC	7 cut(s)	136, 166, 196, 226, 256, 286, 316
NdeII	GATC	2 cut(s)	551, 568
NgoMIV	GCCGGC	7 cut(s)	134, 164, 194, 224, 254, 284, 314
NheI	GCTAGC	1 cut(s)	526
NlaIII	CATG	1 cut(s)	523
NsbI	TGCGCA	1 cut(s)	672
NspV	TTCGAA	1 cut(s)	454
PaqCI	CACCTGC	1 cut(s)	127
PciSI	GCTCTTC	1 cut(s)	639
PdiI	GCCGGC	7 cut(s)	136, 166, 196, 226, 256, 286, 316
PfeI	GAWTC	6 cut(s)	124, 274, 304, 359, 425, 502
PleI	GAGTC	4 cut(s)	148, 178, 208, 238
PmaCI	CACGTG	1 cut(s)	356
PmlI	CACGTG	1 cut(s)	356
PpsI	GAGTC	4 cut(s)	148, 178, 208, 238
Ppu21I	YACGTR	1 cut(s)	356
Psp6I	CCWGG	1 cut(s)	412
PspCI	CACGTG	1 cut(s)	356
PspGI	CCWGG	1 cut(s)	412
PsuI	RGATCY	1 cut(s)	568
SacII	CCGCGG	4 cut(s)	150, 180, 240, 270
SalI	GTCGAC	1 cut(s)	55
SapI	GCTCTTC	1 cut(s)	639
SaqAI	TTAA	1 cut(s)	461
Sau3AI	GATC	2 cut(s)	551, 568
SchI	GAGTC	4 cut(s)	148, 178, 208, 238
ScrFI	CCNGG	1 cut(s)	414
SduI	GDGCHC	1 cut(s)	634
SetI	ASST	5 cut(s)	121, 358, 408, 418, 461
SfaNI	GCATC	3 cut(s)	101, 513, 661
Sfr303I	CCGCGG	4 cut(s)	150, 180, 240, 270
SfuI	TTCGAA	1 cut(s)	454
SgrBI	CCGCGG	4 cut(s)	150, 180, 240, 270
SmlI	CTYRAG	1 cut(s)	460
SmoI	CTYRAG	1 cut(s)	460
Sse9I	AATT	3 cut(s)	388, 467, 487
SspMI	CTAG	2 cut(s)	527, 533
StyD4I	CCNGG	1 cut(s)	412
TaiI	ACGT	2 cut(s)	358, 408
TaqI	TCGA	3 cut(s)	56, 454, 620
TasI	AATT	3 cut(s)	388, 467, 487
TfiI	GAWTC	6 cut(s)	124, 274, 304, 359, 425, 502
Tru1I	TTAA	1 cut(s)	461
Tru9I	TTAA	1 cut(s)	461
TseI	GCWGC	2 cut(s)	293, 299
TspDTI	ATGAA	3 cut(s)	17, 432, 534
TspGWI	ACGGA	2 cut(s)	7, 581
Vha464I	CTTAAG	1 cut(s)	460
XapI	RAATTY	1 cut(s)	467
XmiI	GTMKAC	1 cut(s)	56
XspI	CTAG	2 cut(s)	527, 533
ZraI	GACGTC	1 cut(s)	406

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.