Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0015505

Physical Location & Seq

Genomic Coordinates Reverse (-)

91384146 .. 91386281

Gene Structure 2136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG531900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGACAACATCGTCGGCATCAACCTCTACGTGGGTGTCCACGACCTCTGTGTCTTCCTCAGGGAAGAGAATCCAGAGAGAAATGGTTGAGCTCAACATGGACCCACCTCCTGATTGCTCTGCTGGGCCCAAGGGTGACAATCTCTACCACTGGGTTGCCACCATCATTGGCCCTCCAGGAACACCATACCAAGGTGGCATATACTTCCTTGACATTACATTTCCTGGTGATTATCCATTTAAACCTCCAAAGGATGGTTGGAGTCCAGCTCTGACGATTACAAAGGTGCTACTAGCAATTCGGTCCATTTTCACAAAACCTGATCCTTATAATCCGCTTGTCCCTAGCATTGCTCATTTGTACTTGGCAGATAAAGCTAAACACGATGAACTAGCTTCTGAGTGGACAATGCGATTCGCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010099 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:2000026 GO:2000030

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

141

Amino Acids

15.5

Weight (kDa)

6.82

Isoelectric Point (pI)

27.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	23 - 84	2.8e-17	Ubiquitin-conjugating enzyme
UQ_con	PF00179	86 - 135	3.7e-07	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13550 AT3G13550
fragaria_vesca	FvH4_3g45321 FvH4_3g45321
malus_domestica	MD03G1006100.v1.1
prunus_persica	Prupe.6G005800_v2.0.a1
pyrus_communis	pycom03g00610
rosa_chinensis	RchiOBHm_Chr5g0083101
rosa_laevigata	RLG00000037011
rosa_rugosa	Rorug05G0482200 Rorug05G0482200
rosa_samantha	Rh5AG531900 Rh5BG559000 Rh5CG581900 Rh5DG567800
rosa_wichuraiana	Rw5G049650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	330
AasI	GACNNNNNNGTC	2 cut(s)	10, 49
AccB7I	CCANNNNNTGG	1 cut(s)	254
AciI	CCGC	1 cut(s)	335
AclWI	GGATC	1 cut(s)	317
AfaI	GTAC	1 cut(s)	362
AfiI	CCNNNNNNNGG	3 cut(s)	30, 191, 254
AjnI	CCWGG	2 cut(s)	175, 223
AluBI	AGCT	4 cut(s)	91, 269, 377, 395
AluI	AGCT	4 cut(s)	91, 269, 377, 395
Alw21I	GWGCWC	1 cut(s)	93
AlwI	GGATC	1 cut(s)	317
AoxI	GGCC	2 cut(s)	125, 169
ApaI	GGGCCC	1 cut(s)	129
AspS9I	GGNCC	5 cut(s)	100, 125, 126, 170, 303
AsuHPI	GGTGA	2 cut(s)	146, 239
AvaII	GGWCC	2 cut(s)	100, 303
AxyI	CCTNAGG	1 cut(s)	58
BaeGI	GKGCMC	1 cut(s)	129
BanII	GRGCYC	2 cut(s)	93, 129
BbsI	GAAGAC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	93
BccI	CCATC	2 cut(s)	170, 248
BciT130I	CCWGG	2 cut(s)	177, 225
BfaI	CTAG	3 cut(s)	293, 345, 392
Bme1390I	CCNGG	2 cut(s)	177, 225
Bme18I	GGWCC	2 cut(s)	100, 303
BmgT120I	GGNCC	5 cut(s)	100, 125, 126, 170, 303
BmiI	GGNNCC	2 cut(s)	102, 127
BmrFI	CCNGG	2 cut(s)	177, 225
BmrI	ACTGGG	1 cut(s)	160
BmsI	GCATC	1 cut(s)	26
BmuI	ACTGGG	1 cut(s)	160
BpiI	GAAGAC	1 cut(s)	45
BplI	GAGNNNNNCTC	2 cut(s)	253, 285
BpmI	CTGGAG	1 cut(s)	159
BsaAI	YACGTR	1 cut(s)	30
BsaJI	CCNNGG	2 cut(s)	129, 190
Bsc4I	CCNNNNNNNGG	3 cut(s)	30, 191, 254
Bse1I	ACTGG	1 cut(s)	155
Bse21I	CCTNAGG	1 cut(s)	58
Bse3DI	GCAATG	1 cut(s)	348
BseBI	CCWGG	2 cut(s)	177, 225
BseDI	CCNNGG	2 cut(s)	129, 190
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	3 cut(s)	30, 191, 254
BseMI	GCAATG	1 cut(s)	348
BseMII	CTCAG	2 cut(s)	72, 390
BseNI	ACTGG	1 cut(s)	155
BseSI	GKGCMC	1 cut(s)	129
BseYI	CCCAGC	1 cut(s)	122
BshFI	GGCC	2 cut(s)	127, 171
BsiHKAI	GWGCWC	1 cut(s)	93
BslFI	GGGAC	1 cut(s)	326
BslI	CCNNNNNNNGG	3 cut(s)	30, 191, 254
BsmFI	GGGAC	1 cut(s)	326
BsnI	GGCC	2 cut(s)	127, 171
Bsp120I	GGGCCC	1 cut(s)	125
Bsp1286I	GDGCHC	2 cut(s)	93, 129
Bsp143I	GATC	1 cut(s)	322
BspACI	CCGC	1 cut(s)	335
BspANI	GGCC	2 cut(s)	127, 171
BspCNI	CTCAG	2 cut(s)	71, 391
BspLI	GGNNCC	2 cut(s)	102, 127
BspPI	GGATC	1 cut(s)	317
BsrDI	GCAATG	1 cut(s)	348
BsrI	ACTGG	1 cut(s)	155
BssECI	CCNNGG	2 cut(s)	129, 190
BssMI	GATC	1 cut(s)	322
BssT1I	CCWWGG	2 cut(s)	129, 190
Bst2UI	CCWGG	2 cut(s)	177, 225
Bst6I	CTCTTC	1 cut(s)	59
BstBAI	YACGTR	1 cut(s)	30
BstDEI	CTNAG	2 cut(s)	58, 399
BstF5I	GGATG	1 cut(s)	259
BstKTI	GATC	1 cut(s)	325
BstMBI	GATC	1 cut(s)	322
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstNI	CCWGG	2 cut(s)	177, 225
BstSCI	CCNGG	2 cut(s)	175, 223
BstSLI	GKGCMC	1 cut(s)	129
BstV2I	GAAGAC	1 cut(s)	45
Bsu36I	CCTNAGG	1 cut(s)	58
BsuRI	GGCC	2 cut(s)	127, 171
BtsCI	GGATG	1 cut(s)	259
BtsIMutI	CAGTG	1 cut(s)	148
Cfr13I	GGNCC	5 cut(s)	100, 125, 126, 170, 303
Csp6I	GTAC	1 cut(s)	361
CspCI	CAANNNNNGTGG	2 cut(s)	148, 183
CviAII	CATG	1 cut(s)	97
CviJI	RGCY	6 cut(s)	91, 127, 171, 269, 377, 395
CviKI_1	RGCY	6 cut(s)	91, 127, 171, 269, 377, 395
CviQI	GTAC	1 cut(s)	361
DdeI	CTNAG	2 cut(s)	58, 399
DpnI	GATC	1 cut(s)	324
DpnII	GATC	1 cut(s)	322
DraI	TTTAAA	1 cut(s)	241
DrdI	GACNNNNNNGTC	2 cut(s)	10, 49
DseDI	GACNNNNNNGTC	2 cut(s)	10, 49
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
Ecl136II	GAGCTC	1 cut(s)	91
Eco130I	CCWWGG	2 cut(s)	129, 190
Eco24I	GRGCYC	2 cut(s)	93, 129
Eco47I	GGWCC	2 cut(s)	100, 303
Eco53kI	GAGCTC	1 cut(s)	91
Eco81I	CCTNAGG	1 cut(s)	58
EcoICRI	GAGCTC	1 cut(s)	91
EcoRII	CCWGG	2 cut(s)	175, 223
EcoT14I	CCWWGG	2 cut(s)	129, 190
EcoT38I	GRGCYC	2 cut(s)	93, 129
ErhI	CCWWGG	2 cut(s)	129, 190
FaeI	CATG	1 cut(s)	100
FaiI	YATR	5 cut(s)	98, 187, 200, 202, 330
FaqI	GGGAC	1 cut(s)	326
FatI	CATG	1 cut(s)	96
FokI	GGATG	1 cut(s)	266
FriOI	GRGCYC	2 cut(s)	93, 129
FspBI	CTAG	3 cut(s)	293, 345, 392
GsaI	CCCAGC	1 cut(s)	126
GsuI	CTGGAG	1 cut(s)	159
HaeIII	GGCC	2 cut(s)	127, 171
Hin1II	CATG	1 cut(s)	100
HinfI	GANTC	3 cut(s)	69, 262, 414
HphI	GGTGA	2 cut(s)	146, 239
Hpy166II	GTNNAC	2 cut(s)	39, 405
Hpy188I	TCNGA	2 cut(s)	273, 400
Hpy188III	TCNNGA	2 cut(s)	73, 110
Hpy8I	GTNNAC	2 cut(s)	39, 405
Hpy99I	CGWCG	1 cut(s)	16
HpyCH4IV	ACGT	1 cut(s)	29
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
HpyF3I	CTNAG	2 cut(s)	58, 399
HpySE526I	ACGT	1 cut(s)	29
Hsp92II	CATG	1 cut(s)	100
Kzo9I	GATC	1 cut(s)	322
LweI	GCATC	1 cut(s)	26
MaeI	CTAG	3 cut(s)	293, 345, 392
MaeII	ACGT	1 cut(s)	29
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	1 cut(s)	324
MboI	GATC	1 cut(s)	322
MboII	GAAGA	2 cut(s)	45, 76
MhlI	GDGCHC	2 cut(s)	93, 129
MluCI	AATT	1 cut(s)	297
MlyI	GAGTC	1 cut(s)	271
MmeI	TCCRAC	1 cut(s)	239
MnlI	CCTC	6 cut(s)	34, 55, 67, 117, 183, 255
MseI	TTAA	1 cut(s)	240
MspR9I	CCNGG	2 cut(s)	177, 225
MvaI	CCWGG	2 cut(s)	177, 225
MwoI	GCNNNNNNNGC	1 cut(s)	374
NdeII	GATC	1 cut(s)	322
NlaIII	CATG	1 cut(s)	100
NlaIV	GGNNCC	2 cut(s)	102, 127
NmuCI	GTSAC	1 cut(s)	134
PfeI	GAWTC	2 cut(s)	69, 414
PflMI	CCANNNNNTGG	1 cut(s)	254
PfoI	TCCNGGA	1 cut(s)	175
PleI	GAGTC	1 cut(s)	270
PpsI	GAGTC	1 cut(s)	270
Ppu21I	YACGTR	1 cut(s)	30
PsiI	TTATAA	1 cut(s)	330
Psp124BI	GAGCTC	1 cut(s)	93
Psp6I	CCWGG	2 cut(s)	175, 223
PspFI	CCCAGC	1 cut(s)	122
PspGI	CCWGG	2 cut(s)	175, 223
PspN4I	GGNNCC	2 cut(s)	102, 127
PspOMI	GGGCCC	1 cut(s)	125
PspPI	GGNCC	5 cut(s)	100, 125, 126, 170, 303
RsaI	GTAC	1 cut(s)	362
RsaNI	GTAC	1 cut(s)	361
SacI	GAGCTC	1 cut(s)	93
SaqAI	TTAA	1 cut(s)	240
Sau3AI	GATC	1 cut(s)	322
Sau96I	GGNCC	5 cut(s)	100, 125, 126, 170, 303
SchI	GAGTC	1 cut(s)	271
ScrFI	CCNGG	2 cut(s)	177, 225
SduI	GDGCHC	2 cut(s)	93, 129
SfaNI	GCATC	1 cut(s)	26
SinI	GGWCC	2 cut(s)	100, 303
Sse9I	AATT	1 cut(s)	297
SsiI	CCGC	1 cut(s)	335
SspMI	CTAG	3 cut(s)	293, 345, 392
SstI	GAGCTC	1 cut(s)	93
StyD4I	CCNGG	2 cut(s)	175, 223
StyI	CCWWGG	2 cut(s)	129, 190
TaiI	ACGT	1 cut(s)	32
TaqII	GACCGA	1 cut(s)	291
TasI	AATT	1 cut(s)	297
TatI	WGTACW	1 cut(s)	360
TfiI	GAWTC	2 cut(s)	69, 414
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	1 cut(s)	155
TseFI	GTSAC	1 cut(s)	134
Tsp45I	GTSAC	1 cut(s)	134
TspDTI	ATGAA	1 cut(s)	402
TspRI	CASTG	1 cut(s)	155
Van91I	CCANNNNNTGG	1 cut(s)	254
VpaK11BI	GGWCC	2 cut(s)	100, 303
XcmI	CCANNNNNNNNNTGG	1 cut(s)	255
XspI	CTAG	3 cut(s)	293, 345, 392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.