Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0015505

Physical Location & Seq

Genomic Coordinates Forward (+)

531122 .. 533822

Gene Structure 2701 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G005800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGACGAAGCCAGCAGCAGGATCCTTAGCAGGCATGTTGACGATGACAAAGCCGTCAGCAGGATCCTTAGCATCAAGATCGACGTGGGTATCCACCACCTCTGTGTCGTCCTCAGGGAAGAGGATTCAGAGAGAGATGGTAGAGCTCAACCTGGACCCACCTCCTGGCTGCTGTGCGGGGCCCAAGGGTGACAATCTCTACAACTGGGTTGCAACCATCATCGGCCCCCCAGGAACACCATACCAAGGTGGCATATATTTCCTTGACATTACATTTCCCTATGATTATCCATTTCAACCTCCAAAGGTTGTATTCAAAACTCGAATCTATCATTGCAATGTTGATTCTGCTGGAAATGTAAGTTTGGAAATCTTAAAGGACAGTTGGAGTCCAGCTCTAACAATTACAAAGGTTCTACAAGCACTTCAATCCATTTTCACAAAGCCTGATCCTTATAATCCACTTGTCCCTGGTATTGCCCATTTGTACTTGCAAGATGAAGCTAAACACGCCGAGCTTGCTGCTGAGTGGACGCTGCGATTTGCTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010099 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:2000026 GO:2000030

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

184

Amino Acids

19.93

Weight (kDa)

8.39

Isoelectric Point (pI)

36.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13550 AT3G13550
fragaria_vesca	FvH4_3g45321 FvH4_3g45321
malus_domestica	MD03G1006100.v1.1
prunus_persica	Prupe.6G005800_v2.0.a1
pyrus_communis	pycom03g00610
rosa_chinensis	RchiOBHm_Chr5g0083101
rosa_laevigata	RLG00000037011
rosa_rugosa	Rorug05G0482200 Rorug05G0482200
rosa_samantha	Rh5AG531900 Rh5BG559000 Rh5CG581900 Rh5DG567800
rosa_wichuraiana	Rw5G049650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	456
AasI	GACNNNNNNGTC	1 cut(s)	52
AccB7I	CCANNNNNTGG	1 cut(s)	164
AciI	CCGC	1 cut(s)	176
AclWI	GGATC	5 cut(s)	15, 28, 57, 70, 443
AfaI	GTAC	1 cut(s)	488
AfiI	CCNNNNNNNGG	4 cut(s)	17, 59, 164, 245
AgsI	TTSAA	3 cut(s)	296, 316, 428
AjiI	CACGTC	1 cut(s)	84
AjnI	CCWGG	4 cut(s)	150, 163, 229, 469
AleI	CACNNNNGTG	1 cut(s)	101
AluBI	AGCT	4 cut(s)	145, 395, 503, 517
AluI	AGCT	4 cut(s)	145, 395, 503, 517
Alw21I	GWGCWC	1 cut(s)	147
AlwI	GGATC	5 cut(s)	15, 28, 57, 70, 443
AoxI	GGCC	2 cut(s)	179, 223
ApaI	GGGCCC	1 cut(s)	183
ApeKI	GCWGC	4 cut(s)	14, 168, 521, 535
AspS9I	GGNCC	4 cut(s)	154, 179, 180, 224
AsuHPI	GGTGA	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	154
AxyI	CCTNAGG	1 cut(s)	112
BaeGI	GKGCMC	1 cut(s)	183
BaeI	ACNNNNGTAYC	2 cut(s)	72, 105
BamHI	GGATCC	2 cut(s)	20, 62
BanII	GRGCYC	2 cut(s)	147, 183
Bbv12I	GWGCWC	1 cut(s)	147
BbvI	GCAGC	4 cut(s)	26, 155, 508, 522
BccI	CCATC	2 cut(s)	130, 224
BceAI	ACGGC	1 cut(s)	37
BcgI	CGANNNNNNTGC	4 cut(s)	60, 94, 503, 537
BciT130I	CCWGG	4 cut(s)	152, 165, 231, 471
BciVI	GTATCC	1 cut(s)	100
BfuI	GTATCC	1 cut(s)	100
BisI	GCNGC	4 cut(s)	15, 169, 522, 536
BlsI	GCNGC	4 cut(s)	16, 170, 523, 537
Bme1390I	CCNGG	4 cut(s)	152, 165, 231, 471
Bme18I	GGWCC	1 cut(s)	154
BmgBI	CACGTC	1 cut(s)	84
BmgT120I	GGNCC	4 cut(s)	154, 179, 180, 224
BmiI	GGNNCC	6 cut(s)	22, 64, 156, 180, 181, 226
BmrFI	CCNGG	4 cut(s)	152, 165, 231, 471
BmrI	ACTGGG	1 cut(s)	214
BmsI	GCATC	1 cut(s)	80
BmuI	ACTGGG	1 cut(s)	214
BplI	GAGNNNNNCTC	2 cut(s)	379, 411
Bpu10I	CCTNAGC	2 cut(s)	25, 67
BsaJI	CCNNGG	4 cut(s)	183, 229, 244, 469
Bsc4I	CCNNNNNNNGG	4 cut(s)	17, 59, 164, 245
Bse1I	ACTGG	1 cut(s)	209
Bse21I	CCTNAGG	1 cut(s)	112
Bse3DI	GCAATG	2 cut(s)	331, 343
BseBI	CCWGG	4 cut(s)	152, 165, 231, 471
BseDI	CCNNGG	4 cut(s)	183, 229, 244, 469
BseLI	CCNNNNNNNGG	4 cut(s)	17, 59, 164, 245
BseMI	GCAATG	2 cut(s)	331, 343
BseMII	CTCAG	2 cut(s)	126, 516
BseNI	ACTGG	1 cut(s)	209
BseSI	GKGCMC	1 cut(s)	183
BseXI	GCAGC	4 cut(s)	26, 155, 508, 522
BshFI	GGCC	2 cut(s)	181, 225
BsiHKAI	GWGCWC	1 cut(s)	147
BslFI	GGGAC	1 cut(s)	452
BslI	CCNNNNNNNGG	4 cut(s)	17, 59, 164, 245
BsmFI	GGGAC	1 cut(s)	452
BsnI	GGCC	2 cut(s)	181, 225
Bsp120I	GGGCCC	1 cut(s)	179
Bsp1286I	GDGCHC	2 cut(s)	147, 183
Bsp143I	GATC	4 cut(s)	20, 62, 77, 448
BspACI	CCGC	1 cut(s)	176
BspANI	GGCC	2 cut(s)	181, 225
BspCNI	CTCAG	2 cut(s)	125, 517
BspLI	GGNNCC	6 cut(s)	22, 64, 156, 180, 181, 226
BspPI	GGATC	5 cut(s)	15, 28, 57, 70, 443
BsrDI	GCAATG	2 cut(s)	331, 343
BsrI	ACTGG	1 cut(s)	209
BssECI	CCNNGG	4 cut(s)	183, 229, 244, 469
BssMI	GATC	4 cut(s)	20, 62, 77, 448
BssT1I	CCWWGG	2 cut(s)	183, 244
Bst2UI	CCWGG	4 cut(s)	152, 165, 231, 471
Bst4CI	ACNGT	1 cut(s)	383
Bst6I	CTCTTC	1 cut(s)	113
BstC8I	GCNNGC	3 cut(s)	12, 31, 519
BstDEI	CTNAG	5 cut(s)	25, 67, 112, 525, 546
BstKTI	GATC	4 cut(s)	23, 65, 80, 451
BstMBI	GATC	4 cut(s)	20, 62, 77, 448
BstMWI	GCNNNNNNNGC	2 cut(s)	509, 518
BstNI	CCWGG	4 cut(s)	152, 165, 231, 471
BstNSI	RCATGY	1 cut(s)	37
BstSCI	CCNGG	4 cut(s)	150, 163, 229, 469
BstSLI	GKGCMC	1 cut(s)	183
BstV1I	GCAGC	4 cut(s)	26, 155, 508, 522
BstX2I	RGATCY	2 cut(s)	20, 62
BstYI	RGATCY	2 cut(s)	20, 62
Bsu36I	CCTNAGG	1 cut(s)	112
BsuI	GTATCC	1 cut(s)	100
BsuRI	GGCC	2 cut(s)	181, 225
BtrI	CACGTC	1 cut(s)	84
Cac8I	GCNNGC	3 cut(s)	12, 31, 519
Cfr13I	GGNCC	4 cut(s)	154, 179, 180, 224
CseI	GACGC	1 cut(s)	541
Csp6I	GTAC	1 cut(s)	487
CviAII	CATG	1 cut(s)	34
CviQI	GTAC	1 cut(s)	487
DdeI	CTNAG	5 cut(s)	25, 67, 112, 525, 546
DpnI	GATC	4 cut(s)	22, 64, 79, 450
DpnII	GATC	4 cut(s)	20, 62, 77, 448
DrdI	GACNNNNNNGTC	1 cut(s)	52
DseDI	GACNNNNNNGTC	1 cut(s)	52
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Ecl136II	GAGCTC	1 cut(s)	145
Eco130I	CCWWGG	2 cut(s)	183, 244
Eco24I	GRGCYC	2 cut(s)	147, 183
Eco47I	GGWCC	1 cut(s)	154
Eco53kI	GAGCTC	1 cut(s)	145
Eco81I	CCTNAGG	1 cut(s)	112
EcoICRI	GAGCTC	1 cut(s)	145
EcoO109I	RGGNCCY	1 cut(s)	179
EcoRII	CCWGG	4 cut(s)	150, 163, 229, 469
EcoT14I	CCWWGG	2 cut(s)	183, 244
EcoT38I	GRGCYC	2 cut(s)	147, 183
ErhI	CCWWGG	2 cut(s)	183, 244
FaeI	CATG	1 cut(s)	37
FaiI	YATR	6 cut(s)	35, 241, 254, 256, 282, 456
FaqI	GGGAC	1 cut(s)	452
FatI	CATG	1 cut(s)	33
FauI	CCCGC	1 cut(s)	169
Fnu4HI	GCNGC	4 cut(s)	15, 169, 522, 536
FriOI	GRGCYC	2 cut(s)	147, 183
Fsp4HI	GCNGC	4 cut(s)	15, 169, 522, 536
GluI	GCNGC	4 cut(s)	15, 169, 522, 536
HaeIII	GGCC	2 cut(s)	181, 225
HgaI	GACGC	1 cut(s)	541
Hin1II	CATG	1 cut(s)	37
HincII	GTYRAC	1 cut(s)	39
HindII	GTYRAC	1 cut(s)	39
HinfI	GANTC	4 cut(s)	124, 324, 344, 388
HphI	GGTGA	1 cut(s)	200
Hpy166II	GTNNAC	2 cut(s)	39, 531
Hpy188I	TCNGA	1 cut(s)	129
Hpy188III	TCNNGA	1 cut(s)	75
Hpy8I	GTNNAC	2 cut(s)	39, 531
Hpy99I	CGWCG	1 cut(s)	85
HpyCH4III	ACNGT	1 cut(s)	383
HpyCH4IV	ACGT	1 cut(s)	83
HpyCH4V	TGCA	3 cut(s)	212, 336, 493
HpyF10VI	GCNNNNNNNGC	2 cut(s)	509, 518
HpyF3I	CTNAG	5 cut(s)	25, 67, 112, 525, 546
HpySE526I	ACGT	1 cut(s)	83
Hsp92II	CATG	1 cut(s)	37
Kzo9I	GATC	4 cut(s)	20, 62, 77, 448
Lsp1109I	GCAGC	4 cut(s)	26, 155, 508, 522
LweI	GCATC	1 cut(s)	80
MaeII	ACGT	1 cut(s)	83
MaeIII	GTNAC	1 cut(s)	188
MalI	GATC	4 cut(s)	22, 64, 79, 450
MboI	GATC	4 cut(s)	20, 62, 77, 448
MboII	GAAGA	1 cut(s)	130
MflI	RGATCY	2 cut(s)	20, 62
MhlI	GDGCHC	2 cut(s)	147, 183
MluCI	AATT	1 cut(s)	402
MlyI	GAGTC	1 cut(s)	397
MmeI	TCCRAC	1 cut(s)	365
MnlI	CCTC	5 cut(s)	109, 114, 121, 171, 309
MseI	TTAA	1 cut(s)	374
MslI	CAYNNNNRTG	2 cut(s)	101, 336
MspR9I	CCNGG	4 cut(s)	152, 165, 231, 471
MvaI	CCWGG	4 cut(s)	152, 165, 231, 471
MwoI	GCNNNNNNNGC	2 cut(s)	509, 518
NdeII	GATC	4 cut(s)	20, 62, 77, 448
NlaIII	CATG	1 cut(s)	37
NlaIV	GGNNCC	6 cut(s)	22, 64, 156, 180, 181, 226
NmeAIII	GCCGAG	1 cut(s)	538
NmuCI	GTSAC	1 cut(s)	188
NspI	RCATGY	1 cut(s)	37
OliI	CACNNNNGTG	1 cut(s)	101
PfeI	GAWTC	3 cut(s)	124, 324, 344
PflMI	CCANNNNNTGG	1 cut(s)	164
PkrI	GCNGC	4 cut(s)	16, 170, 523, 537
PleI	GAGTC	1 cut(s)	396
PpsI	GAGTC	1 cut(s)	396
PsiI	TTATAA	1 cut(s)	456
Psp124BI	GAGCTC	1 cut(s)	147
Psp6I	CCWGG	4 cut(s)	150, 163, 229, 469
PspGI	CCWGG	4 cut(s)	150, 163, 229, 469
PspN4I	GGNNCC	6 cut(s)	22, 64, 156, 180, 181, 226
PspOMI	GGGCCC	1 cut(s)	179
PspPI	GGNCC	4 cut(s)	154, 179, 180, 224
PsuI	RGATCY	2 cut(s)	20, 62
RsaI	GTAC	1 cut(s)	488
RsaNI	GTAC	1 cut(s)	487
RseI	CAYNNNNRTG	2 cut(s)	101, 336
SacI	GAGCTC	1 cut(s)	147
SaqAI	TTAA	1 cut(s)	374
SatI	GCNGC	4 cut(s)	15, 169, 522, 536
Sau3AI	GATC	4 cut(s)	20, 62, 77, 448
Sau96I	GGNCC	4 cut(s)	154, 179, 180, 224
SchI	GAGTC	1 cut(s)	397
ScrFI	CCNGG	4 cut(s)	152, 165, 231, 471
SduI	GDGCHC	2 cut(s)	147, 183
SfaNI	GCATC	1 cut(s)	80
SinI	GGWCC	1 cut(s)	154
SmiMI	CAYNNNNRTG	2 cut(s)	101, 336
Sse9I	AATT	1 cut(s)	402
SsiI	CCGC	1 cut(s)	176
SstI	GAGCTC	1 cut(s)	147
StyD4I	CCNGG	4 cut(s)	150, 163, 229, 469
StyI	CCWWGG	2 cut(s)	183, 244
TaaI	ACNGT	1 cut(s)	383
TaiI	ACGT	1 cut(s)	86
TaqI	TCGA	2 cut(s)	80, 322
TasI	AATT	1 cut(s)	402
TatI	WGTACW	1 cut(s)	486
TfiI	GAWTC	3 cut(s)	124, 324, 344
Tru1I	TTAA	1 cut(s)	374
Tru9I	TTAA	1 cut(s)	374
TseFI	GTSAC	1 cut(s)	188
TseI	GCWGC	4 cut(s)	14, 168, 521, 535
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	1 cut(s)	513
Van91I	CCANNNNNTGG	1 cut(s)	164
VpaK11BI	GGWCC	1 cut(s)	154
XceI	RCATGY	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.