Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0015505

Physical Location & Seq

Genomic Coordinates Forward (+)

499234 .. 501496

Gene Structure 2263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g00610.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGACGACACCGTCAGCACCGTCGTTGGCATCATCGTCGAGGTGGGCGTCGACGACCTCAGTGTCGTCCTCAGGGAAGAGGATTCATAGAGAAATGGTGGAGCTTAACATCGACCCACCTCCCGACTGCTGCGCTGGGCCCAAGGGCGACAATCTCTACCACTGGATCGCCACCGTTTTTGGCCCCCCAGGAACACCTTACCACGGTGGCATATATTTCCTTGACATTACGTTTCCGAGTGACTATCCGTTTAAACCTCCAAAGGTTGTATTCACAACTCGAATTTATCATTGCAATGTTGATTCTAACGGCAATCTAAGCCTGGAAATGTTAAAGGATAGTTGGAGTCCAGCTCTAACAATAACCAAGTTGCTACTAGCCATCCGATCCATCTTCACAAGACCTGATCCTTATAATCCCCTTGTCCCCAGCATTGCCCGTTTGTACTTGGAAGATAAAGCTAAATATGATGAGCTTGCTTCTGAGTGGACGCTGCGATTTGCTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010099 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:2000026 GO:2000030

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

170

Amino Acids

18.87

Weight (kDa)

7.72

Isoelectric Point (pI)

44.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13550 AT3G13550
fragaria_vesca	FvH4_3g45321 FvH4_3g45321
malus_domestica	MD03G1006100.v1.1
prunus_persica	Prupe.6G005800_v2.0.a1
pyrus_communis	pycom03g00610
rosa_chinensis	RchiOBHm_Chr5g0083101
rosa_laevigata	RLG00000037011
rosa_rugosa	Rorug05G0482200 Rorug05G0482200
rosa_samantha	Rh5AG531900 Rh5BG559000 Rh5CG581900 Rh5DG567800
rosa_wichuraiana	Rw5G049650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	414
AasI	GACNNNNNNGTC	2 cut(s)	10, 61
AccI	GTMKAC	1 cut(s)	50
AclWI	GGATC	3 cut(s)	173, 381, 401
AcsI	RAATTY	1 cut(s)	282
AcyI	GRCGYC	1 cut(s)	47
AfaI	GTAC	1 cut(s)	446
AfiI	CCNNNNNNNGG	1 cut(s)	203
AjnI	CCWGG	2 cut(s)	187, 321
AluBI	AGCT	4 cut(s)	103, 353, 461, 475
AluI	AGCT	4 cut(s)	103, 353, 461, 475
AlwI	GGATC	3 cut(s)	173, 381, 401
AoxI	GGCC	2 cut(s)	137, 181
ApaI	GGGCCC	1 cut(s)	141
ApeKI	GCWGC	2 cut(s)	129, 493
ApoI	RAATTY	1 cut(s)	282
AspLEI	GCGC	1 cut(s)	134
AspS9I	GGNCC	3 cut(s)	137, 138, 182
AxyI	CCTNAGG	1 cut(s)	70
BaeGI	GKGCMC	1 cut(s)	141
BanII	GRGCYC	1 cut(s)	141
BbvI	GCAGC	2 cut(s)	116, 480
BccI	CCATC	2 cut(s)	389, 398
BceAI	ACGGC	1 cut(s)	325
BcgI	CGANNNNNNTGC	2 cut(s)	18, 52
BciT130I	CCWGG	2 cut(s)	189, 323
BfaI	CTAG	1 cut(s)	377
BisI	GCNGC	2 cut(s)	130, 494
BlsI	GCNGC	2 cut(s)	131, 495
Bme1390I	CCNGG	2 cut(s)	189, 323
BmgT120I	GGNCC	3 cut(s)	137, 138, 182
BmiI	GGNNCC	2 cut(s)	139, 184
BmrFI	CCNGG	2 cut(s)	189, 323
BmsI	GCATC	1 cut(s)	38
BplI	GAGNNNNNCTC	2 cut(s)	337, 369
BsaHI	GRCGYC	1 cut(s)	47
BsaJI	CCNNGG	3 cut(s)	141, 187, 202
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse1I	ACTGG	1 cut(s)	167
Bse21I	CCTNAGG	1 cut(s)	70
Bse3DI	GCAATG	3 cut(s)	289, 301, 432
BseBI	CCWGG	2 cut(s)	189, 323
BseDI	CCNNGG	3 cut(s)	141, 187, 202
BseGI	GGATG	1 cut(s)	381
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMI	GCAATG	3 cut(s)	289, 301, 432
BseMII	CTCAG	3 cut(s)	72, 84, 474
BseNI	ACTGG	1 cut(s)	167
BseSI	GKGCMC	1 cut(s)	141
BseXI	GCAGC	2 cut(s)	116, 480
BseYI	CCCAGC	2 cut(s)	134, 428
BshFI	GGCC	2 cut(s)	139, 183
BslFI	GGGAC	1 cut(s)	410
BslI	CCNNNNNNNGG	1 cut(s)	203
BsmFI	GGGAC	1 cut(s)	410
BsnI	GGCC	2 cut(s)	139, 183
Bsp120I	GGGCCC	1 cut(s)	137
Bsp1286I	GDGCHC	1 cut(s)	141
Bsp143I	GATC	3 cut(s)	165, 386, 406
BspANI	GGCC	2 cut(s)	139, 183
BspCNI	CTCAG	3 cut(s)	71, 83, 475
BspLI	GGNNCC	2 cut(s)	139, 184
BspPI	GGATC	3 cut(s)	173, 381, 401
BsrDI	GCAATG	3 cut(s)	289, 301, 432
BsrI	ACTGG	1 cut(s)	167
BssECI	CCNNGG	3 cut(s)	141, 187, 202
BssMI	GATC	3 cut(s)	165, 386, 406
BssNI	GRCGYC	1 cut(s)	47
BssT1I	CCWWGG	1 cut(s)	141
Bst2UI	CCWGG	2 cut(s)	189, 323
Bst4CI	ACNGT	4 cut(s)	12, 21, 175, 206
Bst6I	CTCTTC	1 cut(s)	71
BstACI	GRCGYC	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	477
BstDEI	CTNAG	5 cut(s)	58, 70, 317, 483, 504
BstDSI	CCRYGG	1 cut(s)	202
BstF5I	GGATG	1 cut(s)	381
BstHHI	GCGC	1 cut(s)	134
BstKTI	GATC	3 cut(s)	168, 389, 409
BstMBI	GATC	3 cut(s)	165, 386, 406
BstMWI	GCNNNNNNNGC	1 cut(s)	318
BstNI	CCWGG	2 cut(s)	189, 323
BstSCI	CCNGG	2 cut(s)	187, 321
BstSLI	GKGCMC	1 cut(s)	141
BstV1I	GCAGC	2 cut(s)	116, 480
Bsu36I	CCTNAGG	1 cut(s)	70
BsuRI	GGCC	2 cut(s)	139, 183
BtgI	CCRYGG	1 cut(s)	202
BtsCI	GGATG	1 cut(s)	381
BtsIMutI	CAGTG	2 cut(s)	66, 160
Cac8I	GCNNGC	1 cut(s)	477
CfoI	GCGC	1 cut(s)	134
Cfr13I	GGNCC	3 cut(s)	137, 138, 182
CseI	GACGC	2 cut(s)	36, 499
Csp6I	GTAC	1 cut(s)	445
CspCI	CAANNNNNGTGG	2 cut(s)	160, 195
CviJI	RGCY	8 cut(s)	103, 139, 183, 321, 353, 380, 461, 475
CviKI_1	RGCY	8 cut(s)	103, 139, 183, 321, 353, 380, 461, 475
CviQI	GTAC	1 cut(s)	445
DdeI	CTNAG	5 cut(s)	58, 70, 317, 483, 504
DpnI	GATC	3 cut(s)	167, 388, 408
DpnII	GATC	3 cut(s)	165, 386, 406
DraI	TTTAAA	1 cut(s)	253
DrdI	GACNNNNNNGTC	2 cut(s)	10, 61
DseDI	GACNNNNNNGTC	2 cut(s)	10, 61
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
Eco130I	CCWWGG	1 cut(s)	141
Eco24I	GRGCYC	1 cut(s)	141
Eco81I	CCTNAGG	1 cut(s)	70
EcoRII	CCWGG	2 cut(s)	187, 321
EcoT14I	CCWWGG	1 cut(s)	141
EcoT38I	GRGCYC	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	141
FaiI	YATR	5 cut(s)	87, 212, 214, 414, 468
FaqI	GGGAC	1 cut(s)	410
FblI	GTMKAC	1 cut(s)	50
Fnu4HI	GCNGC	2 cut(s)	130, 494
FokI	GGATG	1 cut(s)	368
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	2 cut(s)	130, 494
FspBI	CTAG	1 cut(s)	377
GlaI	GCGC	1 cut(s)	133
GluI	GCNGC	2 cut(s)	130, 494
GsaI	CCCAGC	2 cut(s)	138, 432
HaeIII	GGCC	2 cut(s)	139, 183
HgaI	GACGC	2 cut(s)	36, 499
HhaI	GCGC	1 cut(s)	134
Hin1I	GRCGYC	1 cut(s)	47
Hin6I	GCGC	1 cut(s)	132
HinP1I	GCGC	1 cut(s)	132
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HinfI	GANTC	3 cut(s)	82, 302, 346
Hpy166II	GTNNAC	2 cut(s)	51, 489
Hpy188I	TCNGA	3 cut(s)	237, 386, 484
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	2 cut(s)	51, 489
Hpy99I	CGWCG	4 cut(s)	25, 40, 52, 55
HpyCH4III	ACNGT	4 cut(s)	12, 21, 175, 206
HpyCH4IV	ACGT	1 cut(s)	230
HpyCH4V	TGCA	1 cut(s)	294
HpyF10VI	GCNNNNNNNGC	1 cut(s)	318
HpyF3I	CTNAG	5 cut(s)	58, 70, 317, 483, 504
HpySE526I	ACGT	1 cut(s)	230
Hsp92I	GRCGYC	1 cut(s)	47
HspAI	GCGC	1 cut(s)	132
Kzo9I	GATC	3 cut(s)	165, 386, 406
LmnI	GCTCC	1 cut(s)	100
Lsp1109I	GCAGC	2 cut(s)	116, 480
LweI	GCATC	1 cut(s)	38
MaeI	CTAG	1 cut(s)	377
MaeII	ACGT	1 cut(s)	230
MaeIII	GTNAC	1 cut(s)	239
MalI	GATC	3 cut(s)	167, 388, 408
MboI	GATC	3 cut(s)	165, 386, 406
MboII	GAAGA	3 cut(s)	88, 385, 464
MhlI	GDGCHC	1 cut(s)	141
MluCI	AATT	1 cut(s)	282
MlyI	GAGTC	1 cut(s)	355
MmeI	TCCRAC	1 cut(s)	323
MnlI	CCTC	6 cut(s)	33, 67, 72, 79, 129, 267
MseI	TTAA	3 cut(s)	105, 252, 332
MslI	CAYNNNNRTG	1 cut(s)	294
MspR9I	CCNGG	2 cut(s)	189, 323
MssI	GTTTAAAC	1 cut(s)	253
MvaI	CCWGG	2 cut(s)	189, 323
MwoI	GCNNNNNNNGC	1 cut(s)	318
NdeII	GATC	3 cut(s)	165, 386, 406
NlaIV	GGNNCC	2 cut(s)	139, 184
NmuCI	GTSAC	1 cut(s)	239
PcsI	WCGNNNNNNNCGW	1 cut(s)	44
PfeI	GAWTC	2 cut(s)	82, 302
PflFI	GACNNNGTC	1 cut(s)	10
PkrI	GCNGC	2 cut(s)	131, 495
PleI	GAGTC	1 cut(s)	354
PmeI	GTTTAAAC	1 cut(s)	253
PpsI	GAGTC	1 cut(s)	354
PsiI	TTATAA	1 cut(s)	414
Psp6I	CCWGG	2 cut(s)	187, 321
PspFI	CCCAGC	2 cut(s)	134, 428
PspGI	CCWGG	2 cut(s)	187, 321
PspN4I	GGNNCC	2 cut(s)	139, 184
PspOMI	GGGCCC	1 cut(s)	137
PspPI	GGNCC	3 cut(s)	137, 138, 182
PsyI	GACNNNGTC	1 cut(s)	10
RsaI	GTAC	1 cut(s)	446
RsaNI	GTAC	1 cut(s)	445
RseI	CAYNNNNRTG	1 cut(s)	294
SalI	GTCGAC	1 cut(s)	49
SaqAI	TTAA	3 cut(s)	105, 252, 332
SatI	GCNGC	2 cut(s)	130, 494
Sau3AI	GATC	3 cut(s)	165, 386, 406
Sau96I	GGNCC	3 cut(s)	137, 138, 182
SchI	GAGTC	1 cut(s)	355
ScrFI	CCNGG	2 cut(s)	189, 323
SduI	GDGCHC	1 cut(s)	141
SfaNI	GCATC	1 cut(s)	38
SgrDI	CGTCGACG	1 cut(s)	49
SmiMI	CAYNNNNRTG	1 cut(s)	294
Sse9I	AATT	1 cut(s)	282
SspMI	CTAG	1 cut(s)	377
StyD4I	CCNGG	2 cut(s)	187, 321
StyI	CCWWGG	1 cut(s)	141
TaaI	ACNGT	4 cut(s)	12, 21, 175, 206
TaiI	ACGT	1 cut(s)	233
TaqI	TCGA	4 cut(s)	38, 50, 111, 280
TasI	AATT	1 cut(s)	282
TatI	WGTACW	1 cut(s)	444
TfiI	GAWTC	2 cut(s)	82, 302
Tru1I	TTAA	3 cut(s)	105, 252, 332
Tru9I	TTAA	3 cut(s)	105, 252, 332
TscAI	CASTG	2 cut(s)	66, 167
TseFI	GTSAC	1 cut(s)	239
TseI	GCWGC	2 cut(s)	129, 493
Tsp45I	GTSAC	1 cut(s)	239
TspDTI	ATGAA	1 cut(s)	74
TspGWI	ACGGA	1 cut(s)	237
TspRI	CASTG	2 cut(s)	66, 167
Tth111I	GACNNNGTC	1 cut(s)	10
XapI	RAATTY	1 cut(s)	282
XmiI	GTMKAC	1 cut(s)	50
XspI	CTAG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.