Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0015505

Physical Location & Seq

Genomic Coordinates Reverse (-)

37622257 .. 37624709

Gene Structure 2453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g45321.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

ATGACAACATCGTCGGGATCAACGTGGGTGTCGACGACCTCTGTGTCTTCCTCAGGGAAGAGAATCCAGAGAGAAATGGTGGACCTCAACATGGACCCACCTCCAGATTGCTCAGCTGGGCCCAAAGGTGACAATCTCTACCACTGGGTTGCCACCATCATTGGCCCTCCAGGAACACCATACCAAGGTGGCATATACTTCCTTGACATCAAGTTTCCTACAGAATATCCGTTTAAACCTCCAGAGATCGTATTCAGGACTCGAGTCTTTCATTGCAACGTCGATTCTTCTGGTAATGTAAGTTTGGAAATCATAAAGGATGGTTGGAGTCCAGCTCGAACAATTACAAAGGTGCTCCTAGCAATTCGGTCCATTTTGACAAAACCTGATCCTTATAATCCGCTTGTCCCTAGCATTGCCCATTTGTACTTGGCAGATAAAGCTAAACACGATGAACTAGCTTCTGAGTGGACAACGCGATTTGCCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010099 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0048580 GO:0048583 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:2000026 GO:2000030

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

164

Amino Acids

18.07

Weight (kDa)

7.78

Isoelectric Point (pI)

28.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	21 - 157	4.4e-43	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0015505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13550 AT3G13550
fragaria_vesca	FvH4_3g45321 FvH4_3g45321
malus_domestica	MD03G1006100.v1.1
prunus_persica	Prupe.6G005800_v2.0.a1
pyrus_communis	pycom03g00610
rosa_chinensis	RchiOBHm_Chr5g0083101
rosa_laevigata	RLG00000037011
rosa_rugosa	Rorug05G0482200 Rorug05G0482200
rosa_samantha	Rh5AG531900 Rh5BG559000 Rh5CG581900 Rh5DG567800
rosa_wichuraiana	Rw5G049650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	396
AasI	GACNNNNNNGTC	2 cut(s)	10, 43
AccI	GTMKAC	1 cut(s)	32
AccII	CGCG	1 cut(s)	478
AciI	CCGC	1 cut(s)	401
AclWI	GGATC	2 cut(s)	25, 383
AfaI	GTAC	1 cut(s)	428
AfiI	CCNNNNNNNGG	2 cut(s)	91, 185
AjnI	CCWGG	1 cut(s)	169
AluBI	AGCT	4 cut(s)	116, 335, 443, 461
AluI	AGCT	4 cut(s)	116, 335, 443, 461
Alw21I	GWGCWC	1 cut(s)	357
AlwI	GGATC	2 cut(s)	25, 383
Ama87I	CYCGRG	1 cut(s)	261
AoxI	GGCC	2 cut(s)	119, 163
ApaI	GGGCCC	1 cut(s)	123
AspS9I	GGNCC	6 cut(s)	82, 94, 119, 120, 164, 369
AsuHPI	GGTGA	1 cut(s)	140
AvaI	CYCGRG	1 cut(s)	261
AvaII	GGWCC	3 cut(s)	82, 94, 369
AxyI	CCTNAGG	1 cut(s)	52
BaeGI	GKGCMC	1 cut(s)	123
BanII	GRGCYC	1 cut(s)	123
BbsI	GAAGAC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	357
BccI	CCATC	2 cut(s)	164, 314
BciT130I	CCWGG	1 cut(s)	171
BfaI	CTAG	3 cut(s)	359, 411, 458
BfmI	CTRYAG	1 cut(s)	219
BlpI	GCTNAGC	1 cut(s)	112
Bme1390I	CCNGG	1 cut(s)	171
Bme18I	GGWCC	3 cut(s)	82, 94, 369
BmeT110I	CYCGRG	1 cut(s)	261
BmgT120I	GGNCC	6 cut(s)	82, 94, 119, 120, 164, 369
BmiI	GGNNCC	2 cut(s)	96, 121
BmrFI	CCNGG	1 cut(s)	171
BmrI	ACTGGG	1 cut(s)	154
BmuI	ACTGGG	1 cut(s)	154
BoxI	GACNNNNGTC	1 cut(s)	263
BpiI	GAAGAC	1 cut(s)	39
BplI	GAGNNNNNCTC	2 cut(s)	319, 351
BpmI	CTGGAG	3 cut(s)	87, 153, 225
Bpu1102I	GCTNAGC	1 cut(s)	112
BsaJI	CCNNGG	1 cut(s)	184
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 185
Bse1I	ACTGG	1 cut(s)	149
Bse21I	CCTNAGG	1 cut(s)	52
Bse3DI	GCAATG	2 cut(s)	271, 414
BseBI	CCWGG	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	184
BseGI	GGATG	1 cut(s)	325
BseLI	CCNNNNNNNGG	2 cut(s)	91, 185
BseMI	GCAATG	2 cut(s)	271, 414
BseMII	CTCAG	3 cut(s)	66, 126, 456
BseNI	ACTGG	1 cut(s)	149
BseSI	GKGCMC	1 cut(s)	123
BseYI	CCCAGC	1 cut(s)	116
Bsh1236I	CGCG	1 cut(s)	478
BshFI	GGCC	2 cut(s)	121, 165
BsiHKAI	GWGCWC	1 cut(s)	357
BsiHKCI	CYCGRG	1 cut(s)	261
BslFI	GGGAC	1 cut(s)	392
BslI	CCNNNNNNNGG	2 cut(s)	91, 185
BsmFI	GGGAC	1 cut(s)	392
BsnI	GGCC	2 cut(s)	121, 165
BsoBI	CYCGRG	1 cut(s)	261
Bsp120I	GGGCCC	1 cut(s)	119
Bsp1286I	GDGCHC	2 cut(s)	123, 357
Bsp143I	GATC	3 cut(s)	17, 246, 388
Bsp1720I	GCTNAGC	1 cut(s)	112
BspACI	CCGC	1 cut(s)	401
BspANI	GGCC	2 cut(s)	121, 165
BspCNI	CTCAG	3 cut(s)	65, 125, 457
BspFNI	CGCG	1 cut(s)	478
BspLI	GGNNCC	2 cut(s)	96, 121
BspPI	GGATC	2 cut(s)	25, 383
BsrDI	GCAATG	2 cut(s)	271, 414
BsrI	ACTGG	1 cut(s)	149
BssECI	CCNNGG	1 cut(s)	184
BssMI	GATC	3 cut(s)	17, 246, 388
BssT1I	CCWWGG	1 cut(s)	184
Bst2UI	CCWGG	1 cut(s)	171
Bst6I	CTCTTC	1 cut(s)	53
BstDEI	CTNAG	3 cut(s)	52, 112, 465
BstF5I	GGATG	1 cut(s)	325
BstFNI	CGCG	1 cut(s)	478
BstKTI	GATC	3 cut(s)	20, 249, 391
BstMBI	GATC	3 cut(s)	17, 246, 388
BstMWI	GCNNNNNNNGC	1 cut(s)	440
BstNI	CCWGG	1 cut(s)	171
BstPAI	GACNNNNGTC	1 cut(s)	263
BstSCI	CCNGG	1 cut(s)	169
BstSFI	CTRYAG	1 cut(s)	219
BstSLI	GKGCMC	1 cut(s)	123
BstUI	CGCG	1 cut(s)	478
BstV2I	GAAGAC	1 cut(s)	39
Bsu36I	CCTNAGG	1 cut(s)	52
BsuRI	GGCC	2 cut(s)	121, 165
BtsCI	GGATG	1 cut(s)	325
BtsIMutI	CAGTG	1 cut(s)	142
Cfr13I	GGNCC	6 cut(s)	82, 94, 119, 120, 164, 369
Csp6I	GTAC	1 cut(s)	427
CspCI	CAANNNNNGTGG	2 cut(s)	142, 177
CviAII	CATG	1 cut(s)	91
CviJI	RGCY	6 cut(s)	116, 121, 165, 335, 443, 461
CviKI_1	RGCY	6 cut(s)	116, 121, 165, 335, 443, 461
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	3 cut(s)	52, 112, 465
DpnI	GATC	3 cut(s)	19, 248, 390
DpnII	GATC	3 cut(s)	17, 246, 388
DraI	TTTAAA	1 cut(s)	235
DrdI	GACNNNNNNGTC	2 cut(s)	10, 43
DseDI	GACNNNNNNGTC	2 cut(s)	10, 43
Eam1104I	CTCTTC	1 cut(s)	53
EarI	CTCTTC	1 cut(s)	53
Eco130I	CCWWGG	1 cut(s)	184
Eco24I	GRGCYC	1 cut(s)	123
Eco47I	GGWCC	3 cut(s)	82, 94, 369
Eco81I	CCTNAGG	1 cut(s)	52
Eco88I	CYCGRG	1 cut(s)	261
EcoRII	CCWGG	1 cut(s)	169
EcoT14I	CCWWGG	1 cut(s)	184
EcoT38I	GRGCYC	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	184
FaeI	CATG	1 cut(s)	94
FaiI	YATR	6 cut(s)	92, 181, 194, 196, 314, 396
FaqI	GGGAC	1 cut(s)	392
FatI	CATG	1 cut(s)	90
FblI	GTMKAC	1 cut(s)	32
FokI	GGATG	1 cut(s)	332
FriOI	GRGCYC	1 cut(s)	123
FspBI	CTAG	3 cut(s)	359, 411, 458
GsaI	CCCAGC	1 cut(s)	120
GsuI	CTGGAG	3 cut(s)	87, 153, 225
HaeIII	GGCC	2 cut(s)	121, 165
Hin1II	CATG	1 cut(s)	94
HincII	GTYRAC	1 cut(s)	33
HindII	GTYRAC	1 cut(s)	33
HinfI	GANTC	5 cut(s)	63, 259, 264, 284, 328
HphI	GGTGA	1 cut(s)	140
Hpy166II	GTNNAC	3 cut(s)	33, 82, 471
Hpy188I	TCNGA	1 cut(s)	466
Hpy188III	TCNNGA	5 cut(s)	15, 67, 104, 242, 256
Hpy8I	GTNNAC	3 cut(s)	33, 82, 471
Hpy99I	CGWCG	3 cut(s)	16, 37, 284
HpyCH4IV	ACGT	2 cut(s)	23, 279
HpyCH4V	TGCA	1 cut(s)	276
HpyF10VI	GCNNNNNNNGC	1 cut(s)	440
HpyF3I	CTNAG	3 cut(s)	52, 112, 465
HpySE526I	ACGT	2 cut(s)	23, 279
Hsp92II	CATG	1 cut(s)	94
Kzo9I	GATC	3 cut(s)	17, 246, 388
LmnI	GCTCC	1 cut(s)	360
MaeI	CTAG	3 cut(s)	359, 411, 458
MaeII	ACGT	2 cut(s)	23, 279
MaeIII	GTNAC	1 cut(s)	128
MalI	GATC	3 cut(s)	19, 248, 390
MboI	GATC	3 cut(s)	17, 246, 388
MboII	GAAGA	3 cut(s)	39, 70, 279
MhlI	GDGCHC	2 cut(s)	123, 357
MluCI	AATT	2 cut(s)	342, 363
MlyI	GAGTC	3 cut(s)	253, 273, 337
MmeI	TCCRAC	1 cut(s)	305
MnlI	CCTC	6 cut(s)	49, 61, 95, 111, 177, 249
MseI	TTAA	1 cut(s)	234
MspA1I	CMGCKG	1 cut(s)	116
MspR9I	CCNGG	1 cut(s)	171
MssI	GTTTAAAC	1 cut(s)	235
MvaI	CCWGG	1 cut(s)	171
MvnI	CGCG	1 cut(s)	478
MwoI	GCNNNNNNNGC	1 cut(s)	440
NdeII	GATC	3 cut(s)	17, 246, 388
NlaIII	CATG	1 cut(s)	94
NlaIV	GGNNCC	2 cut(s)	96, 121
NmuCI	GTSAC	1 cut(s)	128
PaeR7I	CTCGAG	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	2 cut(s)	20, 29
PfeI	GAWTC	2 cut(s)	63, 284
PfoI	TCCNGGA	1 cut(s)	169
PleI	GAGTC	3 cut(s)	253, 272, 336
PmeI	GTTTAAAC	1 cut(s)	235
PpsI	GAGTC	3 cut(s)	253, 272, 336
PshAI	GACNNNNGTC	1 cut(s)	263
PsiI	TTATAA	1 cut(s)	396
Psp6I	CCWGG	1 cut(s)	169
PspFI	CCCAGC	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	169
PspN4I	GGNNCC	2 cut(s)	96, 121
PspOMI	GGGCCC	1 cut(s)	119
PspPI	GGNCC	6 cut(s)	82, 94, 119, 120, 164, 369
PspXI	VCTCGAGB	1 cut(s)	261
PvuII	CAGCTG	1 cut(s)	116
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
SalI	GTCGAC	1 cut(s)	31
SaqAI	TTAA	1 cut(s)	234
Sau3AI	GATC	3 cut(s)	17, 246, 388
Sau96I	GGNCC	6 cut(s)	82, 94, 119, 120, 164, 369
SchI	GAGTC	3 cut(s)	253, 273, 337
ScrFI	CCNGG	1 cut(s)	171
SduI	GDGCHC	2 cut(s)	123, 357
SfcI	CTRYAG	1 cut(s)	219
Sfr274I	CTCGAG	1 cut(s)	261
SinI	GGWCC	3 cut(s)	82, 94, 369
SlaI	CTCGAG	1 cut(s)	261
SmlI	CTYRAG	1 cut(s)	261
SmoI	CTYRAG	1 cut(s)	261
Sse9I	AATT	2 cut(s)	342, 363
SsiI	CCGC	1 cut(s)	401
SspMI	CTAG	3 cut(s)	359, 411, 458
StyD4I	CCNGG	1 cut(s)	169
StyI	CCWWGG	1 cut(s)	184
TaiI	ACGT	2 cut(s)	26, 282
TaqI	TCGA	4 cut(s)	32, 262, 282, 337
TaqII	GACCGA	1 cut(s)	357
TasI	AATT	2 cut(s)	342, 363
TatI	WGTACW	1 cut(s)	426
TfiI	GAWTC	2 cut(s)	63, 284
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	1 cut(s)	149
TseFI	GTSAC	1 cut(s)	128
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	2 cut(s)	260, 468
TspGWI	ACGGA	1 cut(s)	219
TspRI	CASTG	1 cut(s)	149
VpaK11BI	GGWCC	3 cut(s)	82, 94, 369
XhoI	CTCGAG	1 cut(s)	261
XmiI	GTMKAC	1 cut(s)	32
XspI	CTAG	3 cut(s)	359, 411, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.