AT3G13780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014088
Physical Location & Seq
Forward (+)
4525033 .. 4526433
1401 bp
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UTR
Exon/CDS
Intron
AT3G13780.1

Sequence Viewer

Length: 930 bp
ATGAACACAAAAAGTCTCTGTGAAAGTGAAGAAACCACCATGGAAATCGAAGGCGAAGACGGCACGAAGCTCTTCCTGAAGACCGGAGTTAAGGATGTATTCGGAAGAGGAGCGGGATTCAACACCGAAGACCTAACAGTGTCACGCCGCCATGTTTCACTCGTATTCAAACCCGCCGCCGCCGGAACCGAACCGTCCGATATGGTTTCCTTCGAGGTTCTCGGGAGGAATCCAGTCTGGATAAGGGCCGTTGAAAAGGGCAAAAAGATTCAAACTTTGAGGAAACCCGAGACTGGAGAAATCGCCACCGGCGATCAATTTTGTGTATCGGGTAATCACCCCATTTGGTTCACTTTGAAGAGACGCGATGAAGTTATGGAGGAGCGAGCATTGGATCATGGTGAAATCGAATTGAATATTGATCCTGTTAAAGAGTTTGGATTTCTTGTGATTGGGAAAGAATTTGATCAGTATCCAAAGAGTAGGGTGCGTGACATAAAGCAATGGGAATGGTTTTTAGAGGATTCCACTAATGGAAATAGCGATGGTGATGAAGATGGAGATAAGAAGGGAAGGAAGGGATTAGGGAAAAAGAGAAGAAGGAAGAAAGGGAATGAGGATGATGATTGGAGTGTGGAAAGTGATGAAGATAAAGAGTTGATGGTGAAATCAAAAAGAGTTGTGACTCCTACTTACTCGACTAGATCCAAGAAGACGAAGAAAGATTCAAACGCTAGTAGTAGTAGTAGTAATGGTGCTCAAACTAAACAGCGTGGAAGAGCAGATGTCGAGGAAGAAGATGATGATGATGAAACATTGGGAGGTTTCATTGTTAGTGATGAAGAAGCTAAGTTAGAAGAAGAAGAAGAAGAAGAAGACGAATCAGATGTAGATGATGAAGAAGATGAAGACGAAGAAGAAGAAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

309

Amino Acids

35.02

Weight (kDa)

4.57

Isoelectric Point (pI)

53.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13780
fragaria_vesca FvH4_6g33680
malus_domestica MD09G1191700.v1.1
prunus_persica Prupe.3G047900_v2.0.a1
pyrus_communis pycom09g10820
rosa_chinensis RchiOBHm_Chr2g0143591
rosa_laevigata RLG00000020049
rosa_multiflora Rmu_sc0002412.1_g000003 Rmu_sc0002412.1_g000004 Rmu_sc0005308.1_g000005
rosa_roxburghii Rroxscaffold_2G00101630
rosa_rugosa Rorug02G0384000
rosa_samantha Rh2AG436000 Rh2BG443600 Rh2CG422100 Rh2DG454000
rosa_wichuraiana Rw2G035530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 113
AccII CGCG 1 cut(s) 366
AciI CCGC 5 cut(s) 113, 148, 174, 177, 180
AclWI GGATC 3 cut(s) 402, 416, 699
AcsI RAATTY 1 cut(s) 461
AcuI CTGAAG 1 cut(s) 98
AfiI CCNNNNNNNGG 1 cut(s) 293
AgsI TTSAA 7 cut(s) 121, 169, 254, 272, 358, 415, 729
AluBI AGCT 2 cut(s) 70, 848
AluI AGCT 2 cut(s) 70, 848
Alw21I GWGCWC 1 cut(s) 760
Alw26I GTCTC 3 cut(s) 20, 284, 355
AlwI GGATC 3 cut(s) 402, 416, 699
Ama87I CYCGRG 2 cut(s) 221, 287
AoxI GGCC 1 cut(s) 246
ApoI RAATTY 1 cut(s) 461
Asp700I GAANNNNTTC 1 cut(s) 71
AspS9I GGNCC 1 cut(s) 246
AsuHPI GGTGA 4 cut(s) 329, 413, 560, 676
AvaI CYCGRG 2 cut(s) 221, 287
BbsI GAAGAC 6 cut(s) 63, 86, 135, 719, 882, 915
Bbv12I GWGCWC 1 cut(s) 760
BccI CCATC 3 cut(s) 539, 551, 655
BceAI ACGGC 2 cut(s) 76, 233
BciVI GTATCC 1 cut(s) 483
BclI TGATCA 1 cut(s) 466
BcoDI GTCTC 3 cut(s) 20, 284, 355
BfaI CTAG 2 cut(s) 702, 735
BfuI GTATCC 1 cut(s) 483
BisI GCNGC 3 cut(s) 148, 177, 180
BlsI GCNGC 3 cut(s) 149, 178, 181
BmeT110I CYCGRG 2 cut(s) 221, 287
BmgT120I GGNCC 1 cut(s) 246
BmiI GGNNCC 1 cut(s) 187
BpiI GAAGAC 6 cut(s) 63, 86, 135, 719, 882, 915
BpmI CTGGAG 1 cut(s) 315
BsaBI GATNNNNATC 1 cut(s) 471
BsaJI CCNNGG 1 cut(s) 39
BsaWI WCCGGW 1 cut(s) 83
Bsc4I CCNNNNNNNGG 1 cut(s) 293
Bse118I RCCGGY 1 cut(s) 308
Bse1I ACTGG 2 cut(s) 233, 298
Bse3DI GCAATG 1 cut(s) 509
Bse8I GATNNNNATC 1 cut(s) 471
BseDI CCNNGG 1 cut(s) 39
BseGI GGATG 2 cut(s) 100, 625
BseJI GATNNNNATC 1 cut(s) 471
BseLI CCNNNNNNNGG 1 cut(s) 293
BseMI GCAATG 1 cut(s) 509
BseNI ACTGG 2 cut(s) 233, 298
BseRI GAGGAG 2 cut(s) 123, 395
Bsh1236I CGCG 1 cut(s) 366
BshFI GGCC 1 cut(s) 248
BsiHKAI GWGCWC 1 cut(s) 760
BsiHKCI CYCGRG 2 cut(s) 221, 287
BsiSI CCGG 3 cut(s) 84, 183, 309
BslI CCNNNNNNNGG 1 cut(s) 293
BsmAI GTCTC 3 cut(s) 20, 284, 355
BsmBI CGTCTC 1 cut(s) 355
BsnI GGCC 1 cut(s) 248
BsoBI CYCGRG 2 cut(s) 221, 287
Bsp1286I GDGCHC 1 cut(s) 760
Bsp143I GATC 5 cut(s) 313, 394, 421, 466, 704
Bsp19I CCATGG 1 cut(s) 39
BspACI CCGC 5 cut(s) 113, 148, 174, 177, 180
BspANI GGCC 1 cut(s) 248
BspFNI CGCG 1 cut(s) 366
BspLI GGNNCC 1 cut(s) 187
BspPI GGATC 3 cut(s) 402, 416, 699
BspQI GCTCTTC 2 cut(s) 77, 772
BsrBI CCGCTC 1 cut(s) 113
BsrDI GCAATG 1 cut(s) 509
BsrFI RCCGGY 1 cut(s) 308
BsrI ACTGG 2 cut(s) 233, 298
BssAI RCCGGY 1 cut(s) 308
BssECI CCNNGG 1 cut(s) 39
BssMI GATC 5 cut(s) 313, 394, 421, 466, 704
BssT1I CCWWGG 1 cut(s) 39
Bst4CI ACNGT 2 cut(s) 139, 195
Bst6I CTCTTC 4 cut(s) 77, 100, 353, 772
BstC8I GCNNGC 1 cut(s) 387
BstDEI CTNAG 1 cut(s) 849
BstDSI CCRYGG 1 cut(s) 39
BstF5I GGATG 2 cut(s) 100, 625
BstFNI CGCG 1 cut(s) 366
BstKTI GATC 5 cut(s) 316, 397, 424, 469, 707
BstMAI GTCTC 3 cut(s) 20, 284, 355
BstMBI GATC 5 cut(s) 313, 394, 421, 466, 704
BstMWI GCNNNNNNNGC 1 cut(s) 60
BstUI CGCG 1 cut(s) 366
BstV2I GAAGAC 6 cut(s) 63, 86, 135, 719, 882, 915
BstX2I RGATCY 1 cut(s) 704
BstYI RGATCY 1 cut(s) 704
BsuI GTATCC 1 cut(s) 483
BsuRI GGCC 1 cut(s) 248
BtgI CCRYGG 1 cut(s) 39
BtgZI GCGATG 2 cut(s) 381, 558
BtsCI GGATG 2 cut(s) 100, 625
BtsIMutI CAGTG 1 cut(s) 144
Cac8I GCNNGC 1 cut(s) 387
Cfr10I RCCGGY 1 cut(s) 308
Cfr13I GGNCC 1 cut(s) 246
CseI GACGC 1 cut(s) 372
CviAII CATG 3 cut(s) 40, 152, 398
CviJI RGCY 3 cut(s) 70, 248, 848
CviKI_1 RGCY 3 cut(s) 70, 248, 848
DdeI CTNAG 1 cut(s) 849
DpnI GATC 5 cut(s) 315, 396, 423, 468, 706
DpnII GATC 5 cut(s) 313, 394, 421, 466, 704
Eam1104I CTCTTC 4 cut(s) 77, 100, 353, 772
EarI CTCTTC 4 cut(s) 77, 100, 353, 772
Eco130I CCWWGG 1 cut(s) 39
Eco57I CTGAAG 1 cut(s) 98
Eco88I CYCGRG 2 cut(s) 221, 287
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
Esp3I CGTCTC 1 cut(s) 355
FaeI CATG 3 cut(s) 43, 155, 401
FaiI YATR 6 cut(s) 41, 153, 203, 377, 399, 497
FatI CATG 3 cut(s) 39, 151, 397
FauI CCCGC 2 cut(s) 106, 181
FbaI TGATCA 1 cut(s) 466
Fnu4HI GCNGC 3 cut(s) 148, 177, 180
FokI GGATG 2 cut(s) 107, 632
Fsp4HI GCNGC 3 cut(s) 148, 177, 180
FspBI CTAG 2 cut(s) 702, 735
GluI GCNGC 3 cut(s) 148, 177, 180
GsuI CTGGAG 1 cut(s) 315
HaeIII GGCC 1 cut(s) 248
HapII CCGG 3 cut(s) 84, 183, 309
HgaI GACGC 1 cut(s) 372
Hin1II CATG 3 cut(s) 43, 155, 401
HinfI GANTC 7 cut(s) 117, 229, 268, 524, 685, 725, 881
HpaII CCGG 3 cut(s) 84, 183, 309
HphI GGTGA 4 cut(s) 329, 413, 560, 676
Hpy166II GTNNAC 1 cut(s) 351
Hpy188I TCNGA 3 cut(s) 104, 199, 886
Hpy188III TCNNGA 3 cut(s) 76, 223, 238
Hpy8I GTNNAC 1 cut(s) 351
HpyAV CCTTC 6 cut(s) 44, 220, 562, 567, 571, 594
HpyCH4III ACNGT 2 cut(s) 139, 195
HpyF10VI GCNNNNNNNGC 1 cut(s) 60
HpyF3I CTNAG 1 cut(s) 849
Hsp92II CATG 3 cut(s) 43, 155, 401
Ksp22I TGATCA 1 cut(s) 466
Kzo9I GATC 5 cut(s) 313, 394, 421, 466, 704
LguI GCTCTTC 2 cut(s) 77, 772
LmnI GCTCC 2 cut(s) 110, 382
LpnPI CCDG 8 cut(s) 89, 97, 196, 223, 246, 279, 322, 438
MaeI CTAG 2 cut(s) 702, 735
MaeIII GTNAC 3 cut(s) 141, 491, 682
MalI GATC 5 cut(s) 315, 396, 423, 468, 706
MbiI CCGCTC 1 cut(s) 113
MboI GATC 5 cut(s) 313, 394, 421, 466, 704
MflI RGATCY 1 cut(s) 704
MhlI GDGCHC 1 cut(s) 760
MluCI AATT 3 cut(s) 317, 410, 461
MlyI GAGTC 1 cut(s) 679
MnlI CCTC 9 cut(s) 101, 208, 219, 273, 373, 514, 610, 784, 815
MroXI GAANNNNTTC 1 cut(s) 71
MseI TTAA 2 cut(s) 90, 429
MspI CCGG 3 cut(s) 84, 183, 309
MvnI CGCG 1 cut(s) 366
MwoI GCNNNNNNNGC 1 cut(s) 60
NcoI CCATGG 1 cut(s) 39
NdeII GATC 5 cut(s) 313, 394, 421, 466, 704
NlaIII CATG 3 cut(s) 43, 155, 401
NlaIV GGNNCC 1 cut(s) 187
NmuCI GTSAC 3 cut(s) 141, 491, 682
PciSI GCTCTTC 2 cut(s) 77, 772
PcsI WCGNNNNNNNCGW 1 cut(s) 309
PdmI GAANNNNTTC 1 cut(s) 71
PfeI GAWTC 6 cut(s) 117, 229, 268, 524, 725, 881
PkrI GCNGC 3 cut(s) 149, 178, 181
PleI GAGTC 1 cut(s) 679
PpsI GAGTC 1 cut(s) 679
PspN4I GGNNCC 1 cut(s) 187
PspPI GGNCC 1 cut(s) 246
PsuI RGATCY 1 cut(s) 704
SapI GCTCTTC 2 cut(s) 77, 772
SaqAI TTAA 2 cut(s) 90, 429
SatI GCNGC 3 cut(s) 148, 177, 180
Sau3AI GATC 5 cut(s) 313, 394, 421, 466, 704
Sau96I GGNCC 1 cut(s) 246
SchI GAGTC 1 cut(s) 679
SduI GDGCHC 1 cut(s) 760
SetI ASST 5 cut(s) 72, 135, 219, 826, 850
SgrAI CRCCGGYG 1 cut(s) 308
Sse9I AATT 3 cut(s) 317, 410, 461
SsiI CCGC 5 cut(s) 113, 148, 174, 177, 180
SspI AATATT 1 cut(s) 418
SspMI CTAG 2 cut(s) 702, 735
StyI CCWWGG 1 cut(s) 39
TaaI ACNGT 2 cut(s) 139, 195
TaqI TCGA 5 cut(s) 48, 213, 408, 698, 789
TasI AATT 3 cut(s) 317, 410, 461
TauI GCSGC 3 cut(s) 150, 179, 182
TfiI GAWTC 6 cut(s) 117, 229, 268, 524, 725, 881
Tru1I TTAA 2 cut(s) 90, 429
Tru9I TTAA 2 cut(s) 90, 429
TscAI CASTG 1 cut(s) 144
TseFI GTSAC 3 cut(s) 141, 491, 682
Tsp45I GTSAC 3 cut(s) 141, 491, 682
TspDTI ATGAA 9 cut(s) 17, 384, 567, 660, 817, 825, 855, 912, 921
TspRI CASTG 1 cut(s) 144
XapI RAATTY 1 cut(s) 461
XmnI GAANNNNTTC 1 cut(s) 71
XspI CTAG 2 cut(s) 702, 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.