MD09G1191700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0014088
Physical Location & Seq
Forward (+)
17024962 .. 17026761
1800 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1191700.v1.1.491

Sequence Viewer

Length: 915 bp
ATGGCCATGGAAATCGTAGTCGGAGACCGTACATCAGTTATAGTAGAGAAGGGTCAGAAGGCTGTGTTTGGACGAGGAAATGCGTACACCACCGACGACCGAACGGTGTCTCGCCGTCACGTCTCTTTCGTTTCTGAGAATAACCAAACAAAGGCCTGCGTTTCGTTTGAGGTTCTGGGAAAGAATCCCATGTGGACCCGGAGCGAAAAAGATGGAGAAGTTAGGGTTTTCAGGAGGTCGGAGAAGGGTGAGGTGGCGGCCGGTGATTGGTTCTGTGTGTCTGGGAAGAAACCCGTTTGGTTTAGAGTGGGAAAGGTTGGGGTAGATGAGAGAGAGAATAGGGTTTTGGAGAGTGAGCTTGAGTTGGCTGAGGGTTCGGGAAGTGGGTCTGAATTGGAGAGTCTCGATTTTTCCGGCATTGACCCTGTTAAAGAGCTTGGTTTTGTTGTAATGGGGCACGAGTTTGATCACTGTCCAAAGCAAATGATCCGTGATGTAAAGAAGTGGAACTGGTTCCTCGAGGAACCTGGAAAAGAAGGTGACGATGATGATGGATTTGAGAGGAAGGAGAGGAGGGGTGTGCGGAGAAAGAGGGGAAAAGGTGAAGAAAATGAGGACGACGAGTGGACAGGGGAGAGTGAAGCTGATGAAGAGGCTGTTGCAAAACTAAGAAAGGTAAATACACCAAAATATTCTACAAGATCAAAGGCGCGTAACAAACCTCAGAAGGATACAAAGAGGGGTAAATGTTCTGCGCACAAGAAGACTCCTGGCGTGGATGAAGAGGGAATGGAAGATGAAGATGACGAAACGCTCGGAGGCTTCATTGTTGCTGAGGAGGACATGGAAGAAGACGAGCTAGAGGAAACGGAAGACGAGGAGGAATTTGTCGAAGATGATGATGAAGAAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

305

Amino Acids

34.58

Weight (kDa)

4.67

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13780
fragaria_vesca FvH4_6g33680
malus_domestica MD09G1191700.v1.1
prunus_persica Prupe.3G047900_v2.0.a1
pyrus_communis pycom09g10820
rosa_chinensis RchiOBHm_Chr2g0143591
rosa_laevigata RLG00000020049
rosa_multiflora Rmu_sc0002412.1_g000003 Rmu_sc0002412.1_g000004 Rmu_sc0005308.1_g000005
rosa_roxburghii Rroxscaffold_2G00101630
rosa_rugosa Rorug02G0384000
rosa_samantha Rh2AG436000 Rh2BG443600 Rh2CG422100 Rh2DG454000
rosa_wichuraiana Rw2G035530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 518
Acc16I TGCGCA 1 cut(s) 756
AccII CGCG 1 cut(s) 712
AciI CCGC 2 cut(s) 257, 583
AclWI GGATC 1 cut(s) 481
AcoI YGGCCR 2 cut(s) 3, 258
AcsI RAATTY 1 cut(s) 884
AfaI GTAC 2 cut(s) 31, 86
AfiI CCNNNNNNNGG 2 cut(s) 151, 267
AjiI CACGTC 1 cut(s) 121
AjnI CCWGG 2 cut(s) 526, 769
AjuI GAANNNNNNNTTGG 2 cut(s) 329, 361
AluBI AGCT 4 cut(s) 358, 436, 644, 859
AluI AGCT 4 cut(s) 358, 436, 644, 859
Alw26I GTCTC 4 cut(s) 18, 114, 127, 407
AlwI GGATC 1 cut(s) 481
Ama87I CYCGRG 1 cut(s) 518
AoxI GGCC 3 cut(s) 3, 153, 258
ApoI RAATTY 1 cut(s) 884
Asp700I GAANNNNTTC 1 cut(s) 512
AspLEI GCGC 2 cut(s) 712, 757
AspS9I GGNCC 1 cut(s) 195
AsuC2I CCSGG 1 cut(s) 199
AsuHPI GGTGA 4 cut(s) 260, 275, 551, 614
AvaI CYCGRG 1 cut(s) 518
AvaII GGWCC 1 cut(s) 195
BaeGI GKGCMC 1 cut(s) 459
BalI TGGCCA 1 cut(s) 5
BauI CACGAG 1 cut(s) 458
BbsI GAAGAC 3 cut(s) 770, 858, 879
BbvCI CCTCAGC 2 cut(s) 369, 834
BccI CCATC 2 cut(s) 206, 545
BceAI ACGGC 1 cut(s) 99
BciT130I CCWGG 2 cut(s) 528, 771
BciVI GTATCC 1 cut(s) 724
BclI TGATCA 1 cut(s) 466
BcnI CCSGG 1 cut(s) 199
BcoDI GTCTC 4 cut(s) 18, 114, 127, 407
BfaI CTAG 1 cut(s) 860
BfuI GTATCC 1 cut(s) 724
BisI GCNGC 1 cut(s) 258
BlsI GCNGC 1 cut(s) 259
Bme1390I CCNGG 3 cut(s) 199, 528, 771
Bme18I GGWCC 1 cut(s) 195
BmeT110I CYCGRG 1 cut(s) 518
BmgBI CACGTC 1 cut(s) 121
BmgT120I GGNCC 1 cut(s) 195
BmiI GGNNCC 3 cut(s) 197, 515, 525
BmrFI CCNGG 3 cut(s) 199, 528, 771
BpiI GAAGAC 3 cut(s) 770, 858, 879
Bpu10I CCTNAGC 2 cut(s) 369, 834
BpuEI CTTGAG 1 cut(s) 380
BpuMI CCSGG 1 cut(s) 199
BsaI GGTCTC 1 cut(s) 18
BsaJI CCNNGG 1 cut(s) 6
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 267
Bse118I RCCGGY 1 cut(s) 260
Bse1I ACTGG 1 cut(s) 515
BseBI CCWGG 2 cut(s) 528, 771
BseDI CCNNGG 1 cut(s) 6
BseGI GGATG 1 cut(s) 784
BseLI CCNNNNNNNGG 2 cut(s) 151, 267
BseMII CTCAG 4 cut(s) 126, 360, 737, 825
BseNI ACTGG 1 cut(s) 515
BseRI GAGGAG 3 cut(s) 586, 851, 893
BseSI GKGCMC 1 cut(s) 459
BseX3I CGGCCG 1 cut(s) 258
Bsh1236I CGCG 1 cut(s) 712
Bsh1285I CGRYCG 2 cut(s) 100, 261
BshFI GGCC 3 cut(s) 5, 155, 260
BsiEI CGRYCG 2 cut(s) 100, 261
BsiHKCI CYCGRG 1 cut(s) 518
BsiSI CCGG 3 cut(s) 199, 261, 414
BslI CCNNNNNNNGG 2 cut(s) 151, 267
BsmAI GTCTC 4 cut(s) 18, 114, 127, 407
BsmBI CGTCTC 1 cut(s) 127
BsnI GGCC 3 cut(s) 5, 155, 260
Bso31I GGTCTC 1 cut(s) 18
BsoBI CYCGRG 1 cut(s) 518
Bsp1286I GDGCHC 1 cut(s) 459
Bsp143I GATC 3 cut(s) 466, 486, 701
Bsp19I CCATGG 1 cut(s) 6
BspACI CCGC 2 cut(s) 257, 583
BspANI GGCC 3 cut(s) 5, 155, 260
BspCNI CTCAG 4 cut(s) 127, 361, 736, 826
BspFNI CGCG 1 cut(s) 712
BspLI GGNNCC 3 cut(s) 197, 515, 525
BspPI GGATC 1 cut(s) 481
BspTNI GGTCTC 1 cut(s) 18
BsrFI RCCGGY 1 cut(s) 260
BsrI ACTGG 1 cut(s) 515
BssAI RCCGGY 1 cut(s) 260
BssECI CCNNGG 1 cut(s) 6
BssMI GATC 3 cut(s) 466, 486, 701
BssSI CACGAG 1 cut(s) 458
BssT1I CCWWGG 1 cut(s) 6
Bst2BI CACGAG 1 cut(s) 458
Bst2UI CCWGG 2 cut(s) 528, 771
Bst4CI ACNGT 3 cut(s) 29, 106, 473
Bst6I CTCTTC 3 cut(s) 645, 777, 903
BstC8I GCNNGC 1 cut(s) 157
BstDEI CTNAG 5 cut(s) 135, 369, 668, 723, 834
BstDSI CCRYGG 1 cut(s) 6
BstF5I GGATG 1 cut(s) 784
BstFNI CGCG 1 cut(s) 712
BstHHI GCGC 2 cut(s) 712, 757
BstKTI GATC 3 cut(s) 469, 489, 704
BstMAI GTCTC 4 cut(s) 18, 114, 127, 407
BstMBI GATC 3 cut(s) 466, 486, 701
BstMCI CGRYCG 2 cut(s) 100, 261
BstNI CCWGG 2 cut(s) 528, 771
BstSCI CCNGG 3 cut(s) 197, 526, 769
BstSLI GKGCMC 1 cut(s) 459
BstUI CGCG 1 cut(s) 712
BstV2I GAAGAC 3 cut(s) 770, 858, 879
BstZI CGGCCG 1 cut(s) 258
BsuI GTATCC 1 cut(s) 724
BsuRI GGCC 3 cut(s) 5, 155, 260
BtgI CCRYGG 1 cut(s) 6
BtrI CACGTC 1 cut(s) 121
BtsCI GGATG 1 cut(s) 784
BtsIMutI CAGTG 1 cut(s) 469
Cac8I GCNNGC 1 cut(s) 157
CfoI GCGC 2 cut(s) 712, 757
Cfr10I RCCGGY 1 cut(s) 260
Cfr13I GGNCC 1 cut(s) 195
Csp6I GTAC 2 cut(s) 30, 85
CviAII CATG 3 cut(s) 7, 190, 844
CviQI GTAC 2 cut(s) 30, 85
DdeI CTNAG 5 cut(s) 135, 369, 668, 723, 834
DpnI GATC 3 cut(s) 468, 488, 703
DpnII GATC 3 cut(s) 466, 486, 701
EaeI YGGCCR 2 cut(s) 3, 258
EagI CGGCCG 1 cut(s) 258
Eam1104I CTCTTC 3 cut(s) 645, 777, 903
EarI CTCTTC 3 cut(s) 645, 777, 903
EclXI CGGCCG 1 cut(s) 258
Eco130I CCWWGG 1 cut(s) 6
Eco147I AGGCCT 1 cut(s) 155
Eco31I GGTCTC 1 cut(s) 18
Eco47I GGWCC 1 cut(s) 195
Eco52I CGGCCG 1 cut(s) 258
Eco88I CYCGRG 1 cut(s) 518
EcoRII CCWGG 2 cut(s) 526, 769
EcoT14I CCWWGG 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 127
FaeI CATG 3 cut(s) 10, 193, 847
FaiI YATR 4 cut(s) 8, 41, 191, 845
FatI CATG 3 cut(s) 6, 189, 843
FbaI TGATCA 1 cut(s) 466
Fnu4HI GCNGC 1 cut(s) 258
FokI GGATG 1 cut(s) 791
Fsp4HI GCNGC 1 cut(s) 258
FspBI CTAG 1 cut(s) 860
FspI TGCGCA 1 cut(s) 756
GlaI GCGC 2 cut(s) 711, 756
GluI GCNGC 1 cut(s) 258
HaeIII GGCC 3 cut(s) 5, 155, 260
HapII CCGG 3 cut(s) 199, 261, 414
HhaI GCGC 2 cut(s) 712, 757
Hin1II CATG 3 cut(s) 10, 193, 847
Hin6I GCGC 2 cut(s) 710, 755
HinP1I GCGC 2 cut(s) 710, 755
HinfI GANTC 3 cut(s) 184, 400, 766
HpaII CCGG 3 cut(s) 199, 261, 414
HphI GGTGA 4 cut(s) 260, 275, 551, 614
Hpy166II GTNNAC 3 cut(s) 87, 195, 627
Hpy188I TCNGA 7 cut(s) 23, 57, 136, 241, 391, 726, 818
Hpy188III TCNNGA 3 cut(s) 232, 378, 404
Hpy8I GTNNAC 3 cut(s) 87, 195, 627
Hpy99I CGWCG 2 cut(s) 98, 623
HpyAV CCTTC 6 cut(s) 43, 52, 238, 530, 559, 721
HpyCH4III ACNGT 3 cut(s) 29, 106, 473
HpyCH4IV ACGT 1 cut(s) 120
HpyCH4V TGCA 1 cut(s) 662
HpyF3I CTNAG 5 cut(s) 135, 369, 668, 723, 834
HpySE526I ACGT 1 cut(s) 120
Hsp92II CATG 3 cut(s) 10, 193, 847
HspAI GCGC 2 cut(s) 710, 755
Ksp22I TGATCA 1 cut(s) 466
Kzo9I GATC 3 cut(s) 466, 486, 701
LmnI GCTCC 1 cut(s) 201
MaeI CTAG 1 cut(s) 860
MaeII ACGT 1 cut(s) 120
MaeIII GTNAC 3 cut(s) 116, 539, 713
MalI GATC 3 cut(s) 468, 488, 703
MboI GATC 3 cut(s) 466, 486, 701
MhlI GDGCHC 1 cut(s) 459
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 392, 884
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 409, 760
MmeI TCCRAC 1 cut(s) 219
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 512
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 429
Msp20I TGGCCA 1 cut(s) 5
MspI CCGG 3 cut(s) 199, 261, 414
MspR9I CCNGG 3 cut(s) 199, 528, 771
MvaI CCWGG 2 cut(s) 528, 771
MvnI CGCG 1 cut(s) 712
NciI CCSGG 1 cut(s) 199
NcoI CCATGG 1 cut(s) 6
NdeII GATC 3 cut(s) 466, 486, 701
NlaIII CATG 3 cut(s) 10, 193, 847
NlaIV GGNNCC 3 cut(s) 197, 515, 525
NmuCI GTSAC 2 cut(s) 116, 539
NsbI TGCGCA 1 cut(s) 756
PaeR7I CTCGAG 1 cut(s) 518
PceI AGGCCT 1 cut(s) 155
PcsI WCGNNNNNNNCGW 1 cut(s) 126
PdmI GAANNNNTTC 1 cut(s) 512
PfeI GAWTC 1 cut(s) 184
PkrI GCNGC 1 cut(s) 259
PleI GAGTC 2 cut(s) 408, 760
PpsI GAGTC 2 cut(s) 408, 760
Psp6I CCWGG 2 cut(s) 526, 769
PspGI CCWGG 2 cut(s) 526, 769
PspN4I GGNNCC 3 cut(s) 197, 515, 525
PspPI GGNCC 1 cut(s) 195
PspXI VCTCGAGB 1 cut(s) 518
RsaI GTAC 2 cut(s) 31, 86
RsaNI GTAC 2 cut(s) 30, 85
SaqAI TTAA 1 cut(s) 429
SatI GCNGC 1 cut(s) 258
Sau3AI GATC 3 cut(s) 466, 486, 701
Sau96I GGNCC 1 cut(s) 195
SchI GAGTC 2 cut(s) 409, 760
ScrFI CCNGG 3 cut(s) 199, 528, 771
SduI GDGCHC 1 cut(s) 459
Sfr274I CTCGAG 1 cut(s) 518
SinI GGWCC 1 cut(s) 195
SlaI CTCGAG 1 cut(s) 518
SmlI CTYRAG 2 cut(s) 359, 518
SmoI CTYRAG 2 cut(s) 359, 518
Sse9I AATT 2 cut(s) 392, 884
SseBI AGGCCT 1 cut(s) 155
SsiI CCGC 2 cut(s) 257, 583
SspI AATATT 1 cut(s) 692
SspMI CTAG 1 cut(s) 860
StuI AGGCCT 1 cut(s) 155
StyD4I CCNGG 3 cut(s) 197, 526, 769
StyI CCWWGG 1 cut(s) 6
TaaI ACNGT 3 cut(s) 29, 106, 473
TaiI ACGT 1 cut(s) 123
TaqI TCGA 3 cut(s) 405, 519, 891
TaqII GACCGA 1 cut(s) 114
TasI AATT 2 cut(s) 392, 884
TauI GCSGC 1 cut(s) 260
TfiI GAWTC 1 cut(s) 184
Tru1I TTAA 1 cut(s) 429
Tru9I TTAA 1 cut(s) 429
TscAI CASTG 1 cut(s) 476
TseFI GTSAC 2 cut(s) 116, 539
Tsp45I GTSAC 2 cut(s) 116, 539
TspDTI ATGAA 4 cut(s) 663, 795, 813, 814
TspGWI ACGGA 2 cut(s) 479, 884
TspRI CASTG 1 cut(s) 476
VpaK11BI GGWCC 1 cut(s) 195
XapI RAATTY 1 cut(s) 884
XhoI CTCGAG 1 cut(s) 518
XmnI GAANNNNTTC 1 cut(s) 512
XspI CTAG 1 cut(s) 860
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.