RLG00000020049

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0014088
Physical Location & Seq
Reverse (-)
60575248 .. 60576884
1637 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020049

Sequence Viewer

Length: 948 bp
ATGGAAATCGAAGTTGAAGACCGCTCAAAACTTGTAGTAGAGAAAGGTCAAAAGGCCGTGTTTGGAAGAGGAAATGGGTTCAACACCACAGACCGAACAGTTTCTCGCCGTCATGTTTTGTTCGAACTCCAGCACATAAACGCGACCCAAACAGAGCCCAGAATCTCATTCGAGGTTCTGGGGAGGAACCCCATCTGGGTCCGAAGCCAGAAAGACGGGGAAGTCAGGGTTTTCAGAAGGTCGGCGAACGGTGAGCTGGCGGCCGGTGATTGGCTCTGCGTGTCTGGGAAGAGACCCATTTGGTTTAAAGTGAGAAATGTTGGGGTTGAAGAGGAAGACAAGAGTGAGAGTGAAATGGCTGAGGGTTTGCTAAATGGGTCTGAATGGGAAGGTGTTGATGTTTCAGGCATTGACCCTGTTAAAGAGTTTGGTTTCGTTGTAATGGGGAATGAGTTTGATCAGTATCCCAAGTATATGATTCGCGATGTAAAGAACTGGAACTGGTTTCTTGAGGAACCTAGAAAAGAAAGCGACGATGATGAATATGAGGGAAAGGAAAGGAGGGGTGGGAGGAGAAAGAGGAGAAAAGGTGAAGAAAACGATAATGAAGAGTGGACAGGGGATAGTGAAGCTGATGAAGAGCTTGTTGCAAAACTTAGAAAGGTAAATAAGCCAAAATATTCTACAAGATCGAAGGCCCATAATGAAGCTCAGAAGAAAGCAAAAGGTAGTAAACATTCTGATCAAAAGAAGACGGCTGCTGTGGATGAAGAGGGCATAAAAGACGACGACAAAGATGAAGACGAAGATGATGAAACACTTGGAGGCTTCATTGTCGGCGAGGATGACTTGGAAGAAGAAGAAGACCCTGAAGGAACTGATGAATATGAAGAAGAGGAGGAATTTGTTGAAGAAGAAGATGATGATGATGATGATGATGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

316

Amino Acids

36.36

Weight (kDa)

4.49

Isoelectric Point (pI)

52.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13780
fragaria_vesca FvH4_6g33680
malus_domestica MD09G1191700.v1.1
prunus_persica Prupe.3G047900_v2.0.a1
pyrus_communis pycom09g10820
rosa_chinensis RchiOBHm_Chr2g0143591
rosa_laevigata RLG00000020049
rosa_multiflora Rmu_sc0002412.1_g000003 Rmu_sc0002412.1_g000004 Rmu_sc0005308.1_g000005
rosa_roxburghii Rroxscaffold_2G00101630
rosa_rugosa Rorug02G0384000
rosa_samantha Rh2AG436000 Rh2BG443600 Rh2CG422100 Rh2DG454000
rosa_wichuraiana Rw2G035530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 221
AccBSI CCGCTC 1 cut(s) 24
AccII CGCG 2 cut(s) 143, 483
AciI CCGC 2 cut(s) 22, 260
AcoI YGGCCR 1 cut(s) 261
AcsI RAATTY 1 cut(s) 902
AcuI CTGAAG 1 cut(s) 891
AfiI CCNNNNNNNGG 2 cut(s) 196, 270
AgsI TTSAA 4 cut(s) 17, 82, 329, 911
AluBI AGCT 4 cut(s) 256, 632, 643, 710
AluI AGCT 4 cut(s) 256, 632, 643, 710
Alw26I GTCTC 1 cut(s) 286
AoxI GGCC 3 cut(s) 54, 261, 696
ApeKI GCWGC 1 cut(s) 758
ApoI RAATTY 1 cut(s) 902
Asp700I GAANNNNTTC 1 cut(s) 100
AspS9I GGNCC 2 cut(s) 199, 697
AsuHPI GGTGA 3 cut(s) 263, 278, 602
AsuII TTCGAA 1 cut(s) 123
AvaII GGWCC 1 cut(s) 199
BanII GRGCYC 1 cut(s) 159
BbsI GAAGAC 5 cut(s) 24, 342, 758, 807, 870
BbvCI CCTCAGC 1 cut(s) 360
BbvI GCAGC 1 cut(s) 745
BccI CCATC 1 cut(s) 200
BceAI ACGGC 3 cut(s) 41, 93, 771
BciVI GTATCC 1 cut(s) 474
BclI TGATCA 2 cut(s) 457, 742
BcoDI GTCTC 1 cut(s) 286
BfaI CTAG 1 cut(s) 519
BfuI GTATCC 1 cut(s) 474
BisI GCNGC 2 cut(s) 261, 759
BlsI GCNGC 2 cut(s) 262, 760
Bme18I GGWCC 1 cut(s) 199
BmgT120I GGNCC 2 cut(s) 199, 697
BmiI GGNNCC 3 cut(s) 188, 200, 516
BpiI GAAGAC 5 cut(s) 24, 342, 758, 807, 870
BpmI CTGGAG 1 cut(s) 113
Bpu10I CCTNAGC 1 cut(s) 360
Bpu14I TTCGAA 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 530
BsaBI GATNNNNATC 1 cut(s) 462
BsaI GGTCTC 1 cut(s) 286
BsaXI ACNNNNNCTCC 2 cut(s) 574, 604
Bsc4I CCNNNNNNNGG 2 cut(s) 196, 270
Bse118I RCCGGY 1 cut(s) 263
Bse1I ACTGG 2 cut(s) 500, 506
Bse8I GATNNNNATC 1 cut(s) 462
BseGI GGATG 2 cut(s) 772, 850
BseJI GATNNNNATC 1 cut(s) 462
BseLI CCNNNNNNNGG 2 cut(s) 196, 270
BseMII CTCAG 2 cut(s) 351, 725
BseNI ACTGG 2 cut(s) 500, 506
BseRI GAGGAG 3 cut(s) 586, 595, 911
BseX3I CGGCCG 1 cut(s) 261
BseXI GCAGC 1 cut(s) 745
Bsh1236I CGCG 2 cut(s) 143, 483
Bsh1285I CGRYCG 1 cut(s) 264
BshFI GGCC 3 cut(s) 56, 263, 698
BsiEI CGRYCG 1 cut(s) 264
BsiSI CCGG 1 cut(s) 264
BslI CCNNNNNNNGG 2 cut(s) 196, 270
BsmAI GTCTC 1 cut(s) 286
BsnI GGCC 3 cut(s) 56, 263, 698
Bso31I GGTCTC 1 cut(s) 286
Bsp119I TTCGAA 1 cut(s) 123
Bsp1286I GDGCHC 1 cut(s) 159
Bsp143I GATC 3 cut(s) 457, 689, 742
Bsp68I TCGCGA 1 cut(s) 483
BspACI CCGC 2 cut(s) 22, 260
BspANI GGCC 3 cut(s) 56, 263, 698
BspCNI CTCAG 2 cut(s) 352, 724
BspFNI CGCG 2 cut(s) 143, 483
BspLI GGNNCC 3 cut(s) 188, 200, 516
BspQI GCTCTTC 1 cut(s) 633
BspT104I TTCGAA 1 cut(s) 123
BspTNI GGTCTC 1 cut(s) 286
BsrBI CCGCTC 1 cut(s) 24
BsrFI RCCGGY 1 cut(s) 263
BsrI ACTGG 2 cut(s) 500, 506
BssAI RCCGGY 1 cut(s) 263
BssMI GATC 3 cut(s) 457, 689, 742
Bst4CI ACNGT 2 cut(s) 100, 251
Bst6I CTCTTC 7 cut(s) 61, 284, 324, 603, 633, 765, 888
BstBI TTCGAA 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 3 cut(s) 360, 656, 711
BstF5I GGATG 2 cut(s) 772, 850
BstFNI CGCG 2 cut(s) 143, 483
BstKTI GATC 3 cut(s) 460, 692, 745
BstMAI GTCTC 1 cut(s) 286
BstMBI GATC 3 cut(s) 457, 689, 742
BstMCI CGRYCG 1 cut(s) 264
BstUI CGCG 2 cut(s) 143, 483
BstV1I GCAGC 1 cut(s) 745
BstV2I GAAGAC 5 cut(s) 24, 342, 758, 807, 870
BstZI CGGCCG 1 cut(s) 261
BsuI GTATCC 1 cut(s) 474
BsuRI GGCC 3 cut(s) 56, 263, 698
BtgZI GCGATG 1 cut(s) 498
BtsCI GGATG 2 cut(s) 772, 850
BtuMI TCGCGA 1 cut(s) 483
Cac8I GCNNGC 1 cut(s) 258
Cfr10I RCCGGY 1 cut(s) 263
Cfr13I GGNCC 2 cut(s) 199, 697
CviAII CATG 1 cut(s) 113
DdeI CTNAG 3 cut(s) 360, 656, 711
DpnI GATC 3 cut(s) 459, 691, 744
DpnII GATC 3 cut(s) 457, 689, 742
DraI TTTAAA 1 cut(s) 307
DrdI GACNNNNNNGTC 1 cut(s) 221
DseDI GACNNNNNNGTC 1 cut(s) 221
EaeI YGGCCR 1 cut(s) 261
EagI CGGCCG 1 cut(s) 261
Eam1104I CTCTTC 7 cut(s) 61, 284, 324, 603, 633, 765, 888
EarI CTCTTC 7 cut(s) 61, 284, 324, 603, 633, 765, 888
EclXI CGGCCG 1 cut(s) 261
Eco24I GRGCYC 1 cut(s) 159
Eco31I GGTCTC 1 cut(s) 286
Eco47I GGWCC 1 cut(s) 199
Eco52I CGGCCG 1 cut(s) 261
Eco57I CTGAAG 1 cut(s) 891
EcoT38I GRGCYC 1 cut(s) 159
FaeI CATG 1 cut(s) 116
FaiI YATR 8 cut(s) 114, 137, 474, 476, 546, 702, 779, 888
FatI CATG 1 cut(s) 112
FbaI TGATCA 2 cut(s) 457, 742
Fnu4HI GCNGC 2 cut(s) 261, 759
FokI GGATG 2 cut(s) 779, 857
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 2 cut(s) 261, 759
FspBI CTAG 1 cut(s) 519
GluI GCNGC 2 cut(s) 261, 759
GsuI CTGGAG 1 cut(s) 113
HaeIII GGCC 3 cut(s) 56, 263, 698
HapII CCGG 1 cut(s) 264
Hin1II CATG 1 cut(s) 116
HinfI GANTC 2 cut(s) 162, 478
HpaII CCGG 1 cut(s) 264
HphI GGTGA 3 cut(s) 263, 278, 602
Hpy166II GTNNAC 2 cut(s) 615, 734
Hpy188I TCNGA 5 cut(s) 203, 236, 382, 714, 742
Hpy188III TCNNGA 2 cut(s) 482, 509
Hpy8I GTNNAC 2 cut(s) 615, 734
Hpy99I CGWCG 2 cut(s) 536, 791
HpyAV CCTTC 4 cut(s) 231, 383, 688, 866
HpyCH4III ACNGT 2 cut(s) 100, 251
HpyCH4V TGCA 1 cut(s) 650
HpyF3I CTNAG 3 cut(s) 360, 656, 711
Hsp92II CATG 1 cut(s) 116
Ksp22I TGATCA 2 cut(s) 457, 742
Kzo9I GATC 3 cut(s) 457, 689, 742
LguI GCTCTTC 1 cut(s) 633
Lsp1109I GCAGC 1 cut(s) 745
MaeI CTAG 1 cut(s) 519
MalI GATC 3 cut(s) 459, 691, 744
MbiI CCGCTC 1 cut(s) 24
MboI GATC 3 cut(s) 457, 689, 742
MhlI GDGCHC 1 cut(s) 159
MluCI AATT 1 cut(s) 902
MroXI GAANNNNTTC 1 cut(s) 100
MseI TTAA 2 cut(s) 306, 420
MspI CCGG 1 cut(s) 264
MvnI CGCG 2 cut(s) 143, 483
NdeII GATC 3 cut(s) 457, 689, 742
NlaIII CATG 1 cut(s) 116
NlaIV GGNNCC 3 cut(s) 188, 200, 516
NruI TCGCGA 1 cut(s) 483
NspV TTCGAA 1 cut(s) 123
PciSI GCTCTTC 1 cut(s) 633
PdmI GAANNNNTTC 1 cut(s) 100
PfeI GAWTC 2 cut(s) 162, 478
PkrI GCNGC 2 cut(s) 262, 760
PspN4I GGNNCC 3 cut(s) 188, 200, 516
PspPI GGNCC 2 cut(s) 199, 697
RruI TCGCGA 1 cut(s) 483
SapI GCTCTTC 1 cut(s) 633
SaqAI TTAA 2 cut(s) 306, 420
SatI GCNGC 2 cut(s) 261, 759
Sau3AI GATC 3 cut(s) 457, 689, 742
Sau96I GGNCC 2 cut(s) 199, 697
SduI GDGCHC 1 cut(s) 159
SfuI TTCGAA 1 cut(s) 123
SinI GGWCC 1 cut(s) 199
SmlI CTYRAG 1 cut(s) 509
SmoI CTYRAG 1 cut(s) 509
Sse9I AATT 1 cut(s) 902
SsiI CCGC 2 cut(s) 22, 260
SspI AATATT 1 cut(s) 680
SspMI CTAG 1 cut(s) 519
TaaI ACNGT 2 cut(s) 100, 251
TaqI TCGA 4 cut(s) 9, 123, 171, 692
TaqII GACCGA 1 cut(s) 108
TasI AATT 1 cut(s) 902
TauI GCSGC 1 cut(s) 263
TfiI GAWTC 2 cut(s) 162, 478
Tru1I TTAA 2 cut(s) 306, 420
Tru9I TTAA 2 cut(s) 306, 420
TseI GCWGC 1 cut(s) 758
VpaK11BI GGWCC 1 cut(s) 199
XapI RAATTY 1 cut(s) 902
XmnI GAANNNNTTC 1 cut(s) 100
XspI CTAG 1 cut(s) 519
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.