FvH4_6g33680

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014088
Physical Location & Seq
Reverse (-)
26705130 .. 26707151
2022 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g33680.t1

Sequence Viewer

Length: 927 bp
ATGGAAATCGAAGTTGAAGACCGCTCAAAACTTGTAGTAGAGAAAGGTCAGAAGGCCGTATTTGGAAGAGGAAATGGGTTCAACACCACCGACCCAACAGTGTCTCGCCGCCAGGTTTTGCTCGAACTCGAGCACAGAAACGCAAACCAAACAGAGCCCAGAATCTCATTCGAGGTTCTTGGGAGGAACCCCATCTGGGTCCGTAGCCACAAAGAGGGGGAAGTCAGGGTTTTCAGAAGGTCGGAGAAGGGTGAGCTGGCCGCCGGTGATTGGCTCTGCGTGTCGGGGAAGAGACCCATTTGGTTTAAAGTGAGAAATATTGAGGAGGAAGAGGAAGATAAGAGGATTTCGGAGAGTGAGAGTGAATTGGCTAAGGGTTTGATAAATGGGTCTGAATGGGAAGGTGCTGATGTTTCTGGCATTGACCCTGTTAAAGAGTTTGGTTTTATTGTAATGGGGCATGAGTTTGATCAGTATCCGAAGCAAATGATCCGCGATATAAAGAACTGGGACTGGTTTCTTGAGGAACCTAGAAAAGAAAGCGACGATGATGAATATGAAGGGAAGGGAAGGAGGGGTGGGAGAAGAAAGAGGAAAAAAGGTGAAGAAGACGACAATGAAGAGTGGACAGGGGATAGTGAAGTTGATGCAGAGTTTGTTGCAAAACTTAGAAAGGTAAATAAGCCAAAATATTCTACCAGATCGAAGGCCCATAATGAACCTCAGAAGAAAGCAAAAGGTAGTAAAAGTTCTGTTCAGAAGATGACTTCTGCTGCGGATGAAGAGGGCATAGACGATGACGATGATGAAACACTTGGAGGCTTCATTGTAGGGGAGGACGGCTTGGAAGACGAAGAAGACCCTGATGGAACTGATGAATTTGAAGAAGAGGAGGAATTTGTTGAAGAAGATGATGATGATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

309

Amino Acids

35.4

Weight (kDa)

4.6

Isoelectric Point (pI)

54.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13780
fragaria_vesca FvH4_6g33680
malus_domestica MD09G1191700.v1.1
prunus_persica Prupe.3G047900_v2.0.a1
pyrus_communis pycom09g10820
rosa_chinensis RchiOBHm_Chr2g0143591
rosa_laevigata RLG00000020049
rosa_multiflora Rmu_sc0002412.1_g000003 Rmu_sc0002412.1_g000004 Rmu_sc0005308.1_g000005
rosa_roxburghii Rroxscaffold_2G00101630
rosa_rugosa Rorug02G0384000
rosa_samantha Rh2AG436000 Rh2BG443600 Rh2CG422100 Rh2DG454000
rosa_wichuraiana Rw2G035530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 24
AccII CGCG 1 cut(s) 495
AciI CCGC 5 cut(s) 22, 109, 261, 493, 776
AclWI GGATC 1 cut(s) 484
AcoI YGGCCR 1 cut(s) 258
AcsI RAATTY 2 cut(s) 878, 896
AfiI CCNNNNNNNGG 3 cut(s) 196, 214, 270
AgsI TTSAA 4 cut(s) 17, 82, 884, 905
AjnI CCWGG 1 cut(s) 111
AluBI AGCT 1 cut(s) 256
AluI AGCT 1 cut(s) 256
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 2 cut(s) 108, 286
AlwI GGATC 1 cut(s) 484
Ama87I CYCGRG 1 cut(s) 128
AoxI GGCC 3 cut(s) 54, 258, 708
ApeKI GCWGC 1 cut(s) 773
ApoI RAATTY 2 cut(s) 878, 896
AspS9I GGNCC 2 cut(s) 199, 709
AsuHPI GGTGA 3 cut(s) 263, 278, 614
AvaI CYCGRG 1 cut(s) 128
AvaII GGWCC 1 cut(s) 199
BanII GRGCYC 1 cut(s) 159
BbsI GAAGAC 4 cut(s) 24, 615, 855, 864
Bbv12I GWGCWC 1 cut(s) 135
BbvI GCAGC 1 cut(s) 760
BccI CCATC 2 cut(s) 200, 860
BceAI ACGGC 2 cut(s) 41, 856
BciT130I CCWGG 1 cut(s) 113
BciVI GTATCC 1 cut(s) 486
BclI TGATCA 1 cut(s) 469
BcoDI GTCTC 2 cut(s) 108, 286
BfaI CTAG 1 cut(s) 531
BfuI GTATCC 1 cut(s) 486
BisI GCNGC 3 cut(s) 109, 261, 774
BlsI GCNGC 3 cut(s) 110, 262, 775
Bme1390I CCNGG 1 cut(s) 113
Bme18I GGWCC 1 cut(s) 199
BmeT110I CYCGRG 1 cut(s) 128
BmgT120I GGNCC 2 cut(s) 199, 709
BmiI GGNNCC 3 cut(s) 188, 200, 528
BmrFI CCNGG 1 cut(s) 113
BmrI ACTGGG 1 cut(s) 517
BmsI GCATC 1 cut(s) 637
BmuI ACTGGG 1 cut(s) 517
BpiI GAAGAC 4 cut(s) 24, 615, 855, 864
Bpu10I CCTNAGC 1 cut(s) 372
BpuEI CTTGAG 1 cut(s) 542
BsaBI GATNNNNATC 1 cut(s) 474
BsaI GGTCTC 1 cut(s) 286
Bsc4I CCNNNNNNNGG 3 cut(s) 196, 214, 270
Bse118I RCCGGY 1 cut(s) 263
Bse1I ACTGG 2 cut(s) 512, 518
Bse8I GATNNNNATC 1 cut(s) 474
BseBI CCWGG 1 cut(s) 113
BseGI GGATG 1 cut(s) 784
BseJI GATNNNNATC 1 cut(s) 474
BseLI CCNNNNNNNGG 3 cut(s) 196, 214, 270
BseMII CTCAG 1 cut(s) 737
BseNI ACTGG 2 cut(s) 512, 518
BseRI GAGGAG 2 cut(s) 338, 905
BseXI GCAGC 1 cut(s) 760
Bsh1236I CGCG 1 cut(s) 495
BshFI GGCC 3 cut(s) 56, 260, 710
BsiHKAI GWGCWC 1 cut(s) 135
BsiHKCI CYCGRG 1 cut(s) 128
BsiSI CCGG 1 cut(s) 264
BslFI GGGAC 1 cut(s) 524
BslI CCNNNNNNNGG 3 cut(s) 196, 214, 270
BsmAI GTCTC 2 cut(s) 108, 286
BsmFI GGGAC 1 cut(s) 524
BsnI GGCC 3 cut(s) 56, 260, 710
Bso31I GGTCTC 1 cut(s) 286
BsoBI CYCGRG 1 cut(s) 128
Bsp1286I GDGCHC 2 cut(s) 135, 159
Bsp143I GATC 3 cut(s) 469, 489, 701
BspACI CCGC 5 cut(s) 22, 109, 261, 493, 776
BspANI GGCC 3 cut(s) 56, 260, 710
BspCNI CTCAG 1 cut(s) 736
BspFNI CGCG 1 cut(s) 495
BspLI GGNNCC 3 cut(s) 188, 200, 528
BspPI GGATC 1 cut(s) 484
BspTNI GGTCTC 1 cut(s) 286
BsrBI CCGCTC 1 cut(s) 24
BsrFI RCCGGY 1 cut(s) 263
BsrI ACTGG 2 cut(s) 512, 518
BssAI RCCGGY 1 cut(s) 263
BssMI GATC 3 cut(s) 469, 489, 701
Bst2UI CCWGG 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 100
Bst6I CTCTTC 6 cut(s) 61, 284, 324, 615, 777, 882
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 3 cut(s) 372, 668, 723
BstF5I GGATG 1 cut(s) 784
BstFNI CGCG 1 cut(s) 495
BstKTI GATC 3 cut(s) 472, 492, 704
BstMAI GTCTC 2 cut(s) 108, 286
BstMBI GATC 3 cut(s) 469, 489, 701
BstNI CCWGG 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 111
BstUI CGCG 1 cut(s) 495
BstV1I GCAGC 1 cut(s) 760
BstV2I GAAGAC 4 cut(s) 24, 615, 855, 864
BsuI GTATCC 1 cut(s) 486
BsuRI GGCC 3 cut(s) 56, 260, 710
BtsCI GGATG 1 cut(s) 784
BtsIMutI CAGTG 1 cut(s) 105
Cac8I GCNNGC 1 cut(s) 258
Cfr10I RCCGGY 1 cut(s) 263
Cfr13I GGNCC 2 cut(s) 199, 709
CviAII CATG 1 cut(s) 461
DdeI CTNAG 3 cut(s) 372, 668, 723
DpnI GATC 3 cut(s) 471, 491, 703
DpnII GATC 3 cut(s) 469, 489, 701
DraI TTTAAA 1 cut(s) 307
EaeI YGGCCR 1 cut(s) 258
Eam1104I CTCTTC 6 cut(s) 61, 284, 324, 615, 777, 882
EarI CTCTTC 6 cut(s) 61, 284, 324, 615, 777, 882
Eco24I GRGCYC 1 cut(s) 159
Eco31I GGTCTC 1 cut(s) 286
Eco47I GGWCC 1 cut(s) 199
Eco88I CYCGRG 1 cut(s) 128
EcoRII CCWGG 1 cut(s) 111
EcoT38I GRGCYC 1 cut(s) 159
FaeI CATG 1 cut(s) 464
FaiI YATR 5 cut(s) 462, 500, 558, 714, 791
FaqI GGGAC 1 cut(s) 524
FatI CATG 1 cut(s) 460
FbaI TGATCA 1 cut(s) 469
Fnu4HI GCNGC 3 cut(s) 109, 261, 774
FokI GGATG 1 cut(s) 791
FriOI GRGCYC 1 cut(s) 159
Fsp4HI GCNGC 3 cut(s) 109, 261, 774
FspBI CTAG 1 cut(s) 531
GluI GCNGC 3 cut(s) 109, 261, 774
HaeIII GGCC 3 cut(s) 56, 260, 710
HapII CCGG 1 cut(s) 264
Hin1II CATG 1 cut(s) 464
HinfI GANTC 1 cut(s) 162
HpaII CCGG 1 cut(s) 264
HphI GGTGA 3 cut(s) 263, 278, 614
Hpy166II GTNNAC 1 cut(s) 627
Hpy188I TCNGA 8 cut(s) 51, 236, 244, 352, 394, 480, 726, 759
Hpy188III TCNNGA 1 cut(s) 521
Hpy8I GTNNAC 1 cut(s) 627
Hpy99I CGWCG 1 cut(s) 548
HpyAV CCTTC 8 cut(s) 46, 231, 241, 395, 554, 559, 564, 700
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4V TGCA 2 cut(s) 650, 662
HpyF3I CTNAG 3 cut(s) 372, 668, 723
Hsp92II CATG 1 cut(s) 464
Ksp22I TGATCA 1 cut(s) 469
Kzo9I GATC 3 cut(s) 469, 489, 701
Lsp1109I GCAGC 1 cut(s) 760
LweI GCATC 1 cut(s) 637
MaeI CTAG 1 cut(s) 531
MalI GATC 3 cut(s) 471, 491, 703
MbiI CCGCTC 1 cut(s) 24
MboI GATC 3 cut(s) 469, 489, 701
MhlI GDGCHC 2 cut(s) 135, 159
MluCI AATT 3 cut(s) 365, 878, 896
MmeI TCCRAC 1 cut(s) 222
MseI TTAA 2 cut(s) 306, 432
MspI CCGG 1 cut(s) 264
MspR9I CCNGG 1 cut(s) 113
MvaI CCWGG 1 cut(s) 113
MvnI CGCG 1 cut(s) 495
NdeII GATC 3 cut(s) 469, 489, 701
NlaIII CATG 1 cut(s) 464
NlaIV GGNNCC 3 cut(s) 188, 200, 528
PaeR7I CTCGAG 1 cut(s) 128
PfeI GAWTC 1 cut(s) 162
PkrI GCNGC 3 cut(s) 110, 262, 775
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
PspN4I GGNNCC 3 cut(s) 188, 200, 528
PspPI GGNCC 2 cut(s) 199, 709
PspXI VCTCGAGB 1 cut(s) 128
PsrI GAACNNNNNNTAC 2 cut(s) 733, 765
SaqAI TTAA 2 cut(s) 306, 432
SatI GCNGC 3 cut(s) 109, 261, 774
Sau3AI GATC 3 cut(s) 469, 489, 701
Sau96I GGNCC 2 cut(s) 199, 709
ScrFI CCNGG 1 cut(s) 113
SduI GDGCHC 2 cut(s) 135, 159
SfaNI GCATC 1 cut(s) 637
Sfr274I CTCGAG 1 cut(s) 128
SgrAI CRCCGGYG 1 cut(s) 263
SinI GGWCC 1 cut(s) 199
SlaI CTCGAG 1 cut(s) 128
SmlI CTYRAG 2 cut(s) 128, 521
SmoI CTYRAG 2 cut(s) 128, 521
Sse9I AATT 3 cut(s) 365, 878, 896
SsiI CCGC 5 cut(s) 22, 109, 261, 493, 776
SspI AATATT 2 cut(s) 319, 692
SspMI CTAG 1 cut(s) 531
StyD4I CCNGG 1 cut(s) 111
TaaI ACNGT 1 cut(s) 100
TaqI TCGA 5 cut(s) 9, 123, 129, 171, 704
TasI AATT 3 cut(s) 365, 878, 896
TauI GCSGC 2 cut(s) 111, 263
TfiI GAWTC 1 cut(s) 162
Tru1I TTAA 2 cut(s) 306, 432
Tru9I TTAA 2 cut(s) 306, 432
TscAI CASTG 1 cut(s) 105
TseI GCWGC 1 cut(s) 773
TspDTI ATGAA 8 cut(s) 567, 573, 633, 732, 795, 814, 822, 891
TspGWI ACGGA 1 cut(s) 191
TspRI CASTG 1 cut(s) 105
VpaK11BI GGWCC 1 cut(s) 199
XapI RAATTY 2 cut(s) 878, 896
XhoI CTCGAG 1 cut(s) 128
XspI CTAG 1 cut(s) 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.