Rmu_sc0005308.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005308.1
OG0014088
Physical Location & Seq
Reverse (-)
20620 .. 21093
474 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005308.1_g000005.1.cds

Sequence Viewer

Length: 474 bp
atggaaatcgaagttgaagaccgctcaaaacttgtagtggagaaaggtcaaaaggccgtgtttggaagaggaaatgggttcaacaccacagaccgaacagtctctcgccgtcatgttttgttcgagctcgagcacaaaaacgcgacccaaacagagcccagaatctcgttcgaggttctggggaggaaccccgtctgggtccggagccagaaagatggggaagtcagggttttcagaaggtcggagaagggtgagctggcggccggtgattggctctgcgtgtctgggaagagacccatttggtttaaagtgagaaatgttggggttgaagaggaagttaagagggttttggagagtgagagtgaaatggctgagggtttgctaaatgggtctgaatggggaggtgttgatgtttcaggcattgaccctgttaaaggtttggctctaaattgcttcatggtcttgcttgtttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

157

Amino Acids

17.67

Weight (kDa)

6.19

Isoelectric Point (pI)

45.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014088)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13780
fragaria_vesca FvH4_6g33680
malus_domestica MD09G1191700.v1.1
prunus_persica Prupe.3G047900_v2.0.a1
pyrus_communis pycom09g10820
rosa_chinensis RchiOBHm_Chr2g0143591
rosa_laevigata RLG00000020049
rosa_multiflora Rmu_sc0002412.1_g000003 Rmu_sc0002412.1_g000004 Rmu_sc0005308.1_g000005
rosa_roxburghii Rroxscaffold_2G00101630
rosa_rugosa Rorug02G0384000
rosa_samantha Rh2AG436000 Rh2BG443600 Rh2CG422100 Rh2DG454000
rosa_wichuraiana Rw2G035530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 98
AccBSI CCGCTC 1 cut(s) 24
AccII CGCG 1 cut(s) 143
AccIII TCCGGA 1 cut(s) 201
AciI CCGC 2 cut(s) 22, 260
AcoI YGGCCR 1 cut(s) 261
AfiI CCNNNNNNNGG 3 cut(s) 196, 270, 434
AgsI TTSAA 3 cut(s) 17, 82, 329
AluBI AGCT 2 cut(s) 127, 256
AluI AGCT 2 cut(s) 127, 256
Alw21I GWGCWC 2 cut(s) 129, 135
Alw26I GTCTC 2 cut(s) 106, 286
Ama87I CYCGRG 1 cut(s) 128
Aor13HI TCCGGA 1 cut(s) 201
AoxI GGCC 2 cut(s) 54, 261
AspS9I GGNCC 1 cut(s) 199
AsuHPI GGTGA 2 cut(s) 263, 278
AvaI CYCGRG 1 cut(s) 128
AvaII GGWCC 1 cut(s) 199
BanII GRGCYC 2 cut(s) 129, 159
BbsI GAAGAC 1 cut(s) 24
Bbv12I GWGCWC 2 cut(s) 129, 135
BbvCI CCTCAGC 1 cut(s) 372
BccI CCATC 1 cut(s) 209
BceAI ACGGC 2 cut(s) 41, 93
BcoDI GTCTC 2 cut(s) 106, 286
BisI GCNGC 1 cut(s) 261
BlsI GCNGC 1 cut(s) 262
Bme18I GGWCC 1 cut(s) 199
BmeT110I CYCGRG 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 199
BmiI GGNNCC 3 cut(s) 188, 200, 206
BpiI GAAGAC 1 cut(s) 24
Bpu10I CCTNAGC 1 cut(s) 372
BsaI GGTCTC 1 cut(s) 286
BsaWI WCCGGW 1 cut(s) 201
Bsc4I CCNNNNNNNGG 3 cut(s) 196, 270, 434
Bse118I RCCGGY 1 cut(s) 263
BseAI TCCGGA 1 cut(s) 201
BseLI CCNNNNNNNGG 3 cut(s) 196, 270, 434
BseMII CTCAG 1 cut(s) 363
BseX3I CGGCCG 1 cut(s) 261
Bsh1236I CGCG 1 cut(s) 143
Bsh1285I CGRYCG 1 cut(s) 264
BshFI GGCC 2 cut(s) 56, 263
BsiEI CGRYCG 1 cut(s) 264
BsiHKAI GWGCWC 2 cut(s) 129, 135
BsiHKCI CYCGRG 1 cut(s) 128
BsiSI CCGG 2 cut(s) 202, 264
BslI CCNNNNNNNGG 3 cut(s) 196, 270, 434
BsmAI GTCTC 2 cut(s) 106, 286
BsnI GGCC 2 cut(s) 56, 263
Bso31I GGTCTC 1 cut(s) 286
BsoBI CYCGRG 1 cut(s) 128
Bsp1286I GDGCHC 3 cut(s) 129, 135, 159
Bsp13I TCCGGA 1 cut(s) 201
BspACI CCGC 2 cut(s) 22, 260
BspANI GGCC 2 cut(s) 56, 263
BspCNI CTCAG 1 cut(s) 364
BspEI TCCGGA 1 cut(s) 201
BspFNI CGCG 1 cut(s) 143
BspLI GGNNCC 3 cut(s) 188, 200, 206
BspTNI GGTCTC 1 cut(s) 286
BsrBI CCGCTC 1 cut(s) 24
BsrFI RCCGGY 1 cut(s) 263
BssAI RCCGGY 1 cut(s) 263
Bst4CI ACNGT 1 cut(s) 100
Bst6I CTCTTC 3 cut(s) 61, 284, 324
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 1 cut(s) 372
BstENI CCTNNNNNAGG 1 cut(s) 432
BstFNI CGCG 1 cut(s) 143
BstMAI GTCTC 2 cut(s) 106, 286
BstMCI CGRYCG 1 cut(s) 264
BstUI CGCG 1 cut(s) 143
BstV2I GAAGAC 1 cut(s) 24
BstXI CCANNNNNNTGG 1 cut(s) 215
BstZI CGGCCG 1 cut(s) 261
BsuRI GGCC 2 cut(s) 56, 263
Cac8I GCNNGC 1 cut(s) 258
Cfr10I RCCGGY 1 cut(s) 263
Cfr13I GGNCC 1 cut(s) 199
CviAII CATG 2 cut(s) 113, 457
CviJI RGCY 9 cut(s) 56, 127, 157, 207, 256, 263, 274, 371, 443
CviKI_1 RGCY 9 cut(s) 56, 127, 157, 207, 256, 263, 274, 371, 443
DdeI CTNAG 1 cut(s) 372
DraI TTTAAA 1 cut(s) 307
DrdI GACNNNNNNGTC 1 cut(s) 98
DseDI GACNNNNNNGTC 1 cut(s) 98
EaeI YGGCCR 1 cut(s) 261
EagI CGGCCG 1 cut(s) 261
Eam1104I CTCTTC 3 cut(s) 61, 284, 324
EarI CTCTTC 3 cut(s) 61, 284, 324
Ecl136II GAGCTC 1 cut(s) 127
EclXI CGGCCG 1 cut(s) 261
Eco24I GRGCYC 2 cut(s) 129, 159
Eco31I GGTCTC 1 cut(s) 286
Eco47I GGWCC 1 cut(s) 199
Eco52I CGGCCG 1 cut(s) 261
Eco53kI GAGCTC 1 cut(s) 127
Eco88I CYCGRG 1 cut(s) 128
EcoICRI GAGCTC 1 cut(s) 127
EcoNI CCTNNNNNAGG 1 cut(s) 432
EcoT38I GRGCYC 2 cut(s) 129, 159
FaeI CATG 2 cut(s) 116, 460
FaiI YATR 2 cut(s) 114, 458
FatI CATG 2 cut(s) 112, 456
Fnu4HI GCNGC 1 cut(s) 261
FriOI GRGCYC 2 cut(s) 129, 159
Fsp4HI GCNGC 1 cut(s) 261
GluI GCNGC 1 cut(s) 261
HaeIII GGCC 2 cut(s) 56, 263
HapII CCGG 2 cut(s) 202, 264
Hin1II CATG 2 cut(s) 116, 460
HinfI GANTC 1 cut(s) 162
HpaII CCGG 2 cut(s) 202, 264
HphI GGTGA 2 cut(s) 263, 278
Hpy188I TCNGA 3 cut(s) 236, 244, 394
Hpy188III TCNNGA 1 cut(s) 202
HpyAV CCTTC 2 cut(s) 231, 241
HpyCH4III ACNGT 1 cut(s) 100
HpyF3I CTNAG 1 cut(s) 372
Hsp92II CATG 2 cut(s) 116, 460
Kpn2I TCCGGA 1 cut(s) 201
LmnI GCTCC 1 cut(s) 204
MbiI CCGCTC 1 cut(s) 24
MboII GAAGA 4 cut(s) 29, 78, 301, 341
MhlI GDGCHC 3 cut(s) 129, 135, 159
MluCI AATT 1 cut(s) 448
MmeI TCCRAC 1 cut(s) 222
MnlI CCTC 7 cut(s) 62, 166, 177, 325, 336, 367, 395
MroI TCCGGA 1 cut(s) 201
MseI TTAA 3 cut(s) 306, 339, 432
MspI CCGG 2 cut(s) 202, 264
MvnI CGCG 1 cut(s) 143
NlaIII CATG 2 cut(s) 116, 460
NlaIV GGNNCC 3 cut(s) 188, 200, 206
PaeR7I CTCGAG 1 cut(s) 128
PfeI GAWTC 1 cut(s) 162
PkrI GCNGC 1 cut(s) 262
Psp124BI GAGCTC 1 cut(s) 129
PspN4I GGNNCC 3 cut(s) 188, 200, 206
PspPI GGNCC 1 cut(s) 199
PspXI VCTCGAGB 1 cut(s) 128
SacI GAGCTC 1 cut(s) 129
SaqAI TTAA 3 cut(s) 306, 339, 432
SatI GCNGC 1 cut(s) 261
Sau96I GGNCC 1 cut(s) 199
SduI GDGCHC 3 cut(s) 129, 135, 159
SetI ASST 7 cut(s) 49, 129, 177, 242, 258, 406, 439
Sfr274I CTCGAG 1 cut(s) 128
SinI GGWCC 1 cut(s) 199
SlaI CTCGAG 1 cut(s) 128
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 1 cut(s) 448
SsiI CCGC 2 cut(s) 22, 260
SstI GAGCTC 1 cut(s) 129
TaaI ACNGT 1 cut(s) 100
TaqI TCGA 4 cut(s) 9, 123, 129, 171
TaqII GACCGA 1 cut(s) 108
TasI AATT 1 cut(s) 448
TauI GCSGC 1 cut(s) 263
TfiI GAWTC 1 cut(s) 162
Tru1I TTAA 3 cut(s) 306, 339, 432
Tru9I TTAA 3 cut(s) 306, 339, 432
TspDTI ATGAA 1 cut(s) 445
VpaK11BI GGWCC 1 cut(s) 199
XagI CCTNNNNNAGG 1 cut(s) 432
XhoI CTCGAG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.